RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TRIM26Q12899 539 aaPredicted RBP28.96■■■□□ 2.23
SHKBP1-221ENST00000599833 ZNF335Q9H4Z2 1342 aaPredicted RBP28.95■■■□□ 2.23
SHKBP1-221ENST00000599833 CHGAP10645 457 aaKnown RBP28.94■■■□□ 2.22
SHKBP1-221ENST00000599833 EID1Q9Y6B2 187 aa28.93■■■□□ 2.22
SHKBP1-221ENST00000599833 SPATA31E1Q6ZUB1 1445 aa28.93■■■□□ 2.22
SHKBP1-221ENST00000599833 ANKRD30BQ9BXX2 1392 aa28.92■■■□□ 2.22
SHKBP1-221ENST00000599833 PLEKHG1Q9ULL1 1385 aa28.91■■■□□ 2.22
SHKBP1-221ENST00000599833 CCDC144AA2RUR9 1427 aa28.9■■■□□ 2.22
SHKBP1-221ENST00000599833 NRXN3Q9Y4C0 1643 aa28.9■■■□□ 2.22
SHKBP1-221ENST00000599833 PPLO60437 1756 aa28.88■■■□□ 2.21
SHKBP1-221ENST00000599833 ADAMTS13Q76LX8 1427 aa28.86■■■□□ 2.21
SHKBP1-221ENST00000599833 IFT172Q9UG01 1749 aa28.86■■■□□ 2.21
SHKBP1-221ENST00000599833 NUTM2DQ5VT03 806 aaPredicted RBP28.85■■■□□ 2.21
SHKBP1-221ENST00000599833 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.84■■■□□ 2.21
SHKBP1-221ENST00000599833 SETBP1Q9Y6X0 1596 aa28.84■■■□□ 2.21
SHKBP1-221ENST00000599833 CERKQ8TCT0 537 aa28.82■■■□□ 2.2
SHKBP1-221ENST00000599833 CPS1P31327 1500 aa28.8■■■□□ 2.2
SHKBP1-221ENST00000599833 DIP2AQ14689 1571 aa28.79■■■□□ 2.2
SHKBP1-221ENST00000599833 NWD1Q149M9 1564 aa28.79■■■□□ 2.2
SHKBP1-221ENST00000599833 SLC26A8Q96RN1 970 aa28.79■■■□□ 2.2
SHKBP1-221ENST00000599833 HDGFP51858 240 aaKnown RBP28.78■■■□□ 2.2
SHKBP1-221ENST00000599833 ZNF326Q5BKZ1 582 aaKnown RBP28.78■■■□□ 2.2
SHKBP1-221ENST00000599833 CHD2O14647 1828 aaKnown RBP28.78■■■□□ 2.2
SHKBP1-221ENST00000599833 SETD1AO15047 1707 aaKnown RBP28.77■■■□□ 2.2
SHKBP1-221ENST00000599833 IQSEC2Q5JU85 1478 aa28.77■■■□□ 2.2
SHKBP1-221ENST00000599833 RPGRIP1LQ68CZ1 1315 aa28.76■■■□□ 2.19
SHKBP1-221ENST00000599833 PPP1R15AO75807 674 aaPredicted RBP28.76■■■□□ 2.19
SHKBP1-221ENST00000599833 XIRP1Q702N8 1843 aaKnown RBP28.74■■■□□ 2.19
SHKBP1-221ENST00000599833 SENP3Q9H4L4 574 aaPredicted RBP28.74■■■□□ 2.19
SHKBP1-221ENST00000599833 TBX22Q9Y458 520 aa28.73■■■□□ 2.19
SHKBP1-221ENST00000599833 LRRC7Q96NW7 1537 aa28.73■■■□□ 2.19
SHKBP1-221ENST00000599833 DHX57Q6P158 1386 aaKnown RBP28.72■■■□□ 2.19
SHKBP1-221ENST00000599833 PTPRUQ92729 1446 aa28.69■■■□□ 2.18
SHKBP1-221ENST00000599833 NRXN1Q9ULB1 1477 aa28.67■■■□□ 2.18
SHKBP1-221ENST00000599833 KCNA6P17658 529 aa28.67■■■□□ 2.18
SHKBP1-221ENST00000599833 RGL3Q3MIN7 710 aa28.67■■■□□ 2.18
SHKBP1-221ENST00000599833 XRN1Q8IZH2 1706 aaKnown RBP28.66■■■□□ 2.18
SHKBP1-221ENST00000599833 ADGRF5Q8IZF2 1346 aa28.66■■■□□ 2.18
SHKBP1-221ENST00000599833 ALKQ9UM73 1620 aa28.65■■■□□ 2.18
SHKBP1-221ENST00000599833 PIK3R4Q99570 1358 aa28.65■■■□□ 2.18
SHKBP1-221ENST00000599833 VGFO15240 615 aaPredicted RBP28.65■■■□□ 2.18
SHKBP1-221ENST00000599833 NKTRP30414 1462 aaKnown RBP28.65■■■□□ 2.18
SHKBP1-221ENST00000599833 METP08581 1390 aa28.64■■■□□ 2.18
SHKBP1-221ENST00000599833 MYOM2P54296 1465 aa28.64■■■□□ 2.17
SHKBP1-221ENST00000599833 BCANQ96GW7 911 aa28.63■■■□□ 2.17
SHKBP1-221ENST00000599833 PIK3C2GO75747 1445 aa28.62■■■□□ 2.17
SHKBP1-221ENST00000599833 FBXO41Q8TF61 875 aa28.59■■■□□ 2.17
SHKBP1-221ENST00000599833 ASXL1Q8IXJ9 1541 aa28.59■■■□□ 2.17
SHKBP1-221ENST00000599833 ILDR1Q86SU0 546 aaPredicted RBP28.55■■■□□ 2.16
SHKBP1-221ENST00000599833 PRAG1Q86YV5 1406 aa28.54■■■□□ 2.16
SHKBP1-221ENST00000599833 TMEM94Q12767 1356 aa28.54■■■□□ 2.16
SHKBP1-221ENST00000599833 PCGF6Q9BYE7 350 aa28.52■■■□□ 2.16
SHKBP1-221ENST00000599833 AMOTL2Q9Y2J4 779 aa28.51■■■□□ 2.15
SHKBP1-221ENST00000599833 RBM33Q96EV2 1170 aaKnown RBP28.49■■■□□ 2.15
SHKBP1-221ENST00000599833 SIN3AQ96ST3 1273 aa28.49■■■□□ 2.15
SHKBP1-221ENST00000599833 LAMC1P11047 1609 aa28.48■■■□□ 2.15
SHKBP1-221ENST00000599833 PROSER2Q86WR7 435 aaPredicted RBP28.45■■■□□ 2.14
SHKBP1-221ENST00000599833 PTCH1Q13635 1447 aa28.44■■■□□ 2.14
SHKBP1-221ENST00000599833 NCOA3Q9Y6Q9 1424 aa28.44■■■□□ 2.14
SHKBP1-221ENST00000599833 KNDC1Q76NI1 1749 aa28.44■■■□□ 2.14
SHKBP1-221ENST00000599833 DCAF11Q8TEB1 546 aa28.44■■■□□ 2.14
SHKBP1-221ENST00000599833 C14orf93Q9H972 538 aaKnown RBP28.44■■■□□ 2.14
SHKBP1-221ENST00000599833 ADGRB1O14514 1584 aa28.44■■■□□ 2.14
SHKBP1-221ENST00000599833 TECPR2O15040 1411 aa28.42■■■□□ 2.14
SHKBP1-221ENST00000599833 ROBO2Q9HCK4 1378 aa28.41■■■□□ 2.14
SHKBP1-221ENST00000599833 CFAP70Q5T0N1 1121 aa28.41■■■□□ 2.14
SHKBP1-221ENST00000599833 STAC3Q96MF2 364 aa28.4■■■□□ 2.14
SHKBP1-221ENST00000599833 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.4■■■□□ 2.14
SHKBP1-221ENST00000599833 UBAP1LF5GYI3 381 aa28.39■■■□□ 2.14
SHKBP1-221ENST00000599833 NALCNQ8IZF0 1738 aa28.39■■■□□ 2.14
SHKBP1-221ENST00000599833 LRPPRCP42704 1394 aaKnown RBP28.38■■■□□ 2.13
SHKBP1-221ENST00000599833 KDM2AQ9Y2K7 1162 aa28.37■■■□□ 2.13
SHKBP1-221ENST00000599833 TMEM132EQ6IEE7 984 aa28.36■■■□□ 2.13
SHKBP1-221ENST00000599833 YTHDC2Q9H6S0 1430 aaKnown RBP28.35■■■□□ 2.13
SHKBP1-221ENST00000599833 KIAA1210Q9ULL0 1709 aa28.35■■■□□ 2.13
SHKBP1-221ENST00000599833 L3MBTL2Q969R5 705 aa28.35■■■□□ 2.13
SHKBP1-221ENST00000599833 ABCC11Q96J66 1382 aa28.35■■■□□ 2.13
SHKBP1-221ENST00000599833 TOM1O60784 492 aa28.32■■■□□ 2.12
SHKBP1-221ENST00000599833 NEUROD1Q13562 356 aa28.31■■■□□ 2.12
SHKBP1-221ENST00000599833 ADGRL3Q9HAR2 1447 aa28.31■■■□□ 2.12
SHKBP1-221ENST00000599833 MSH6P52701 1360 aa28.3■■■□□ 2.12
SHKBP1-221ENST00000599833 DCCP43146 1447 aa28.29■■■□□ 2.12
SHKBP1-221ENST00000599833 DLC1Q96QB1 1528 aa28.28■■■□□ 2.12
SHKBP1-221ENST00000599833 PLEKHH1Q9ULM0 1364 aa28.27■■■□□ 2.12
SHKBP1-221ENST00000599833 C19orf44Q9H6X5 657 aa28.27■■■□□ 2.12
SHKBP1-221ENST00000599833 FAM135BQ49AJ0 1406 aa28.26■■■□□ 2.11
SHKBP1-221ENST00000599833 STK26Q9P289 416 aa28.25■■■□□ 2.11
SHKBP1-221ENST00000599833 TRPM1Q7Z4N2 1603 aa28.24■■■□□ 2.11
SHKBP1-221ENST00000599833 PIP4K2BP78356 416 aa28.23■■■□□ 2.11
SHKBP1-221ENST00000599833 SIRT1Q96EB6 747 aa28.23■■■□□ 2.11
SHKBP1-221ENST00000599833 ROBO1Q9Y6N7 1651 aa28.23■■■□□ 2.11
SHKBP1-221ENST00000599833 WAPLQ7Z5K2 1190 aa28.22■■■□□ 2.11
SHKBP1-221ENST00000599833 ARHGEF28Q8N1W1 1705 aaKnown RBP28.22■■■□□ 2.11
SHKBP1-221ENST00000599833 MST1RQ04912 1400 aa28.21■■■□□ 2.11
SHKBP1-221ENST00000599833 CDC42BPGQ6DT37 1551 aa28.2■■■□□ 2.1
SHKBP1-221ENST00000599833 NBPF1Q3BBV0 1214 aa28.19■■■□□ 2.1
SHKBP1-221ENST00000599833 SLAIN2Q9P270 581 aa28.18■■■□□ 2.1
SHKBP1-221ENST00000599833 C14orf37Q86TY3 774 aa28.17■■■□□ 2.1
SHKBP1-221ENST00000599833 CADPS2Q86UW7 1296 aa28.17■■■□□ 2.1
SHKBP1-221ENST00000599833 CLSPNQ9HAW4 1339 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms