RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 AEBP2Q6ZN18 517 aaPredicted RBP21.14■□□□□ 0.97
CD48-203ENST00000613788 EID1Q9Y6B2 187 aa21.14■□□□□ 0.97
CD48-203ENST00000613788 ZEB1P37275 1124 aaPredicted RBP21.13■□□□□ 0.97
CD48-203ENST00000613788 KDM2AQ9Y2K7 1162 aa21.13■□□□□ 0.97
CD48-203ENST00000613788 RIMS2Q9UQ26 1411 aa21.13■□□□□ 0.97
CD48-203ENST00000613788 PPP1R15AO75807 674 aaPredicted RBP21.11■□□□□ 0.97
CD48-203ENST00000613788 TXNDC2Q86VQ3 553 aa21.11■□□□□ 0.97
CD48-203ENST00000613788 MYO5BQ9ULV0 1848 aa21.11■□□□□ 0.97
CD48-203ENST00000613788 SLIT1O75093 1534 aa21.1■□□□□ 0.97
CD48-203ENST00000613788 ANKLE2Q86XL3 938 aa21.1■□□□□ 0.97
CD48-203ENST00000613788 LMTK3Q96Q04 1460 aa21.1■□□□□ 0.97
CD48-203ENST00000613788 ARHGAP23Q9P227 1491 aa21.1■□□□□ 0.97
CD48-203ENST00000613788 ZFYVE9O95405 1425 aa21.1■□□□□ 0.97
CD48-203ENST00000613788 NEXMIFQ5QGS0 1516 aa21.09■□□□□ 0.97
CD48-203ENST00000613788 NUTM2DQ5VT03 806 aaPredicted RBP21.09■□□□□ 0.97
CD48-203ENST00000613788 LTKP29376 864 aa21.07■□□□□ 0.96
CD48-203ENST00000613788 HSPA2P54652 639 aa21.06■□□□□ 0.96
CD48-203ENST00000613788 MYOM2P54296 1465 aa21.06■□□□□ 0.96
CD48-203ENST00000613788 PPLO60437 1756 aa21.05■□□□□ 0.96
CD48-203ENST00000613788 ADGRF5Q8IZF2 1346 aa21.05■□□□□ 0.96
CD48-203ENST00000613788 SCAF11Q99590 1463 aaKnown RBP21.04■□□□□ 0.96
CD48-203ENST00000613788 IFT172Q9UG01 1749 aa21.04■□□□□ 0.96
CD48-203ENST00000613788 BCANQ96GW7 911 aa21.02■□□□□ 0.96
CD48-203ENST00000613788 PLEKHG1Q9ULL1 1385 aa21.01■□□□□ 0.95
CD48-203ENST00000613788 NRXN1Q9ULB1 1477 aa21■□□□□ 0.95
CD48-203ENST00000613788 PRAG1Q86YV5 1406 aa21■□□□□ 0.95
CD48-203ENST00000613788 NCKAP5LQ9HCH0 1330 aa21■□□□□ 0.95
CD48-203ENST00000613788 NBPF8Q3BBV2 869 aa20.98■□□□□ 0.95
CD48-203ENST00000613788 PIK3C2GO75747 1445 aa20.98■□□□□ 0.95
CD48-203ENST00000613788 SENP3Q9H4L4 574 aaPredicted RBP20.96■□□□□ 0.95
CD48-203ENST00000613788 C14orf93Q9H972 538 aaKnown RBP20.96■□□□□ 0.95
CD48-203ENST00000613788 MED14O60244 1454 aa20.95■□□□□ 0.94
CD48-203ENST00000613788 NPHP4O75161 1426 aaPredicted RBP20.95■□□□□ 0.94
CD48-203ENST00000613788 CFAP70Q5T0N1 1121 aa20.94■□□□□ 0.94
CD48-203ENST00000613788 SETBP1Q9Y6X0 1596 aa20.93■□□□□ 0.94
CD48-203ENST00000613788 TBX22Q9Y458 520 aa20.93■□□□□ 0.94
CD48-203ENST00000613788 SLC26A8Q96RN1 970 aa20.92■□□□□ 0.94
CD48-203ENST00000613788 DMRT2Q9Y5R5 561 aa20.92■□□□□ 0.94
CD48-203ENST00000613788 POLR1AO95602 1720 aaPredicted RBP20.92■□□□□ 0.94
CD48-203ENST00000613788 ADAMTS13Q76LX8 1427 aa20.89■□□□□ 0.94
CD48-203ENST00000613788 ALKQ9UM73 1620 aa20.89■□□□□ 0.93
CD48-203ENST00000613788 ROCK2O75116 1388 aaKnown RBP20.88■□□□□ 0.93
CD48-203ENST00000613788 NBPF1Q3BBV0 1214 aa20.88■□□□□ 0.93
CD48-203ENST00000613788 LAMC1P11047 1609 aa20.87■□□□□ 0.93
CD48-203ENST00000613788 RALGAPBQ86X10 1494 aa20.87■□□□□ 0.93
CD48-203ENST00000613788 KIAA1210Q9ULL0 1709 aa20.87■□□□□ 0.93
CD48-203ENST00000613788 IQGAP1P46940 1657 aa20.87■□□□□ 0.93
CD48-203ENST00000613788 NRXN3Q9Y4C0 1643 aa20.87■□□□□ 0.93
CD48-203ENST00000613788 STRCQ7RTU9 1775 aa20.86■□□□□ 0.93
CD48-203ENST00000613788 DIP2AQ14689 1571 aa20.86■□□□□ 0.93
CD48-203ENST00000613788 TRPM1Q7Z4N2 1603 aa20.85■□□□□ 0.93
CD48-203ENST00000613788 TMEM132EQ6IEE7 984 aa20.85■□□□□ 0.93
CD48-203ENST00000613788 CARD11Q9BXL7 1154 aa20.85■□□□□ 0.93
CD48-203ENST00000613788 METP08581 1390 aa20.83■□□□□ 0.93
CD48-203ENST00000613788 GPRASP1Q5JY77 1395 aa20.83■□□□□ 0.93
CD48-203ENST00000613788 PIK3R4Q99570 1358 aa20.83■□□□□ 0.93
CD48-203ENST00000613788 ADGRB1O14514 1584 aa20.8■□□□□ 0.92
CD48-203ENST00000613788 STK26Q9P289 416 aa20.79■□□□□ 0.92
CD48-203ENST00000613788 YTHDC2Q9H6S0 1430 aaKnown RBP20.79■□□□□ 0.92
CD48-203ENST00000613788 SETD1AO15047 1707 aaKnown RBP20.79■□□□□ 0.92
CD48-203ENST00000613788 LRPPRCP42704 1394 aaKnown RBP20.78■□□□□ 0.92
CD48-203ENST00000613788 AMOTL2Q9Y2J4 779 aa20.78■□□□□ 0.92
CD48-203ENST00000613788 ABCC11Q96J66 1382 aa20.77■□□□□ 0.92
CD48-203ENST00000613788 KCNA6P17658 529 aa20.77■□□□□ 0.92
CD48-203ENST00000613788 TRAK1Q9UPV9 953 aa20.77■□□□□ 0.92
CD48-203ENST00000613788 ASXL1Q8IXJ9 1541 aa20.77■□□□□ 0.92
CD48-203ENST00000613788 PTPRUQ92729 1446 aa20.74■□□□□ 0.91
CD48-203ENST00000613788 EIF4G2P78344 907 aaKnown RBP eCLIP20.74■□□□□ 0.91
CD48-203ENST00000613788 SIRT1Q96EB6 747 aa20.73■□□□□ 0.91
CD48-203ENST00000613788 EIF3AQ14152 1382 aaKnown RBP20.73■□□□□ 0.91
CD48-203ENST00000613788 USP47Q96K76 1375 aa20.72■□□□□ 0.91
CD48-203ENST00000613788 TECPR2O15040 1411 aa20.71■□□□□ 0.91
CD48-203ENST00000613788 POGKQ9P215 609 aa20.7■□□□□ 0.9
CD48-203ENST00000613788 CHD2O14647 1828 aaKnown RBP20.7■□□□□ 0.9
CD48-203ENST00000613788 DLC1Q96QB1 1528 aa20.69■□□□□ 0.9
CD48-203ENST00000613788 PRAM1Q96QH2 718 aa20.68■□□□□ 0.9
CD48-203ENST00000613788 FAM135BQ49AJ0 1406 aa20.68■□□□□ 0.9
CD48-203ENST00000613788 ZNF335Q9H4Z2 1342 aaPredicted RBP20.68■□□□□ 0.9
CD48-203ENST00000613788 HSPA5P11021 654 aaKnown RBP20.68■□□□□ 0.9
CD48-203ENST00000613788 PTCH1Q13635 1447 aa20.67■□□□□ 0.9
CD48-203ENST00000613788 ROBO2Q9HCK4 1378 aa20.67■□□□□ 0.9
CD48-203ENST00000613788 CENPJQ9HC77 1338 aaPredicted RBP20.67■□□□□ 0.9
CD48-203ENST00000613788 ST20-MTHFSA0A0A6YYL1 179 aa20.67■□□□□ 0.9
CD48-203ENST00000613788 XRN1Q8IZH2 1706 aaKnown RBP20.66■□□□□ 0.9
CD48-203ENST00000613788 NWD1Q149M9 1564 aa20.66■□□□□ 0.9
CD48-203ENST00000613788 WAPLQ7Z5K2 1190 aa20.66■□□□□ 0.9
CD48-203ENST00000613788 PROSER2Q86WR7 435 aaPredicted RBP20.66■□□□□ 0.9
CD48-203ENST00000613788 KNDC1Q76NI1 1749 aa20.66■□□□□ 0.9
CD48-203ENST00000613788 CPS1P31327 1500 aa20.66■□□□□ 0.9
CD48-203ENST00000613788 SLC24A1O60721 1099 aa20.65■□□□□ 0.9
CD48-203ENST00000613788 NKTRP30414 1462 aaKnown RBP20.65■□□□□ 0.9
CD48-203ENST00000613788 SAFB2Q14151 953 aaKnown RBP eCLIP20.63■□□□□ 0.89
CD48-203ENST00000613788 ARHGEF28Q8N1W1 1705 aaKnown RBP20.62■□□□□ 0.89
CD48-203ENST00000613788 PLEKHH1Q9ULM0 1364 aa20.61■□□□□ 0.89
CD48-203ENST00000613788 HIRIP3Q9BW71 556 aaPredicted RBP20.6■□□□□ 0.89
CD48-203ENST00000613788 TESK2Q96S53 571 aa20.58■□□□□ 0.89
CD48-203ENST00000613788 SBNO2Q9Y2G9 1366 aa20.58■□□□□ 0.89
CD48-203ENST00000613788 STRCP1A6NGW2 1772 aa20.58■□□□□ 0.89
CD48-203ENST00000613788 NCOA3Q9Y6Q9 1424 aa20.58■□□□□ 0.88
CD48-203ENST00000613788 C14orf37Q86TY3 774 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms