RNA–Protein interactions for RNA: ENST00000607212.1

CTSA-216, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 590 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-216ENST00000607212 TET3O43151 1660 aa22.87■■□□□ 1.25
CTSA-216ENST00000607212 GCC2Q8IWJ2 1684 aa22.86■■□□□ 1.25
CTSA-216ENST00000607212 RPRD2Q5VT52 1461 aaKnown RBP22.85■■□□□ 1.25
CTSA-216ENST00000607212 ITGAEP38570 1179 aa22.84■■□□□ 1.25
CTSA-216ENST00000607212 HDGFP51858 240 aaKnown RBP22.84■■□□□ 1.25
CTSA-216ENST00000607212 RIMS2Q9UQ26 1411 aa22.81■■□□□ 1.24
CTSA-216ENST00000607212 UNC13BO14795 1591 aa22.8■■□□□ 1.24
CTSA-216ENST00000607212 MSH6P52701 1360 aa22.79■■□□□ 1.24
CTSA-216ENST00000607212 NKTRP30414 1462 aaKnown RBP22.79■■□□□ 1.24
CTSA-216ENST00000607212 ROBO1Q9Y6N7 1651 aa22.78■■□□□ 1.24
CTSA-216ENST00000607212 FAM135BQ49AJ0 1406 aa22.78■■□□□ 1.24
CTSA-216ENST00000607212 NWD1Q149M9 1564 aa22.77■■□□□ 1.24
CTSA-216ENST00000607212 NUTM2DQ5VT03 806 aaPredicted RBP22.77■■□□□ 1.24
CTSA-216ENST00000607212 C14orf37Q86TY3 774 aa22.77■■□□□ 1.24
CTSA-216ENST00000607212 PLEKHG1Q9ULL1 1385 aa22.76■■□□□ 1.23
CTSA-216ENST00000607212 TMEM131LA2VDJ0 1609 aa22.76■■□□□ 1.23
CTSA-216ENST00000607212 PPARGC1BQ86YN6 1023 aaKnown RBP22.76■■□□□ 1.23
CTSA-216ENST00000607212 E9PCH4 1651 aa22.76■■□□□ 1.23
CTSA-216ENST00000607212 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.75■■□□□ 1.23
CTSA-216ENST00000607212 ZFYVE9O95405 1425 aa22.74■■□□□ 1.23
CTSA-216ENST00000607212 CHD2O14647 1828 aaKnown RBP22.73■■□□□ 1.23
CTSA-216ENST00000607212 NUP155O75694 1391 aa22.72■■□□□ 1.23
CTSA-216ENST00000607212 ROCK1Q13464 1354 aa22.72■■□□□ 1.23
CTSA-216ENST00000607212 IQGAP3Q86VI3 1631 aa22.71■■□□□ 1.23
CTSA-216ENST00000607212 PHLPP1O60346 1717 aa22.7■■□□□ 1.22
CTSA-216ENST00000607212 SLAIN2Q9P270 581 aa22.69■■□□□ 1.22
CTSA-216ENST00000607212 TBX22Q9Y458 520 aa22.67■■□□□ 1.22
CTSA-216ENST00000607212 RGS17Q9UGC6 210 aaPredicted RBP22.64■■□□□ 1.21
CTSA-216ENST00000607212 DIP2AQ14689 1571 aa22.63■■□□□ 1.21
CTSA-216ENST00000607212 ZNF326Q5BKZ1 582 aaKnown RBP22.63■■□□□ 1.21
CTSA-216ENST00000607212 ATF3P18847 181 aa22.62■■□□□ 1.21
CTSA-216ENST00000607212 TRPM2O94759 1503 aa22.61■■□□□ 1.21
CTSA-216ENST00000607212 ADAMTS13Q76LX8 1427 aa22.6■■□□□ 1.21
CTSA-216ENST00000607212 SPHKAPQ2M3C7 1700 aa22.6■■□□□ 1.21
CTSA-216ENST00000607212 JCADQ9P266 1359 aa22.59■■□□□ 1.21
CTSA-216ENST00000607212 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.58■■□□□ 1.21
CTSA-216ENST00000607212 CADPS2Q86UW7 1296 aa22.58■■□□□ 1.21
CTSA-216ENST00000607212 PIK3R4Q99570 1358 aa22.58■■□□□ 1.21
CTSA-216ENST00000607212 NCOA3Q9Y6Q9 1424 aa22.57■■□□□ 1.2
CTSA-216ENST00000607212 MEX3CQ5U5Q3 659 aaKnown RBP22.57■■□□□ 1.2
CTSA-216ENST00000607212 POTEAQ6S8J7 498 aa22.57■■□□□ 1.2
CTSA-216ENST00000607212 AMOTL2Q9Y2J4 779 aa22.57■■□□□ 1.2
CTSA-216ENST00000607212 C19orf44Q9H6X5 657 aa22.56■■□□□ 1.2
CTSA-216ENST00000607212 COL16A1Q07092 1604 aaPredicted RBP22.53■■□□□ 1.2
CTSA-216ENST00000607212 PTPRUQ92729 1446 aa22.5■■□□□ 1.19
CTSA-216ENST00000607212 KIF1BO60333 1816 aa22.48■■□□□ 1.19
CTSA-216ENST00000607212 TRIM52Q96A61 297 aa22.48■■□□□ 1.19
CTSA-216ENST00000607212 SPATA31A6Q5VVP1 1343 aa22.47■■□□□ 1.19
CTSA-216ENST00000607212 SETBP1Q9Y6X0 1596 aa22.46■■□□□ 1.19
CTSA-216ENST00000607212 CLTCL1P53675 1640 aa22.46■■□□□ 1.19
CTSA-216ENST00000607212 NRXN3Q9Y4C0 1643 aa22.46■■□□□ 1.19
CTSA-216ENST00000607212 AHDC1Q5TGY3 1603 aaPredicted RBP22.46■■□□□ 1.19
CTSA-216ENST00000607212 SETD1AO15047 1707 aaKnown RBP22.45■■□□□ 1.19
CTSA-216ENST00000607212 NUTM2BA6NNL0 878 aaPredicted RBP22.45■■□□□ 1.18
CTSA-216ENST00000607212 NUTM2EB1AL46 878 aaPredicted RBP22.45■■□□□ 1.18
CTSA-216ENST00000607212 NUTM2AQ8IVF1 878 aaPredicted RBP22.45■■□□□ 1.18
CTSA-216ENST00000607212 XRN1Q8IZH2 1706 aaKnown RBP22.45■■□□□ 1.18
CTSA-216ENST00000607212 BRINP3Q76B58 766 aa22.44■■□□□ 1.18
CTSA-216ENST00000607212 SHPRHQ149N8 1683 aa22.43■■□□□ 1.18
CTSA-216ENST00000607212 METP08581 1390 aa22.42■■□□□ 1.18
CTSA-216ENST00000607212 LRP6O75581 1613 aa22.42■■□□□ 1.18
CTSA-216ENST00000607212 DCCP43146 1447 aa22.41■■□□□ 1.18
CTSA-216ENST00000607212 ZNF772Q68DY9 489 aaPredicted RBP22.41■■□□□ 1.18
CTSA-216ENST00000607212 NEXMIFQ5QGS0 1516 aa22.41■■□□□ 1.18
CTSA-216ENST00000607212 RRBP1Q9P2E9 1410 aaKnown RBP22.4■■□□□ 1.18
CTSA-216ENST00000607212 NAIPQ13075 1403 aa22.4■■□□□ 1.18
CTSA-216ENST00000607212 ASXL1Q8IXJ9 1541 aa22.39■■□□□ 1.17
CTSA-216ENST00000607212 SLC4A1APQ9BWU0 796 aaKnown RBP22.36■■□□□ 1.17
CTSA-216ENST00000607212 MST1RQ04912 1400 aa22.36■■□□□ 1.17
CTSA-216ENST00000607212 ADGRL3Q9HAR2 1447 aa22.35■■□□□ 1.17
CTSA-216ENST00000607212 NALCNQ8IZF0 1738 aa22.34■■□□□ 1.17
CTSA-216ENST00000607212 VGFO15240 615 aaPredicted RBP22.34■■□□□ 1.17
CTSA-216ENST00000607212 NHSL1Q5SYE7 1610 aa22.33■■□□□ 1.17
CTSA-216ENST00000607212 DDX17Q92841 729 aaKnown RBP22.32■■□□□ 1.16
CTSA-216ENST00000607212 LRRC59Q96AG4 307 aaKnown RBP22.32■■□□□ 1.16
CTSA-216ENST00000607212 RXRBP28702 533 aa22.3■■□□□ 1.16
CTSA-216ENST00000607212 HFM1A2PYH4 1435 aa22.29■■□□□ 1.16
CTSA-216ENST00000607212 SETD5Q9C0A6 1442 aa22.29■■□□□ 1.16
CTSA-216ENST00000607212 C8orf37Q96NL8 207 aa22.28■■□□□ 1.16
CTSA-216ENST00000607212 AFF2P51816 1311 aa22.28■■□□□ 1.16
CTSA-216ENST00000607212 RPGRIP1LQ68CZ1 1315 aa22.27■■□□□ 1.16
CTSA-216ENST00000607212 PPLO60437 1756 aa22.26■■□□□ 1.15
CTSA-216ENST00000607212 PTCH1Q13635 1447 aa22.25■■□□□ 1.15
CTSA-216ENST00000607212 FOXD1Q16676 465 aa22.25■■□□□ 1.15
CTSA-216ENST00000607212 C1orf167Q5SNV9 1468 aa22.24■■□□□ 1.15
CTSA-216ENST00000607212 ROBO2Q9HCK4 1378 aa22.24■■□□□ 1.15
CTSA-216ENST00000607212 PNPLA6Q8IY17 1366 aa22.23■■□□□ 1.15
CTSA-216ENST00000607212 ADAMTS2O95450 1211 aa22.22■■□□□ 1.15
CTSA-216ENST00000607212 RGL3Q3MIN7 710 aa22.21■■□□□ 1.15
CTSA-216ENST00000607212 ORAI2Q96SN7 254 aa22.21■■□□□ 1.15
CTSA-216ENST00000607212 NGLY1Q96IV0 654 aa22.2■■□□□ 1.14
CTSA-216ENST00000607212 UPF1Q92900 1129 aaKnown RBP eCLIP22.19■■□□□ 1.14
CTSA-216ENST00000607212 CCDC144AA2RUR9 1427 aa22.19■■□□□ 1.14
CTSA-216ENST00000607212 QTRT2Q9H974 415 aaKnown RBP22.18■■□□□ 1.14
CTSA-216ENST00000607212 STK26Q9P289 416 aa22.18■■□□□ 1.14
CTSA-216ENST00000607212 ESCO1Q5FWF5 840 aa22.16■■□□□ 1.14
CTSA-216ENST00000607212 RBM6P78332 1123 aaKnown RBP22.14■■□□□ 1.13
CTSA-216ENST00000607212 CDK12Q9NYV4 1490 aaPredicted RBP22.14■■□□□ 1.13
CTSA-216ENST00000607212 ADGRF5Q8IZF2 1346 aa22.13■■□□□ 1.13
CTSA-216ENST00000607212 NUTM2FA1L443 756 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms