RNA–Protein interactions for RNA: ENST00000613988.4

CBWD1-223, Transcript of COBW domain containing 1, human

TSL 2

Gene CBWD1, Length 1,381 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBWD1-223	ENST00000613988	CHGA	P10645	457 aa	Known RBP	33.04	■■■□□ 2.88
CBWD1-223	ENST00000613988	MYO5B	Q9ULV0	1848 aa		33.03	■■■□□ 2.88
CBWD1-223	ENST00000613988	PPP1R15A	O75807	674 aa	Predicted RBP	33.02	■■■□□ 2.88
CBWD1-223	ENST00000613988	SENP3	Q9H4L4	574 aa	Predicted RBP	33.01	■■■□□ 2.88
CBWD1-223	ENST00000613988	TMEM131L	A2VDJ0	1609 aa		33.01	■■■□□ 2.87
CBWD1-223	ENST00000613988	XIRP1	Q702N8	1843 aa	Known RBP	33	■■■□□ 2.87
CBWD1-223	ENST00000613988	ZFYVE9	O95405	1425 aa		33	■■■□□ 2.87
CBWD1-223	ENST00000613988	RIMS2	Q9UQ26	1411 aa		33	■■■□□ 2.87
CBWD1-223	ENST00000613988	PROSER2	Q86WR7	435 aa	Predicted RBP	32.97	■■■□□ 2.87
CBWD1-223	ENST00000613988	TMEM94	Q12767	1356 aa		32.96	■■■□□ 2.87
CBWD1-223	ENST00000613988	PLEKHG1	Q9ULL1	1385 aa		32.96	■■■□□ 2.87
CBWD1-223	ENST00000613988	RRBP1	Q9P2E9	1410 aa	Known RBP	32.95	■■■□□ 2.87
CBWD1-223	ENST00000613988	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.95	■■■□□ 2.86
CBWD1-223	ENST00000613988	RBM33	Q96EV2	1170 aa	Known RBP	32.91	■■■□□ 2.86
CBWD1-223	ENST00000613988	SOCS7	O14512	581 aa		32.9	■■■□□ 2.86
CBWD1-223	ENST00000613988	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.9	■■■□□ 2.86
CBWD1-223	ENST00000613988	NKTR	P30414	1462 aa	Known RBP	32.87	■■■□□ 2.85
CBWD1-223	ENST00000613988	NWD1	Q149M9	1564 aa		32.87	■■■□□ 2.85
CBWD1-223	ENST00000613988	MED1	Q15648	1581 aa	Predicted RBP	32.86	■■■□□ 2.85
CBWD1-223	ENST00000613988	TBX22	Q9Y458	520 aa		32.86	■■■□□ 2.85
CBWD1-223	ENST00000613988	CHD2	O14647	1828 aa	Known RBP	32.83	■■■□□ 2.85
CBWD1-223	ENST00000613988	NAIP	Q13075	1403 aa		32.81	■■■□□ 2.84
CBWD1-223	ENST00000613988	FAM135B	Q49AJ0	1406 aa		32.81	■■■□□ 2.84
CBWD1-223	ENST00000613988	SPHKAP	Q2M3C7	1700 aa		32.8	■■■□□ 2.84
CBWD1-223	ENST00000613988	MSH6	P52701	1360 aa		32.78	■■■□□ 2.84
CBWD1-223	ENST00000613988	ADAMTS13	Q76LX8	1427 aa		32.77	■■■□□ 2.84
CBWD1-223	ENST00000613988	ZNF326	Q5BKZ1	582 aa	Known RBP	32.74	■■■□□ 2.83
CBWD1-223	ENST00000613988	PHF23	Q9BUL5	403 aa	Predicted RBP	32.74	■■■□□ 2.83
CBWD1-223	ENST00000613988	DIP2A	Q14689	1571 aa		32.73	■■■□□ 2.83
CBWD1-223	ENST00000613988	TRIM52	Q96A61	297 aa		32.71	■■■□□ 2.83
CBWD1-223	ENST00000613988	PIK3R4	Q99570	1358 aa		32.71	■■■□□ 2.83
CBWD1-223	ENST00000613988	SLAIN2	Q9P270	581 aa		32.7	■■■□□ 2.82
CBWD1-223	ENST00000613988	ROBO1	Q9Y6N7	1651 aa		32.69	■■■□□ 2.82
CBWD1-223	ENST00000613988	HFM1	A2PYH4	1435 aa		32.69	■■■□□ 2.82
CBWD1-223	ENST00000613988	C14orf37	Q86TY3	774 aa		32.69	■■■□□ 2.82
CBWD1-223	ENST00000613988	NCOA3	Q9Y6Q9	1424 aa		32.66	■■■□□ 2.82
CBWD1-223	ENST00000613988	TRPM2	O94759	1503 aa		32.66	■■■□□ 2.82
CBWD1-223	ENST00000613988	AMOTL2	Q9Y2J4	779 aa		32.65	■■■□□ 2.82
CBWD1-223	ENST00000613988	CLTCL1	P53675	1640 aa		32.64	■■■□□ 2.82
CBWD1-223	ENST00000613988	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.6	■■■□□ 2.81
CBWD1-223	ENST00000613988	C19orf44	Q9H6X5	657 aa		32.6	■■■□□ 2.81
CBWD1-223	ENST00000613988	PTPRU	Q92729	1446 aa		32.6	■■■□□ 2.81
CBWD1-223	ENST00000613988	SETBP1	Q9Y6X0	1596 aa		32.59	■■■□□ 2.81
CBWD1-223	ENST00000613988	NRXN3	Q9Y4C0	1643 aa		32.58	■■■□□ 2.81
CBWD1-223	ENST00000613988	KIF1B	O60333	1816 aa		32.58	■■■□□ 2.81
CBWD1-223	ENST00000613988	ATF3	P18847	181 aa		32.57	■■■□□ 2.8
CBWD1-223	ENST00000613988	CADPS2	Q86UW7	1296 aa		32.57	■■■□□ 2.8
CBWD1-223	ENST00000613988	NEXMIF	Q5QGS0	1516 aa		32.55	■■■□□ 2.8
CBWD1-223	ENST00000613988	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.53	■■■□□ 2.8
CBWD1-223	ENST00000613988	MET	P08581	1390 aa		32.52	■■■□□ 2.8
CBWD1-223	ENST00000613988	PHLPP1	O60346	1717 aa		32.51	■■■□□ 2.79
CBWD1-223	ENST00000613988	VGF	O15240	615 aa	Predicted RBP	32.47	■■■□□ 2.79
CBWD1-223	ENST00000613988	XRN1	Q8IZH2	1706 aa	Known RBP	32.47	■■■□□ 2.79
CBWD1-223	ENST00000613988	RGS17	Q9UGC6	210 aa	Predicted RBP	32.45	■■■□□ 2.79
CBWD1-223	ENST00000613988	FOXD1	Q16676	465 aa		32.45	■■■□□ 2.78
CBWD1-223	ENST00000613988	RPGRIP1L	Q68CZ1	1315 aa		32.43	■■■□□ 2.78
CBWD1-223	ENST00000613988	JCAD	Q9P266	1359 aa		32.43	■■■□□ 2.78
CBWD1-223	ENST00000613988	DCC	P43146	1447 aa		32.4	■■■□□ 2.78
CBWD1-223	ENST00000613988	COL16A1	Q07092	1604 aa	Predicted RBP	32.38	■■■□□ 2.77
CBWD1-223	ENST00000613988	MPHOSPH9	Q99550	1183 aa		32.37	■■■□□ 2.77
CBWD1-223	ENST00000613988	BRINP3	Q76B58	766 aa		32.36	■■■□□ 2.77
CBWD1-223	ENST00000613988	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.33	■■■□□ 2.77
CBWD1-223	ENST00000613988	CCDC144A	A2RUR9	1427 aa		32.32	■■■□□ 2.77
CBWD1-223	ENST00000613988	PPL	O60437	1756 aa		32.32	■■■□□ 2.76
CBWD1-223	ENST00000613988	MST1R	Q04912	1400 aa		32.31	■■■□□ 2.76
CBWD1-223	ENST00000613988	ADGRL3	Q9HAR2	1447 aa		32.31	■■■□□ 2.76
CBWD1-223	ENST00000613988	SETD1A	O15047	1707 aa	Known RBP	32.29	■■■□□ 2.76
CBWD1-223	ENST00000613988	TRIM26	Q12899	539 aa	Predicted RBP	32.29	■■■□□ 2.76
CBWD1-223	ENST00000613988	POTEA	Q6S8J7	498 aa		32.29	■■■□□ 2.76
CBWD1-223	ENST00000613988	SPATA31A6	Q5VVP1	1343 aa		32.28	■■■□□ 2.76
CBWD1-223	ENST00000613988	RGL3	Q3MIN7	710 aa		32.28	■■■□□ 2.76
CBWD1-223	ENST00000613988	ACIN1	Q9UKV3	1341 aa	Known RBP	32.26	■■■□□ 2.76
CBWD1-223	ENST00000613988	ASXL1	Q8IXJ9	1541 aa		32.26	■■■□□ 2.75
CBWD1-223	ENST00000613988	PTCH1	Q13635	1447 aa		32.25	■■■□□ 2.75
CBWD1-223	ENST00000613988	NALCN	Q8IZF0	1738 aa		32.25	■■■□□ 2.75
CBWD1-223	ENST00000613988	ROBO2	Q9HCK4	1378 aa		32.24	■■■□□ 2.75
CBWD1-223	ENST00000613988	SETD5	Q9C0A6	1442 aa		32.24	■■■□□ 2.75
CBWD1-223	ENST00000613988	ADGRF5	Q8IZF2	1346 aa		32.22	■■■□□ 2.75
CBWD1-223	ENST00000613988	MEX3C	Q5U5Q3	659 aa	Known RBP	32.21	■■■□□ 2.75
CBWD1-223	ENST00000613988	SPATA31E1	Q6ZUB1	1445 aa		32.21	■■■□□ 2.75
CBWD1-223	ENST00000613988	SHPRH	Q149N8	1683 aa		32.21	■■■□□ 2.75
CBWD1-223	ENST00000613988	LRP6	O75581	1613 aa		32.19	■■■□□ 2.74
CBWD1-223	ENST00000613988	ANKRD30B	Q9BXX2	1392 aa		32.18	■■■□□ 2.74
CBWD1-223	ENST00000613988	PRAG1	Q86YV5	1406 aa		32.17	■■■□□ 2.74
CBWD1-223	ENST00000613988	NHSL1	Q5SYE7	1610 aa		32.17	■■■□□ 2.74
CBWD1-223	ENST00000613988	DDX17	Q92841	729 aa	Known RBP	32.16	■■■□□ 2.74
CBWD1-223	ENST00000613988	LRRC59	Q96AG4	307 aa	Known RBP	32.16	■■■□□ 2.74
CBWD1-223	ENST00000613988	C1orf167	Q5SNV9	1468 aa		32.15	■■■□□ 2.74
CBWD1-223	ENST00000613988	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.14	■■■□□ 2.74
CBWD1-223	ENST00000613988	NUTM2E	B1AL46	878 aa	Predicted RBP	32.14	■■■□□ 2.74
CBWD1-223	ENST00000613988	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.14	■■■□□ 2.74
CBWD1-223	ENST00000613988	IFT172	Q9UG01	1749 aa		32.12	■■■□□ 2.73
CBWD1-223	ENST00000613988	STK26	Q9P289	416 aa		32.1	■■■□□ 2.73
CBWD1-223	ENST00000613988	RAB3GAP2	Q9H2M9	1393 aa		32.1	■■■□□ 2.73
CBWD1-223	ENST00000613988	ZNF772	Q68DY9	489 aa	Predicted RBP	32.09	■■■□□ 2.73
CBWD1-223	ENST00000613988	ORAI2	Q96SN7	254 aa		32.08	■■■□□ 2.73
CBWD1-223	ENST00000613988	TMEM132E	Q6IEE7	984 aa		32.07	■■■□□ 2.72
CBWD1-223	ENST00000613988	PCGF6	Q9BYE7	350 aa		32.06	■■■□□ 2.72
CBWD1-223	ENST00000613988	PIK3C2G	O75747	1445 aa		32.04	■■■□□ 2.72
CBWD1-223	ENST00000613988	LRPPRC	P42704	1394 aa	Known RBP	32.04	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms