RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 BIVM-ERCC5R4GMW8 1640 aa17.18■□□□□ 0.34
GGA3-220ENST00000613421 DDX19BQ9UMR2 479 aa17.18■□□□□ 0.34
GGA3-220ENST00000613421 IQGAP2Q13576 1575 aa17.18■□□□□ 0.34
GGA3-220ENST00000613421 GOLGA6L3A6NEY3 463 aa17.18■□□□□ 0.34
GGA3-220ENST00000613421 LTV1Q96GA3 475 aaPredicted RBP17.18■□□□□ 0.34
GGA3-220ENST00000613421 PLEKHH2Q8IVE3 1493 aa17.18■□□□□ 0.34
GGA3-220ENST00000613421 KIAA0586Q9BVV6 1533 aa17.18■□□□□ 0.34
GGA3-220ENST00000613421 RIPK4P57078 832 aa17.17■□□□□ 0.34
GGA3-220ENST00000613421 ANKRD45Q5TZF3 282 aa17.17■□□□□ 0.34
GGA3-220ENST00000613421 CDK11BP21127 795 aaKnown RBP17.17■□□□□ 0.34
GGA3-220ENST00000613421 DZIP1LQ8IYY4 767 aaKnown RBP17.17■□□□□ 0.34
GGA3-220ENST00000613421 CYB5RLQ6IPT4 315 aa17.17■□□□□ 0.34
GGA3-220ENST00000613421 CFAP70Q5T0N1 1121 aa17.16■□□□□ 0.34
GGA3-220ENST00000613421 GPATCH3Q96I76 525 aa17.16■□□□□ 0.34
GGA3-220ENST00000613421 NPHP1O15259 732 aa17.16■□□□□ 0.34
GGA3-220ENST00000613421 PPP2R1AP30153 589 aa17.15■□□□□ 0.34
GGA3-220ENST00000613421 FOXD4L1Q9NU39 408 aa17.15■□□□□ 0.34
GGA3-220ENST00000613421 CDCA7LQ96GN5 454 aa17.15■□□□□ 0.34
GGA3-220ENST00000613421 PTPN23Q9H3S7 1636 aa17.15■□□□□ 0.34
GGA3-220ENST00000613421 LAMC3Q9Y6N6 1575 aa17.15■□□□□ 0.34
GGA3-220ENST00000613421 TMEM132EQ6IEE7 984 aa17.14■□□□□ 0.33
GGA3-220ENST00000613421 NRDCO43847 1150 aa17.14■□□□□ 0.33
GGA3-220ENST00000613421 ST18O60284 1047 aa17.13■□□□□ 0.33
GGA3-220ENST00000613421 PNISRQ8TF01 805 aaKnown RBP17.13■□□□□ 0.33
GGA3-220ENST00000613421 SYAP1Q96A49 352 aaPredicted RBP17.12■□□□□ 0.33
GGA3-220ENST00000613421 CABP2Q9NPB3 220 aa17.11■□□□□ 0.33
GGA3-220ENST00000613421 GGNBP2Q9H3C7 697 aa17.11■□□□□ 0.33
GGA3-220ENST00000613421 CCDC184Q52MB2 194 aa17.11■□□□□ 0.33
GGA3-220ENST00000613421 UNC13AQ9UPW8 1703 aa17.1■□□□□ 0.33
GGA3-220ENST00000613421 CHAF1AQ13111 956 aaPredicted RBP17.1■□□□□ 0.33
GGA3-220ENST00000613421 ZNF330Q9Y3S2 320 aaPredicted RBP17.1■□□□□ 0.33
GGA3-220ENST00000613421 AKNAQ7Z591 1439 aa17.1■□□□□ 0.33
GGA3-220ENST00000613421 DDX11L8A8MPP1 907 aa17.1■□□□□ 0.33
GGA3-220ENST00000613421 AAMPQ13685 434 aa17.1■□□□□ 0.33
GGA3-220ENST00000613421 API5Q9BZZ5 524 aaKnown RBP17.1■□□□□ 0.33
GGA3-220ENST00000613421 KIF16BQ96L93 1317 aa17.1■□□□□ 0.33
GGA3-220ENST00000613421 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.09■□□□□ 0.33
GGA3-220ENST00000613421 MTHFSP49914 203 aa17.09■□□□□ 0.33
GGA3-220ENST00000613421 PANK1Q8TE04 598 aa17.09■□□□□ 0.33
GGA3-220ENST00000613421 NOL8Q76FK4 1167 aaKnown RBP17.08■□□□□ 0.33
GGA3-220ENST00000613421 DRC7Q8IY82 874 aa17.08■□□□□ 0.33
GGA3-220ENST00000613421 ERBINQ96RT1 1412 aa17.08■□□□□ 0.32
GGA3-220ENST00000613421 SCAPERQ9BY12 1400 aa17.08■□□□□ 0.32
GGA3-220ENST00000613421 ANKRD30BQ9BXX2 1392 aa17.08■□□□□ 0.32
GGA3-220ENST00000613421 SMG6Q86US8 1419 aaKnown RBP17.07■□□□□ 0.32
GGA3-220ENST00000613421 CAMSAP2Q08AD1 1489 aa17.07■□□□□ 0.32
GGA3-220ENST00000613421 GSE1Q14687 1217 aa17.07■□□□□ 0.32
GGA3-220ENST00000613421 CHMP3Q9Y3E7 222 aa17.07■□□□□ 0.32
GGA3-220ENST00000613421 TCP11L2Q8N4U5 519 aa17.07■□□□□ 0.32
GGA3-220ENST00000613421 GNAI1P63096 354 aa17.06■□□□□ 0.32
GGA3-220ENST00000613421 ABCC5O15440 1437 aa17.06■□□□□ 0.32
GGA3-220ENST00000613421 HTATSF1O43719 755 aaKnown RBP17.06■□□□□ 0.32
GGA3-220ENST00000613421 FAM69CQ0P6D2 419 aa17.06■□□□□ 0.32
GGA3-220ENST00000613421 GNL2Q13823 731 aaKnown RBP17.05■□□□□ 0.32
GGA3-220ENST00000613421 RILPL2Q969X0 211 aa17.04■□□□□ 0.32
GGA3-220ENST00000613421 HMOX1P09601 288 aa17.04■□□□□ 0.32
GGA3-220ENST00000613421 GORABQ5T7V8 394 aa17.04■□□□□ 0.32
GGA3-220ENST00000613421 ARHGEF11O15085 1522 aa17.04■□□□□ 0.32
GGA3-220ENST00000613421 MAGI1Q96QZ7 1491 aaPredicted RBP17.03■□□□□ 0.32
GGA3-220ENST00000613421 KIAA2012Q0VF49 1180 aa17.03■□□□□ 0.32
GGA3-220ENST00000613421 CCDC141Q6ZP82 1450 aa17.03■□□□□ 0.32
GGA3-220ENST00000613421 TEFQ10587 303 aa17.02■□□□□ 0.31
GGA3-220ENST00000613421 C1orf141Q5JVX7 400 aa17.02■□□□□ 0.31
GGA3-220ENST00000613421 CSPP1Q1MSJ5 1256 aa17.01■□□□□ 0.31
GGA3-220ENST00000613421 PLB1Q6P1J6 1458 aa17.01■□□□□ 0.31
GGA3-220ENST00000613421 HSP90B1P14625 803 aaKnown RBP17.01■□□□□ 0.31
GGA3-220ENST00000613421 TAF7LQ5H9L4 462 aa17■□□□□ 0.31
GGA3-220ENST00000613421 URB2Q14146 1524 aaKnown RBP17■□□□□ 0.31
GGA3-220ENST00000613421 SLC12A5Q9H2X9 1139 aa17■□□□□ 0.31
GGA3-220ENST00000613421 C11orf95C9JLR9 678 aaPredicted RBP16.99■□□□□ 0.31
GGA3-220ENST00000613421 REC8O95072 547 aa16.99■□□□□ 0.31
GGA3-220ENST00000613421 LNPKQ9C0E8 428 aa16.99■□□□□ 0.31
GGA3-220ENST00000613421 FOXD4L5Q5VV16 416 aaPredicted RBP16.99■□□□□ 0.31
GGA3-220ENST00000613421 FOXD4L4Q8WXT5 416 aaPredicted RBP16.99■□□□□ 0.31
GGA3-220ENST00000613421 GRIN2AQ12879 1464 aa16.98■□□□□ 0.31
GGA3-220ENST00000613421 SKOR2Q2VWA4 1001 aaPredicted RBP16.98■□□□□ 0.31
GGA3-220ENST00000613421 DDX49Q9Y6V7 483 aaKnown RBP16.98■□□□□ 0.31
GGA3-220ENST00000613421 PDE3AQ14432 1141 aa16.98■□□□□ 0.31
GGA3-220ENST00000613421 CHMP5Q9NZZ3 219 aa16.97■□□□□ 0.31
GGA3-220ENST00000613421 KIF14Q15058 1648 aa16.97■□□□□ 0.31
GGA3-220ENST00000613421 EIF2S2P20042 333 aaKnown RBP16.97■□□□□ 0.31
GGA3-220ENST00000613421 PHF14O94880 888 aa16.96■□□□□ 0.31
GGA3-220ENST00000613421 FKBP5Q13451 457 aaPredicted RBP16.96■□□□□ 0.31
GGA3-220ENST00000613421 C22orf23Q9BZE7 217 aa16.96■□□□□ 0.31
GGA3-220ENST00000613421 PRAM1Q96QH2 718 aa16.96■□□□□ 0.31
GGA3-220ENST00000613421 NECTIN2Q92692 538 aa16.96■□□□□ 0.3
GGA3-220ENST00000613421 TSPYL4Q9UJ04 414 aa16.96■□□□□ 0.3
GGA3-220ENST00000613421 NCOA1Q15788 1441 aa16.95■□□□□ 0.3
GGA3-220ENST00000613421 RPRD2Q5VT52 1461 aaKnown RBP16.95■□□□□ 0.3
GGA3-220ENST00000613421 BCAR3O75815 825 aa16.95■□□□□ 0.3
GGA3-220ENST00000613421 EXOSC9Q06265 439 aaKnown RBP16.95■□□□□ 0.3
GGA3-220ENST00000613421 PRKAR2BP31323 418 aa16.93■□□□□ 0.3
GGA3-220ENST00000613421 C9orf78Q9NZ63 289 aaPredicted RBP16.93■□□□□ 0.3
GGA3-220ENST00000613421 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.93■□□□□ 0.3
GGA3-220ENST00000613421 DIAPH3Q9NSV4 1193 aa16.93■□□□□ 0.3
GGA3-220ENST00000613421 INTS3Q68E01 1043 aaKnown RBP16.92■□□□□ 0.3
GGA3-220ENST00000613421 NEXNQ0ZGT2 675 aa16.92■□□□□ 0.3
GGA3-220ENST00000613421 NFKBIBQ15653 356 aa16.91■□□□□ 0.3
GGA3-220ENST00000613421 RPGRIP1LQ68CZ1 1315 aa16.91■□□□□ 0.3
GGA3-220ENST00000613421 NINLQ9Y2I6 1382 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms