RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 KIF1BO60333 1816 aa12.94□□□□□ -0.34
SMAD4-217ENST00000611848 CLTCL1P53675 1640 aa12.93□□□□□ -0.34
SMAD4-217ENST00000611848 TXNDC2Q86VQ3 553 aa12.93□□□□□ -0.34
SMAD4-217ENST00000611848 MED14O60244 1454 aa12.93□□□□□ -0.34
SMAD4-217ENST00000611848 SCAF11Q99590 1463 aaKnown RBP12.93□□□□□ -0.34
SMAD4-217ENST00000611848 LTKP29376 864 aa12.92□□□□□ -0.34
SMAD4-217ENST00000611848 NEURL4Q96JN8 1562 aa12.92□□□□□ -0.34
SMAD4-217ENST00000611848 CCDC144AA2RUR9 1427 aa12.91□□□□□ -0.34
SMAD4-217ENST00000611848 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.91□□□□□ -0.34
SMAD4-217ENST00000611848 NPHP4O75161 1426 aaPredicted RBP12.9□□□□□ -0.34
SMAD4-217ENST00000611848 ZFYVE9O95405 1425 aa12.9□□□□□ -0.34
SMAD4-217ENST00000611848 RIMS2Q9UQ26 1411 aa12.9□□□□□ -0.34
SMAD4-217ENST00000611848 ZNF326Q5BKZ1 582 aaKnown RBP12.89□□□□□ -0.35
SMAD4-217ENST00000611848 IQGAP1P46940 1657 aa12.89□□□□□ -0.35
SMAD4-217ENST00000611848 ANKRD30BQ9BXX2 1392 aa12.88□□□□□ -0.35
SMAD4-217ENST00000611848 PPP1R15AO75807 674 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-217ENST00000611848 RPGRIP1LQ68CZ1 1315 aa12.87□□□□□ -0.35
SMAD4-217ENST00000611848 PLEKHG1Q9ULL1 1385 aa12.86□□□□□ -0.35
SMAD4-217ENST00000611848 SPATA31E1Q6ZUB1 1445 aa12.84□□□□□ -0.35
SMAD4-217ENST00000611848 NUTM2DQ5VT03 806 aaPredicted RBP12.84□□□□□ -0.35
SMAD4-217ENST00000611848 BCANQ96GW7 911 aa12.84□□□□□ -0.35
SMAD4-217ENST00000611848 NEXMIFQ5QGS0 1516 aa12.83□□□□□ -0.36
SMAD4-217ENST00000611848 VGFO15240 615 aaPredicted RBP12.82□□□□□ -0.36
SMAD4-217ENST00000611848 RGL3Q3MIN7 710 aa12.82□□□□□ -0.36
SMAD4-217ENST00000611848 PPLO60437 1756 aa12.82□□□□□ -0.36
SMAD4-217ENST00000611848 ZNF335Q9H4Z2 1342 aaPredicted RBP12.81□□□□□ -0.36
SMAD4-217ENST00000611848 DHX57Q6P158 1386 aaKnown RBP12.8□□□□□ -0.36
SMAD4-217ENST00000611848 LTBP4Q8N2S1 1624 aa12.8□□□□□ -0.36
SMAD4-217ENST00000611848 SLC26A8Q96RN1 970 aa12.8□□□□□ -0.36
SMAD4-217ENST00000611848 TBX22Q9Y458 520 aa12.8□□□□□ -0.36
SMAD4-217ENST00000611848 ADAMTS13Q76LX8 1427 aa12.79□□□□□ -0.36
SMAD4-217ENST00000611848 DIP2AQ14689 1571 aa12.79□□□□□ -0.36
SMAD4-217ENST00000611848 SETBP1Q9Y6X0 1596 aa12.79□□□□□ -0.36
SMAD4-217ENST00000611848 IFT172Q9UG01 1749 aa12.78□□□□□ -0.36
SMAD4-217ENST00000611848 CPS1P31327 1500 aa12.78□□□□□ -0.36
SMAD4-217ENST00000611848 CERKQ8TCT0 537 aa12.77□□□□□ -0.36
SMAD4-217ENST00000611848 PIK3R4Q99570 1358 aa12.77□□□□□ -0.37
SMAD4-217ENST00000611848 KCNA6P17658 529 aa12.77□□□□□ -0.37
SMAD4-217ENST00000611848 STAC3Q96MF2 364 aa12.77□□□□□ -0.37
SMAD4-217ENST00000611848 NRXN3Q9Y4C0 1643 aa12.76□□□□□ -0.37
SMAD4-217ENST00000611848 CHD2O14647 1828 aaKnown RBP12.76□□□□□ -0.37
SMAD4-217ENST00000611848 STRCP1A6NGW2 1772 aa12.75□□□□□ -0.37
SMAD4-217ENST00000611848 ADGRF5Q8IZF2 1346 aa12.74□□□□□ -0.37
SMAD4-217ENST00000611848 IQSEC2Q5JU85 1478 aa12.74□□□□□ -0.37
SMAD4-217ENST00000611848 MYOM2P54296 1465 aa12.74□□□□□ -0.37
SMAD4-217ENST00000611848 NWD1Q149M9 1564 aa12.74□□□□□ -0.37
SMAD4-217ENST00000611848 ALKQ9UM73 1620 aa12.72□□□□□ -0.37
SMAD4-217ENST00000611848 PPP4R3CPQ6ZMV5 832 aa12.72□□□□□ -0.37
SMAD4-217ENST00000611848 DCAF11Q8TEB1 546 aa12.72□□□□□ -0.37
SMAD4-217ENST00000611848 SIN3AQ96ST3 1273 aa12.72□□□□□ -0.37
SMAD4-217ENST00000611848 NKTRP30414 1462 aaKnown RBP12.72□□□□□ -0.37
SMAD4-217ENST00000611848 NRXN1Q9ULB1 1477 aa12.72□□□□□ -0.37
SMAD4-217ENST00000611848 CLSPNQ9HAW4 1339 aa12.71□□□□□ -0.37
SMAD4-217ENST00000611848 PIK3C2GO75747 1445 aa12.71□□□□□ -0.37
SMAD4-217ENST00000611848 LRRC7Q96NW7 1537 aa12.71□□□□□ -0.38
SMAD4-217ENST00000611848 SETD1AO15047 1707 aaKnown RBP12.71□□□□□ -0.38
SMAD4-217ENST00000611848 METP08581 1390 aa12.7□□□□□ -0.38
SMAD4-217ENST00000611848 AMOTL2Q9Y2J4 779 aa12.7□□□□□ -0.38
SMAD4-217ENST00000611848 NEUROD1Q13562 356 aa12.7□□□□□ -0.38
SMAD4-217ENST00000611848 PROSER2Q86WR7 435 aaPredicted RBP12.7□□□□□ -0.38
SMAD4-217ENST00000611848 KDM2AQ9Y2K7 1162 aa12.7□□□□□ -0.38
SMAD4-217ENST00000611848 PTPRUQ92729 1446 aa12.69□□□□□ -0.38
SMAD4-217ENST00000611848 NCBP3Q53F19 620 aaKnown RBP12.69□□□□□ -0.38
SMAD4-217ENST00000611848 C14orf93Q9H972 538 aaKnown RBP12.69□□□□□ -0.38
SMAD4-217ENST00000611848 XRN1Q8IZH2 1706 aaKnown RBP12.67□□□□□ -0.38
SMAD4-217ENST00000611848 LAMC1P11047 1609 aa12.67□□□□□ -0.38
SMAD4-217ENST00000611848 XIRP1Q702N8 1843 aaKnown RBP12.67□□□□□ -0.38
SMAD4-217ENST00000611848 TMEM94Q12767 1356 aa12.67□□□□□ -0.38
SMAD4-217ENST00000611848 NCOA3Q9Y6Q9 1424 aa12.66□□□□□ -0.38
SMAD4-217ENST00000611848 FBXO41Q8TF61 875 aa12.66□□□□□ -0.38
SMAD4-217ENST00000611848 L3MBTL2Q969R5 705 aa12.66□□□□□ -0.38
SMAD4-217ENST00000611848 CFAP70Q5T0N1 1121 aa12.66□□□□□ -0.38
SMAD4-217ENST00000611848 PRAG1Q86YV5 1406 aa12.64□□□□□ -0.39
SMAD4-217ENST00000611848 TOM1O60784 492 aa12.64□□□□□ -0.39
SMAD4-217ENST00000611848 TMEM132EQ6IEE7 984 aa12.64□□□□□ -0.39
SMAD4-217ENST00000611848 PTCH1Q13635 1447 aa12.64□□□□□ -0.39
SMAD4-217ENST00000611848 LRPPRCP42704 1394 aaKnown RBP12.63□□□□□ -0.39
SMAD4-217ENST00000611848 TONSLQ96HA7 1378 aa12.63□□□□□ -0.39
SMAD4-217ENST00000611848 ABCC11Q96J66 1382 aa12.63□□□□□ -0.39
SMAD4-217ENST00000611848 ASXL1Q8IXJ9 1541 aa12.63□□□□□ -0.39
SMAD4-217ENST00000611848 UBAP1LF5GYI3 381 aa12.62□□□□□ -0.39
SMAD4-217ENST00000611848 RBM33Q96EV2 1170 aaKnown RBP12.62□□□□□ -0.39
SMAD4-217ENST00000611848 MSH6P52701 1360 aa12.62□□□□□ -0.39
SMAD4-217ENST00000611848 TECPR2O15040 1411 aa12.62□□□□□ -0.39
SMAD4-217ENST00000611848 YTHDC2Q9H6S0 1430 aaKnown RBP12.62□□□□□ -0.39
SMAD4-217ENST00000611848 KIAA1210Q9ULL0 1709 aa12.62□□□□□ -0.39
SMAD4-217ENST00000611848 KNDC1Q76NI1 1749 aa12.61□□□□□ -0.39
SMAD4-217ENST00000611848 C14orf37Q86TY3 774 aa12.61□□□□□ -0.39
SMAD4-217ENST00000611848 SIRT1Q96EB6 747 aa12.61□□□□□ -0.39
SMAD4-217ENST00000611848 C19orf44Q9H6X5 657 aa12.61□□□□□ -0.39
SMAD4-217ENST00000611848 ADGRB1O14514 1584 aa12.6□□□□□ -0.39
SMAD4-217ENST00000611848 ROBO2Q9HCK4 1378 aa12.6□□□□□ -0.39
SMAD4-217ENST00000611848 STK26Q9P289 416 aa12.6□□□□□ -0.39
SMAD4-217ENST00000611848 ZNF316A6NFI3 1004 aaPredicted RBP12.59□□□□□ -0.39
SMAD4-217ENST00000611848 TIMELESSQ9UNS1 1208 aa12.59□□□□□ -0.39
SMAD4-217ENST00000611848 FAM135BQ49AJ0 1406 aa12.58□□□□□ -0.4
SMAD4-217ENST00000611848 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.58□□□□□ -0.4
SMAD4-217ENST00000611848 ILDR1Q86SU0 546 aaPredicted RBP12.58□□□□□ -0.4
SMAD4-217ENST00000611848 CADPS2Q86UW7 1296 aa12.58□□□□□ -0.4
SMAD4-217ENST00000611848 DCCP43146 1447 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms