RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 MYO5BQ9ULV0 1848 aa24.37■■□□□ 1.49
LSM4-206ENST00000600289 SLC52A1Q9NWF4 448 aa24.35■■□□□ 1.49
LSM4-206ENST00000600289 TMEM131LA2VDJ0 1609 aa24.34■■□□□ 1.49
LSM4-206ENST00000600289 ROBO1Q9Y6N7 1651 aa24.32■■□□□ 1.48
LSM4-206ENST00000600289 IDI1Q13907 227 aa24.31■■□□□ 1.48
LSM4-206ENST00000600289 FAM135BQ49AJ0 1406 aa24.3■■□□□ 1.48
LSM4-206ENST00000600289 SCAF11Q99590 1463 aaKnown RBP24.29■■□□□ 1.48
LSM4-206ENST00000600289 TRPM2O94759 1503 aa24.29■■□□□ 1.48
LSM4-206ENST00000600289 ACIN1Q9UKV3 1341 aaKnown RBP24.28■■□□□ 1.48
LSM4-206ENST00000600289 TMEM2Q9UHN6 1383 aa24.27■■□□□ 1.48
LSM4-206ENST00000600289 SETD5Q9C0A6 1442 aa24.26■■□□□ 1.47
LSM4-206ENST00000600289 CLTCL1P53675 1640 aa24.24■■□□□ 1.47
LSM4-206ENST00000600289 KIF1BO60333 1816 aa24.23■■□□□ 1.47
LSM4-206ENST00000600289 SRCAPQ6ZRS2 3230 aa24.22■■□□□ 1.47
LSM4-206ENST00000600289 STAG3Q9UJ98 1225 aa24.21■■□□□ 1.47
LSM4-206ENST00000600289 ZFYVE9O95405 1425 aa24.2■■□□□ 1.46
LSM4-206ENST00000600289 UPF1Q92900 1129 aaKnown RBP eCLIP24.2■■□□□ 1.468e-33■■■□□ 18.1
LSM4-206ENST00000600289 TRIM52Q96A61 297 aa24.2■■□□□ 1.46
LSM4-206ENST00000600289 PHLPP1O60346 1717 aa24.18■■□□□ 1.46
LSM4-206ENST00000600289 LTKP29376 864 aa24.17■■□□□ 1.46
LSM4-206ENST00000600289 EID1Q9Y6B2 187 aa24.17■■□□□ 1.46
LSM4-206ENST00000600289 SLC4A1APQ9BWU0 796 aaKnown RBP24.16■■□□□ 1.46
LSM4-206ENST00000600289 RAB3GAP2Q9H2M9 1393 aa24.16■■□□□ 1.46
LSM4-206ENST00000600289 TXNDC2Q86VQ3 553 aa24.15■■□□□ 1.46
LSM4-206ENST00000600289 RIMS2Q9UQ26 1411 aa24.13■■□□□ 1.45
LSM4-206ENST00000600289 COL16A1Q07092 1604 aaPredicted RBP24.1■■□□□ 1.45
LSM4-206ENST00000600289 TMEM94Q12767 1356 aa24.09■■□□□ 1.45
LSM4-206ENST00000600289 HRCP23327 699 aa24.09■■□□□ 1.45
LSM4-206ENST00000600289 LRP6O75581 1613 aa24.09■■□□□ 1.45
LSM4-206ENST00000600289 PLEKHG1Q9ULL1 1385 aa24.08■■□□□ 1.45
LSM4-206ENST00000600289 MPHOSPH9Q99550 1183 aa24.08■■□□□ 1.45
LSM4-206ENST00000600289 DIP2AQ14689 1571 aa24.08■■□□□ 1.44
LSM4-206ENST00000600289 NEXMIFQ5QGS0 1516 aa24.07■■□□□ 1.44
LSM4-206ENST00000600289 HDGFP51858 240 aaKnown RBP24.07■■□□□ 1.44
LSM4-206ENST00000600289 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.06■■□□□ 1.44
LSM4-206ENST00000600289 NWD1Q149M9 1564 aa24.05■■□□□ 1.44
LSM4-206ENST00000600289 JCADQ9P266 1359 aa24.04■■□□□ 1.44
LSM4-206ENST00000600289 PPLO60437 1756 aa24.04■■□□□ 1.44
LSM4-206ENST00000600289 CHGAP10645 457 aaKnown RBP24.04■■□□□ 1.44
LSM4-206ENST00000600289 CHD2O14647 1828 aaKnown RBP24.03■■□□□ 1.44
LSM4-206ENST00000600289 SETBP1Q9Y6X0 1596 aa24.03■■□□□ 1.44
LSM4-206ENST00000600289 NRXN3Q9Y4C0 1643 aa24.02■■□□□ 1.44
LSM4-206ENST00000600289 IFT172Q9UG01 1749 aa24.02■■□□□ 1.44
LSM4-206ENST00000600289 CCDC144AA2RUR9 1427 aa24■■□□□ 1.43
LSM4-206ENST00000600289 SHPRHQ149N8 1683 aa23.99■■□□□ 1.43
LSM4-206ENST00000600289 PPP1R15AO75807 674 aaPredicted RBP23.97■■□□□ 1.43
LSM4-206ENST00000600289 FOXD1Q16676 465 aa23.97■■□□□ 1.43
LSM4-206ENST00000600289 ADAMTS13Q76LX8 1427 aa23.97■■□□□ 1.43
LSM4-206ENST00000600289 NKTRP30414 1462 aaKnown RBP23.96■■□□□ 1.43
LSM4-206ENST00000600289 RBM33Q96EV2 1170 aaKnown RBP23.96■■□□□ 1.43
LSM4-206ENST00000600289 CDK12Q9NYV4 1490 aaPredicted RBP23.95■■□□□ 1.42
LSM4-206ENST00000600289 SPATA31E1Q6ZUB1 1445 aa23.95■■□□□ 1.42
LSM4-206ENST00000600289 PIK3R4Q99570 1358 aa23.93■■□□□ 1.42
LSM4-206ENST00000600289 ZNF772Q68DY9 489 aaPredicted RBP23.93■■□□□ 1.42
LSM4-206ENST00000600289 RPGRIP1LQ68CZ1 1315 aa23.92■■□□□ 1.42
LSM4-206ENST00000600289 KCNA6P17658 529 aa23.92■■□□□ 1.42
LSM4-206ENST00000600289 ZNF326Q5BKZ1 582 aaKnown RBP23.92■■□□□ 1.42
LSM4-206ENST00000600289 SLC26A8Q96RN1 970 aa23.92■■□□□ 1.42
LSM4-206ENST00000600289 TBX22Q9Y458 520 aa23.92■■□□□ 1.42
LSM4-206ENST00000600289 SPATA31A6Q5VVP1 1343 aa23.9■■□□□ 1.42
LSM4-206ENST00000600289 XRN1Q8IZH2 1706 aaKnown RBP23.9■■□□□ 1.42
LSM4-206ENST00000600289 PROSER2Q86WR7 435 aaPredicted RBP23.89■■□□□ 1.41
LSM4-206ENST00000600289 AHDC1Q5TGY3 1603 aaPredicted RBP23.88■■□□□ 1.41
LSM4-206ENST00000600289 MSH6P52701 1360 aa23.88■■□□□ 1.41
LSM4-206ENST00000600289 ANKRD30BQ9BXX2 1392 aa23.88■■□□□ 1.41
LSM4-206ENST00000600289 NUTM2DQ5VT03 806 aaPredicted RBP23.87■■□□□ 1.41
LSM4-206ENST00000600289 BCANQ96GW7 911 aa23.87■■□□□ 1.41
LSM4-206ENST00000600289 SLAIN2Q9P270 581 aa23.87■■□□□ 1.41
LSM4-206ENST00000600289 VGFO15240 615 aaPredicted RBP23.84■■□□□ 1.41
LSM4-206ENST00000600289 RXRBP28702 533 aa23.84■■□□□ 1.41
LSM4-206ENST00000600289 MEX3CQ5U5Q3 659 aaKnown RBP23.84■■□□□ 1.41
LSM4-206ENST00000600289 RGS12O14924 1447 aa23.81■■□□□ 1.4
LSM4-206ENST00000600289 MYOM2P54296 1465 aa23.8■■□□□ 1.4
LSM4-206ENST00000600289 PTPRUQ92729 1446 aa23.79■■□□□ 1.4
LSM4-206ENST00000600289 NCOA3Q9Y6Q9 1424 aa23.79■■□□□ 1.4
LSM4-206ENST00000600289 LAMC1P11047 1609 aa23.78■■□□□ 1.4
LSM4-206ENST00000600289 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.78■■□□□ 1.4
LSM4-206ENST00000600289 PRAG1Q86YV5 1406 aa23.77■■□□□ 1.4
LSM4-206ENST00000600289 NRXN1Q9ULB1 1477 aa23.77■■□□□ 1.4
LSM4-206ENST00000600289 TRIM26Q12899 539 aaPredicted RBP23.77■■□□□ 1.4
LSM4-206ENST00000600289 METP08581 1390 aa23.75■■□□□ 1.39
LSM4-206ENST00000600289 PIK3C2GO75747 1445 aa23.75■■□□□ 1.39
LSM4-206ENST00000600289 KNDC1Q76NI1 1749 aa23.73■■□□□ 1.39
LSM4-206ENST00000600289 RGL3Q3MIN7 710 aa23.73■■□□□ 1.39
LSM4-206ENST00000600289 AFF2P51816 1311 aa23.71■■□□□ 1.39
LSM4-206ENST00000600289 PTCH1Q13635 1447 aa23.7■■□□□ 1.38
LSM4-206ENST00000600289 ADGRF5Q8IZF2 1346 aa23.7■■□□□ 1.38
LSM4-206ENST00000600289 AMOTL2Q9Y2J4 779 aa23.7■■□□□ 1.38
LSM4-206ENST00000600289 EP400Q96L91 3159 aa23.7■■□□□ 1.38
LSM4-206ENST00000600289 ASXL1Q8IXJ9 1541 aa23.69■■□□□ 1.38
LSM4-206ENST00000600289 NALCNQ8IZF0 1738 aa23.68■■□□□ 1.38
LSM4-206ENST00000600289 NHSL1Q5SYE7 1610 aa23.66■■□□□ 1.38
LSM4-206ENST00000600289 NUTM2BA6NNL0 878 aaPredicted RBP23.64■■□□□ 1.37
LSM4-206ENST00000600289 NUTM2EB1AL46 878 aaPredicted RBP23.64■■□□□ 1.37
LSM4-206ENST00000600289 NUTM2AQ8IVF1 878 aaPredicted RBP23.64■■□□□ 1.37
LSM4-206ENST00000600289 STAC3Q96MF2 364 aa23.64■■□□□ 1.37
LSM4-206ENST00000600289 TECPR2O15040 1411 aa23.64■■□□□ 1.37
LSM4-206ENST00000600289 DCCP43146 1447 aa23.64■■□□□ 1.37
LSM4-206ENST00000600289 RBM6P78332 1123 aaKnown RBP23.61■■□□□ 1.37
LSM4-206ENST00000600289 DHX57Q6P158 1386 aaKnown RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms