RNA–Protein interactions for RNA: ENST00000611614.4

COPS7B-223, Transcript of COP9 signalosome subunit 7B, human

TSL 3 BASIC

Gene COPS7B, Length 2,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-223	ENST00000611614	FBXO31	Q5XUX0	539 aa	Predicted RBP	19.02	■□□□□ 0.64
COPS7B-223	ENST00000611614	RPGRIP1L	Q68CZ1	1315 aa		19.02	■□□□□ 0.63
COPS7B-223	ENST00000611614	CLTC	Q00610	1675 aa	Known RBP	19.01	■□□□□ 0.63
COPS7B-223	ENST00000611614	IDI1	Q13907	227 aa		19.01	■□□□□ 0.63
COPS7B-223	ENST00000611614	HNRNPU	Q00839	825 aa	Known RBP eCLIP	19	■□□□□ 0.63
COPS7B-223	ENST00000611614	STAG3	Q9UJ98	1225 aa		19	■□□□□ 0.63
COPS7B-223	ENST00000611614	ADGRB3	O60242	1522 aa		18.99	■□□□□ 0.63
COPS7B-223	ENST00000611614	SYNM	O15061	1565 aa		18.99	■□□□□ 0.63
COPS7B-223	ENST00000611614	NBPF1	Q3BBV0	1214 aa		18.99	■□□□□ 0.63
COPS7B-223	ENST00000611614	ZMYM3	Q14202	1370 aa		18.99	■□□□□ 0.63
COPS7B-223	ENST00000611614	ERVK-7	P63135	1459 aa		18.99	■□□□□ 0.63
COPS7B-223	ENST00000611614	PREX1	Q8TCU6	1659 aa		18.99	■□□□□ 0.63
COPS7B-223	ENST00000611614	TRPM1	Q7Z4N2	1603 aa		18.99	■□□□□ 0.63
COPS7B-223	ENST00000611614	GPRASP1	Q5JY77	1395 aa		18.97	■□□□□ 0.63
COPS7B-223	ENST00000611614	MYOM2	P54296	1465 aa		18.97	■□□□□ 0.63
COPS7B-223	ENST00000611614	CCDC184	Q52MB2	194 aa		18.96	■□□□□ 0.63
COPS7B-223	ENST00000611614	PIK3C2B	O00750	1634 aa		18.96	■□□□□ 0.63
COPS7B-223	ENST00000611614	VGF	O15240	615 aa	Predicted RBP	18.95	■□□□□ 0.62
COPS7B-223	ENST00000611614	MADD	Q8WXG6	1647 aa		18.95	■□□□□ 0.62
COPS7B-223	ENST00000611614	ST20-MTHFS	A0A0A6YYL1	179 aa		18.94	■□□□□ 0.62
COPS7B-223	ENST00000611614	ADGRF5	Q8IZF2	1346 aa		18.94	■□□□□ 0.62
COPS7B-223	ENST00000611614	MROH2A	A6NES4	1674 aa		18.94	■□□□□ 0.62
COPS7B-223	ENST00000611614	BCAN	Q96GW7	911 aa		18.94	■□□□□ 0.62
COPS7B-223	ENST00000611614	MRS2	Q9HD23	443 aa		18.93	■□□□□ 0.62
COPS7B-223	ENST00000611614	SPATA31D1	Q6ZQQ2	1576 aa		18.91	■□□□□ 0.62
COPS7B-223	ENST00000611614	LAMC1	P11047	1609 aa		18.9	■□□□□ 0.62
COPS7B-223	ENST00000611614	CFAP70	Q5T0N1	1121 aa		18.9	■□□□□ 0.62
COPS7B-223	ENST00000611614	POLR3GL	Q9BT43	218 aa		18.89	■□□□□ 0.61
COPS7B-223	ENST00000611614	IFT172	Q9UG01	1749 aa		18.88	■□□□□ 0.61
COPS7B-223	ENST00000611614	NRXN1	Q9ULB1	1477 aa		18.88	■□□□□ 0.61
COPS7B-223	ENST00000611614	FAM9B	Q8IZU0	186 aa		18.88	■□□□□ 0.61
COPS7B-223	ENST00000611614	TNR	Q92752	1358 aa		18.87	■□□□□ 0.61
COPS7B-223	ENST00000611614	NUTM2D	Q5VT03	806 aa	Predicted RBP	18.87	■□□□□ 0.61
COPS7B-223	ENST00000611614	EIF3A	Q14152	1382 aa	Known RBP	18.86	■□□□□ 0.61
COPS7B-223	ENST00000611614	PPL	O60437	1756 aa		18.86	■□□□□ 0.61
COPS7B-223	ENST00000611614	KIAA1210	Q9ULL0	1709 aa		18.86	■□□□□ 0.61
COPS7B-223	ENST00000611614	TMEM131L	A2VDJ0	1609 aa		18.86	■□□□□ 0.61
COPS7B-223	ENST00000611614	SCAF11	Q99590	1463 aa	Known RBP	18.85	■□□□□ 0.61
COPS7B-223	ENST00000611614	C14orf93	Q9H972	538 aa	Known RBP	18.85	■□□□□ 0.61
COPS7B-223	ENST00000611614	PIK3C2G	O75747	1445 aa		18.85	■□□□□ 0.61
COPS7B-223	ENST00000611614	RBM19	Q9Y4C8	960 aa	Known RBP	18.84	■□□□□ 0.61
COPS7B-223	ENST00000611614	NEXMIF	Q5QGS0	1516 aa		18.84	■□□□□ 0.61
COPS7B-223	ENST00000611614	ZFYVE9	O95405	1425 aa		18.83	■□□□□ 0.61
COPS7B-223	ENST00000611614	HDGF	P51858	240 aa	Known RBP	18.83	■□□□□ 0.6
COPS7B-223	ENST00000611614	PLPPR3	Q6T4P5	718 aa		18.83	■□□□□ 0.6
COPS7B-223	ENST00000611614	CEBPA	P49715	358 aa	Predicted RBP	18.82	■□□□□ 0.6
COPS7B-223	ENST00000611614	ZBED9	Q6R2W3	1325 aa		18.82	■□□□□ 0.6
COPS7B-223	ENST00000611614	TMF1	P82094	1093 aa		18.82	■□□□□ 0.6
COPS7B-223	ENST00000611614	A2ML1	A8K2U0	1454 aa		18.81	■□□□□ 0.6
COPS7B-223	ENST00000611614	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	18.8	■□□□□ 0.6
COPS7B-223	ENST00000611614	FER1L4	A9Z1Z3	1794 aa		18.8	■□□□□ 0.6
COPS7B-223	ENST00000611614	ERICH6B	Q5W0A0	696 aa		18.8	■□□□□ 0.6
COPS7B-223	ENST00000611614	MYO5B	Q9ULV0	1848 aa		18.78	■□□□□ 0.6
COPS7B-223	ENST00000611614	TESK2	Q96S53	571 aa		18.78	■□□□□ 0.6
COPS7B-223	ENST00000611614	SETBP1	Q9Y6X0	1596 aa		18.77	■□□□□ 0.6
COPS7B-223	ENST00000611614	RIMS2	Q9UQ26	1411 aa		18.77	■□□□□ 0.6
COPS7B-223	ENST00000611614	CDCA8	Q53HL2	280 aa		18.77	■□□□□ 0.6
COPS7B-223	ENST00000611614	NLRP1	Q9C000	1473 aa		18.77	■□□□□ 0.59
COPS7B-223	ENST00000611614	IQGAP1	P46940	1657 aa		18.76	■□□□□ 0.59
COPS7B-223	ENST00000611614	TMEM132E	Q6IEE7	984 aa		18.76	■□□□□ 0.59
COPS7B-223	ENST00000611614	SENP3	Q9H4L4	574 aa	Predicted RBP	18.75	■□□□□ 0.59
COPS7B-223	ENST00000611614	TRAK1	Q9UPV9	953 aa		18.75	■□□□□ 0.59
COPS7B-223	ENST00000611614	KTN1	Q86UP2	1357 aa	Known RBP	18.74	■□□□□ 0.59
COPS7B-223	ENST00000611614	C3	P01024	1663 aa		18.74	■□□□□ 0.59
COPS7B-223	ENST00000611614	CNGB1	Q14028	1251 aa	Predicted RBP	18.73	■□□□□ 0.59
COPS7B-223	ENST00000611614	CENPJ	Q9HC77	1338 aa	Predicted RBP	18.72	■□□□□ 0.59
COPS7B-223	ENST00000611614	DISP3	Q9P2K9	1392 aa		18.71	■□□□□ 0.59
COPS7B-223	ENST00000611614	RALBP1	Q15311	655 aa		18.71	■□□□□ 0.58
COPS7B-223	ENST00000611614	TMEM2	Q9UHN6	1383 aa		18.7	■□□□□ 0.58
COPS7B-223	ENST00000611614	ADGRB1	O14514	1584 aa		18.7	■□□□□ 0.58
COPS7B-223	ENST00000611614	KDM5A	P29375	1690 aa	Known RBP	18.7	■□□□□ 0.58
COPS7B-223	ENST00000611614	EID1	Q9Y6B2	187 aa		18.69	■□□□□ 0.58
COPS7B-223	ENST00000611614	FANCI	Q9NVI1	1328 aa		18.69	■□□□□ 0.58
COPS7B-223	ENST00000611614	THEMIS	Q8N1K5	641 aa	Predicted RBP	18.69	■□□□□ 0.58
COPS7B-223	ENST00000611614	PNISR	Q8TF01	805 aa	Known RBP	18.68	■□□□□ 0.58
COPS7B-223	ENST00000611614	IRX6	P78412	446 aa	Predicted RBP	18.68	■□□□□ 0.58
COPS7B-223	ENST00000611614	TMC1	Q8TDI8	760 aa		18.68	■□□□□ 0.58
COPS7B-223	ENST00000611614	STK26	Q9P289	416 aa		18.68	■□□□□ 0.58
COPS7B-223	ENST00000611614	MYBBP1A	Q9BQG0	1328 aa	Known RBP	18.67	■□□□□ 0.58
COPS7B-223	ENST00000611614	BRD4	O60885	1362 aa	Predicted RBP	18.67	■□□□□ 0.58
COPS7B-223	ENST00000611614	RIMS1	Q86UR5	1692 aa	Known RBP	18.67	■□□□□ 0.58
COPS7B-223	ENST00000611614	UBR1	Q8IWV7	1749 aa		18.66	■□□□□ 0.58
COPS7B-223	ENST00000611614	SBNO2	Q9Y2G9	1366 aa		18.66	■□□□□ 0.58
COPS7B-223	ENST00000611614	ALK	Q9UM73	1620 aa		18.65	■□□□□ 0.58
COPS7B-223	ENST00000611614	SMG6	Q86US8	1419 aa	Known RBP	18.65	■□□□□ 0.58
COPS7B-223	ENST00000611614	TXNDC2	Q86VQ3	553 aa		18.65	■□□□□ 0.58
COPS7B-223	ENST00000611614	ADAMTSL3	P82987	1691 aa		18.63	■□□□□ 0.57
COPS7B-223	ENST00000611614	POGK	Q9P215	609 aa		18.63	■□□□□ 0.57
COPS7B-223	ENST00000611614	YTHDC2	Q9H6S0	1430 aa	Known RBP	18.63	■□□□□ 0.57
COPS7B-223	ENST00000611614	ERICH6	Q7L0X2	663 aa		18.62	■□□□□ 0.57
COPS7B-223	ENST00000611614	LRPPRC	P42704	1394 aa	Known RBP	18.62	■□□□□ 0.57
COPS7B-223	ENST00000611614	MYO3A	Q8NEV4	1616 aa		18.62	■□□□□ 0.57
COPS7B-223	ENST00000611614	PPP4R2	Q9NY27	417 aa		18.61	■□□□□ 0.57
COPS7B-223	ENST00000611614	PARD3	Q8TEW0	1356 aa		18.61	■□□□□ 0.57
COPS7B-223	ENST00000611614	PER1	O15534	1290 aa	Predicted RBP	18.61	■□□□□ 0.57
COPS7B-223	ENST00000611614	EVC2	Q86UK5	1308 aa		18.59	■□□□□ 0.57
COPS7B-223	ENST00000611614	LTK	P29376	864 aa		18.59	■□□□□ 0.57
COPS7B-223	ENST00000611614	SAFB2	Q14151	953 aa	Known RBP eCLIP	18.59	■□□□□ 0.57
COPS7B-223	ENST00000611614	PANK3	Q9H999	370 aa		18.59	■□□□□ 0.57
COPS7B-223	ENST00000611614	NUDC	Q9Y266	331 aa		18.59	■□□□□ 0.57

Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms