RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 UNC13BO14795 1591 aa11.62□□□□□ -0.55
CUX1-219ENST00000606749 RBM33Q96EV2 1170 aaKnown RBP11.62□□□□□ -0.55
CUX1-219ENST00000606749 ZFYVE9O95405 1425 aa11.61□□□□□ -0.55
CUX1-219ENST00000606749 RIMS2Q9UQ26 1411 aa11.61□□□□□ -0.55
CUX1-219ENST00000606749 PPP1R15AO75807 674 aaPredicted RBP11.61□□□□□ -0.55
CUX1-219ENST00000606749 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.61□□□□□ -0.55
CUX1-219ENST00000606749 TMEM94Q12767 1356 aa11.61□□□□□ -0.55
CUX1-219ENST00000606749 PLEKHG1Q9ULL1 1385 aa11.61□□□□□ -0.55
CUX1-219ENST00000606749 GCC2Q8IWJ2 1684 aa11.6□□□□□ -0.55
CUX1-219ENST00000606749 NUTM2DQ5VT03 806 aaPredicted RBP11.6□□□□□ -0.55
CUX1-219ENST00000606749 TBX22Q9Y458 520 aa11.6□□□□□ -0.55
CUX1-219ENST00000606749 XIRP1Q702N8 1843 aaKnown RBP11.6□□□□□ -0.55
CUX1-219ENST00000606749 TMEM131LA2VDJ0 1609 aa11.6□□□□□ -0.55
CUX1-219ENST00000606749 E9PCH4 1651 aa11.59□□□□□ -0.55
CUX1-219ENST00000606749 IQGAP3Q86VI3 1631 aa11.58□□□□□ -0.56
CUX1-219ENST00000606749 FAM135BQ49AJ0 1406 aa11.58□□□□□ -0.56
CUX1-219ENST00000606749 MYO5BQ9ULV0 1848 aa11.58□□□□□ -0.56
CUX1-219ENST00000606749 RRBP1Q9P2E9 1410 aaKnown RBP11.57□□□□□ -0.56
CUX1-219ENST00000606749 MED1Q15648 1581 aaPredicted RBP11.57□□□□□ -0.56
CUX1-219ENST00000606749 SLAIN2Q9P270 581 aa11.55□□□□□ -0.56
CUX1-219ENST00000606749 NKTRP30414 1462 aaKnown RBP11.55□□□□□ -0.56
CUX1-219ENST00000606749 NWD1Q149M9 1564 aa11.54□□□□□ -0.56
CUX1-219ENST00000606749 ADAMTS13Q76LX8 1427 aa11.54□□□□□ -0.56
CUX1-219ENST00000606749 MSH6P52701 1360 aa11.54□□□□□ -0.56
CUX1-219ENST00000606749 NAIPQ13075 1403 aa11.53□□□□□ -0.56
CUX1-219ENST00000606749 PHF23Q9BUL5 403 aaPredicted RBP11.53□□□□□ -0.56
CUX1-219ENST00000606749 CHD2O14647 1828 aaKnown RBP11.53□□□□□ -0.56
CUX1-219ENST00000606749 ZNF326Q5BKZ1 582 aaKnown RBP11.52□□□□□ -0.57
CUX1-219ENST00000606749 AMOTL2Q9Y2J4 779 aa11.52□□□□□ -0.57
CUX1-219ENST00000606749 PIK3R4Q99570 1358 aa11.52□□□□□ -0.57
CUX1-219ENST00000606749 NCOA3Q9Y6Q9 1424 aa11.52□□□□□ -0.57
CUX1-219ENST00000606749 TRIM52Q96A61 297 aa11.51□□□□□ -0.57
CUX1-219ENST00000606749 C19orf44Q9H6X5 657 aa11.51□□□□□ -0.57
CUX1-219ENST00000606749 C14orf37Q86TY3 774 aa11.5□□□□□ -0.57
CUX1-219ENST00000606749 RGS17Q9UGC6 210 aaPredicted RBP11.5□□□□□ -0.57
CUX1-219ENST00000606749 PTPRUQ92729 1446 aa11.49□□□□□ -0.57
CUX1-219ENST00000606749 DIP2AQ14689 1571 aa11.49□□□□□ -0.57
CUX1-219ENST00000606749 ROBO1Q9Y6N7 1651 aa11.49□□□□□ -0.57
CUX1-219ENST00000606749 ATF3P18847 181 aa11.48□□□□□ -0.57
CUX1-219ENST00000606749 CADPS2Q86UW7 1296 aa11.48□□□□□ -0.57
CUX1-219ENST00000606749 HFM1A2PYH4 1435 aa11.48□□□□□ -0.57
CUX1-219ENST00000606749 SPHKAPQ2M3C7 1700 aa11.48□□□□□ -0.57
CUX1-219ENST00000606749 METP08581 1390 aa11.47□□□□□ -0.57
CUX1-219ENST00000606749 SLC4A1APQ9BWU0 796 aaKnown RBP11.47□□□□□ -0.57
CUX1-219ENST00000606749 TRPM2O94759 1503 aa11.46□□□□□ -0.57
CUX1-219ENST00000606749 VGFO15240 615 aaPredicted RBP11.45□□□□□ -0.58
CUX1-219ENST00000606749 CLTCL1P53675 1640 aa11.45□□□□□ -0.58
CUX1-219ENST00000606749 SETBP1Q9Y6X0 1596 aa11.45□□□□□ -0.58
CUX1-219ENST00000606749 NRXN3Q9Y4C0 1643 aa11.44□□□□□ -0.58
CUX1-219ENST00000606749 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.43□□□□□ -0.58
CUX1-219ENST00000606749 JCADQ9P266 1359 aa11.43□□□□□ -0.58
CUX1-219ENST00000606749 FOXD1Q16676 465 aa11.43□□□□□ -0.58
CUX1-219ENST00000606749 RPGRIP1LQ68CZ1 1315 aa11.42□□□□□ -0.58
CUX1-219ENST00000606749 NEXMIFQ5QGS0 1516 aa11.42□□□□□ -0.58
CUX1-219ENST00000606749 POTEAQ6S8J7 498 aa11.42□□□□□ -0.58
CUX1-219ENST00000606749 BRINP3Q76B58 766 aa11.42□□□□□ -0.58
CUX1-219ENST00000606749 PHLPP1O60346 1717 aa11.42□□□□□ -0.58
CUX1-219ENST00000606749 KIF1BO60333 1816 aa11.41□□□□□ -0.58
CUX1-219ENST00000606749 MPHOSPH9Q99550 1183 aa11.4□□□□□ -0.58
CUX1-219ENST00000606749 DCCP43146 1447 aa11.4□□□□□ -0.58
CUX1-219ENST00000606749 XRN1Q8IZH2 1706 aaKnown RBP11.4□□□□□ -0.58
CUX1-219ENST00000606749 COL16A1Q07092 1604 aaPredicted RBP11.38□□□□□ -0.59
CUX1-219ENST00000606749 SPATA31A6Q5VVP1 1343 aa11.38□□□□□ -0.59
CUX1-219ENST00000606749 MST1RQ04912 1400 aa11.37□□□□□ -0.59
CUX1-219ENST00000606749 RGL3Q3MIN7 710 aa11.37□□□□□ -0.59
CUX1-219ENST00000606749 AHDC1Q5TGY3 1603 aaPredicted RBP11.37□□□□□ -0.59
CUX1-219ENST00000606749 ADGRL3Q9HAR2 1447 aa11.36□□□□□ -0.59
CUX1-219ENST00000606749 ROBO2Q9HCK4 1378 aa11.36□□□□□ -0.59
CUX1-219ENST00000606749 ADGRF5Q8IZF2 1346 aa11.35□□□□□ -0.59
CUX1-219ENST00000606749 MEX3CQ5U5Q3 659 aaKnown RBP11.35□□□□□ -0.59
CUX1-219ENST00000606749 DDX17Q92841 729 aaKnown RBP11.35□□□□□ -0.59
CUX1-219ENST00000606749 LRRC59Q96AG4 307 aaKnown RBP11.35□□□□□ -0.59
CUX1-219ENST00000606749 CCDC144AA2RUR9 1427 aa11.35□□□□□ -0.59
CUX1-219ENST00000606749 ACIN1Q9UKV3 1341 aaKnown RBP11.35□□□□□ -0.59
CUX1-219ENST00000606749 NUTM2BA6NNL0 878 aaPredicted RBP11.34□□□□□ -0.59
CUX1-219ENST00000606749 NUTM2EB1AL46 878 aaPredicted RBP11.34□□□□□ -0.59
CUX1-219ENST00000606749 NUTM2AQ8IVF1 878 aaPredicted RBP11.34□□□□□ -0.59
CUX1-219ENST00000606749 LRP6O75581 1613 aa11.34□□□□□ -0.59
CUX1-219ENST00000606749 ASXL1Q8IXJ9 1541 aa11.34□□□□□ -0.59
CUX1-219ENST00000606749 PTCH1Q13635 1447 aa11.34□□□□□ -0.59
CUX1-219ENST00000606749 SETD5Q9C0A6 1442 aa11.34□□□□□ -0.59
CUX1-219ENST00000606749 SPATA31E1Q6ZUB1 1445 aa11.33□□□□□ -0.6
CUX1-219ENST00000606749 C1orf167Q5SNV9 1468 aa11.32□□□□□ -0.6
CUX1-219ENST00000606749 SETD1AO15047 1707 aaKnown RBP11.32□□□□□ -0.6
CUX1-219ENST00000606749 ANKRD30BQ9BXX2 1392 aa11.32□□□□□ -0.6
CUX1-219ENST00000606749 PPLO60437 1756 aa11.32□□□□□ -0.6
CUX1-219ENST00000606749 ZNF772Q68DY9 489 aaPredicted RBP11.32□□□□□ -0.6
CUX1-219ENST00000606749 ORAI2Q96SN7 254 aa11.32□□□□□ -0.6
CUX1-219ENST00000606749 PRAG1Q86YV5 1406 aa11.32□□□□□ -0.6
CUX1-219ENST00000606749 SHPRHQ149N8 1683 aa11.31□□□□□ -0.6
CUX1-219ENST00000606749 STK26Q9P289 416 aa11.31□□□□□ -0.6
CUX1-219ENST00000606749 NALCNQ8IZF0 1738 aa11.31□□□□□ -0.6
CUX1-219ENST00000606749 TMEM132EQ6IEE7 984 aa11.3□□□□□ -0.6
CUX1-219ENST00000606749 WAPLQ7Z5K2 1190 aa11.3□□□□□ -0.6
CUX1-219ENST00000606749 NHSL1Q5SYE7 1610 aa11.29□□□□□ -0.6
CUX1-219ENST00000606749 SOS2Q07890 1332 aaPredicted RBP11.29□□□□□ -0.6
CUX1-219ENST00000606749 PNPLA6Q8IY17 1366 aa11.28□□□□□ -0.6
CUX1-219ENST00000606749 C14orf93Q9H972 538 aaKnown RBP11.28□□□□□ -0.6
CUX1-219ENST00000606749 LRPPRCP42704 1394 aaKnown RBP11.28□□□□□ -0.6
CUX1-219ENST00000606749 ABCC11Q96J66 1382 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms