RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ZNF326Q5BKZ1 582 aaKnown RBP24.14■■□□□ 1.45
SHKBP1-219ENST00000599575 RIMS2Q9UQ26 1411 aa24.14■■□□□ 1.45
SHKBP1-219ENST00000599575 NCKAP5LQ9HCH0 1330 aa24.12■■□□□ 1.45
SHKBP1-219ENST00000599575 LTKP29376 864 aa24.12■■□□□ 1.45
SHKBP1-219ENST00000599575 STAC3Q96MF2 364 aa24.12■■□□□ 1.45
SHKBP1-219ENST00000599575 STRCQ7RTU9 1775 aa24.11■■□□□ 1.45
SHKBP1-219ENST00000599575 CLSPNQ9HAW4 1339 aa24.1■■□□□ 1.45
SHKBP1-219ENST00000599575 VGFO15240 615 aaPredicted RBP24.1■■□□□ 1.45
SHKBP1-219ENST00000599575 NPHP4O75161 1426 aaPredicted RBP24.1■■□□□ 1.45
SHKBP1-219ENST00000599575 PPP1R15AO75807 674 aaPredicted RBP24.09■■□□□ 1.45
SHKBP1-219ENST00000599575 POLR1AO95602 1720 aaPredicted RBP24.09■■□□□ 1.45
SHKBP1-219ENST00000599575 PLEKHG1Q9ULL1 1385 aa24.08■■□□□ 1.45
SHKBP1-219ENST00000599575 NEXMIFQ5QGS0 1516 aa24.05■■□□□ 1.44
SHKBP1-219ENST00000599575 RGL3Q3MIN7 710 aa24.04■■□□□ 1.44
SHKBP1-219ENST00000599575 MYO5BQ9ULV0 1848 aa24.03■■□□□ 1.44
SHKBP1-219ENST00000599575 IQGAP1P46940 1657 aa24.01■■□□□ 1.43
SHKBP1-219ENST00000599575 TBX22Q9Y458 520 aa23.98■■□□□ 1.43
SHKBP1-219ENST00000599575 MYOM2P54296 1465 aa23.98■■□□□ 1.43
SHKBP1-219ENST00000599575 BCANQ96GW7 911 aa23.97■■□□□ 1.43
SHKBP1-219ENST00000599575 SETBP1Q9Y6X0 1596 aa23.96■■□□□ 1.43
SHKBP1-219ENST00000599575 DIP2AQ14689 1571 aa23.95■■□□□ 1.43
SHKBP1-219ENST00000599575 PPLO60437 1756 aa23.95■■□□□ 1.42
SHKBP1-219ENST00000599575 PIK3R4Q99570 1358 aa23.94■■□□□ 1.42
SHKBP1-219ENST00000599575 NUTM2DQ5VT03 806 aaPredicted RBP23.94■■□□□ 1.42
SHKBP1-219ENST00000599575 SIN3AQ96ST3 1273 aa23.94■■□□□ 1.42
SHKBP1-219ENST00000599575 CCER1Q8TC90 406 aaPredicted RBP23.93■■□□□ 1.42
SHKBP1-219ENST00000599575 DCAF11Q8TEB1 546 aa23.92■■□□□ 1.42
SHKBP1-219ENST00000599575 TIMELESSQ9UNS1 1208 aa23.92■■□□□ 1.42
SHKBP1-219ENST00000599575 IFT172Q9UG01 1749 aa23.92■■□□□ 1.42
SHKBP1-219ENST00000599575 NRXN1Q9ULB1 1477 aa23.92■■□□□ 1.42
SHKBP1-219ENST00000599575 ADAMTS13Q76LX8 1427 aa23.92■■□□□ 1.42
SHKBP1-219ENST00000599575 NEUROD1Q13562 356 aa23.91■■□□□ 1.42
SHKBP1-219ENST00000599575 SLC26A8Q96RN1 970 aa23.9■■□□□ 1.42
SHKBP1-219ENST00000599575 PIK3C2GO75747 1445 aa23.9■■□□□ 1.42
SHKBP1-219ENST00000599575 ADGRF5Q8IZF2 1346 aa23.89■■□□□ 1.42
SHKBP1-219ENST00000599575 TONSLQ96HA7 1378 aa23.87■■□□□ 1.41
SHKBP1-219ENST00000599575 KCNA6P17658 529 aa23.86■■□□□ 1.41
SHKBP1-219ENST00000599575 L3MBTL2Q969R5 705 aa23.86■■□□□ 1.41
SHKBP1-219ENST00000599575 NRXN3Q9Y4C0 1643 aa23.84■■□□□ 1.41
SHKBP1-219ENST00000599575 C14orf93Q9H972 538 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-219ENST00000599575 CPS1P31327 1500 aa23.84■■□□□ 1.41
SHKBP1-219ENST00000599575 KDM2AQ9Y2K7 1162 aa23.83■■□□□ 1.41
SHKBP1-219ENST00000599575 ZNF335Q9H4Z2 1342 aaPredicted RBP23.83■■□□□ 1.4
SHKBP1-219ENST00000599575 ALKQ9UM73 1620 aa23.82■■□□□ 1.4
SHKBP1-219ENST00000599575 LAMC1P11047 1609 aa23.81■■□□□ 1.4
SHKBP1-219ENST00000599575 LTBP4Q8N2S1 1624 aa23.79■■□□□ 1.4
SHKBP1-219ENST00000599575 NKTRP30414 1462 aaKnown RBP23.79■■□□□ 1.4
SHKBP1-219ENST00000599575 METP08581 1390 aa23.78■■□□□ 1.4
SHKBP1-219ENST00000599575 NWD1Q149M9 1564 aa23.78■■□□□ 1.4
SHKBP1-219ENST00000599575 PRAG1Q86YV5 1406 aa23.78■■□□□ 1.4
SHKBP1-219ENST00000599575 SENP3Q9H4L4 574 aaPredicted RBP23.75■■□□□ 1.39
SHKBP1-219ENST00000599575 AMOTL2Q9Y2J4 779 aa23.75■■□□□ 1.39
SHKBP1-219ENST00000599575 IQSEC2Q5JU85 1478 aa23.75■■□□□ 1.39
SHKBP1-219ENST00000599575 CFAP70Q5T0N1 1121 aa23.74■■□□□ 1.39
SHKBP1-219ENST00000599575 NCOA3Q9Y6Q9 1424 aa23.74■■□□□ 1.39
SHKBP1-219ENST00000599575 SETD1AO15047 1707 aaKnown RBP23.73■■□□□ 1.39
SHKBP1-219ENST00000599575 CHD2O14647 1828 aaKnown RBP23.73■■□□□ 1.39
SHKBP1-219ENST00000599575 LRPPRCP42704 1394 aaKnown RBP23.72■■□□□ 1.39
SHKBP1-219ENST00000599575 ABCC11Q96J66 1382 aa23.72■■□□□ 1.39
SHKBP1-219ENST00000599575 PTPRUQ92729 1446 aa23.71■■□□□ 1.39
SHKBP1-219ENST00000599575 SIRT1Q96EB6 747 aa23.71■■□□□ 1.39
SHKBP1-219ENST00000599575 KIAA1210Q9ULL0 1709 aa23.7■■□□□ 1.39
SHKBP1-219ENST00000599575 TECPR2O15040 1411 aa23.7■■□□□ 1.38
SHKBP1-219ENST00000599575 PTCH1Q13635 1447 aa23.7■■□□□ 1.38
SHKBP1-219ENST00000599575 CERKQ8TCT0 537 aa23.7■■□□□ 1.38
SHKBP1-219ENST00000599575 PROSER2Q86WR7 435 aaPredicted RBP23.69■■□□□ 1.38
SHKBP1-219ENST00000599575 LRRC7Q96NW7 1537 aa23.69■■□□□ 1.38
SHKBP1-219ENST00000599575 YTHDC2Q9H6S0 1430 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-219ENST00000599575 XRN1Q8IZH2 1706 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-219ENST00000599575 ADGRB1O14514 1584 aa23.67■■□□□ 1.38
SHKBP1-219ENST00000599575 TMEM132EQ6IEE7 984 aa23.66■■□□□ 1.38
SHKBP1-219ENST00000599575 ASXL1Q8IXJ9 1541 aa23.65■■□□□ 1.38
SHKBP1-219ENST00000599575 STRCP1A6NGW2 1772 aa23.65■■□□□ 1.38
SHKBP1-219ENST00000599575 TMEM94Q12767 1356 aa23.65■■□□□ 1.38
SHKBP1-219ENST00000599575 FAM135BQ49AJ0 1406 aa23.64■■□□□ 1.37
SHKBP1-219ENST00000599575 DLC1Q96QB1 1528 aa23.62■■□□□ 1.37
SHKBP1-219ENST00000599575 GPRASP1Q5JY77 1395 aa23.61■■□□□ 1.37
SHKBP1-219ENST00000599575 NBPF8Q3BBV2 869 aa23.6■■□□□ 1.37
SHKBP1-219ENST00000599575 STK26Q9P289 416 aa23.6■■□□□ 1.37
SHKBP1-219ENST00000599575 ROBO2Q9HCK4 1378 aa23.6■■□□□ 1.37
SHKBP1-219ENST00000599575 KNDC1Q76NI1 1749 aa23.59■■□□□ 1.37
SHKBP1-219ENST00000599575 ROCK2O75116 1388 aaKnown RBP23.59■■□□□ 1.37
SHKBP1-219ENST00000599575 RALGAPBQ86X10 1494 aa23.58■■□□□ 1.37
SHKBP1-219ENST00000599575 NBPF1Q3BBV0 1214 aa23.58■■□□□ 1.37
SHKBP1-219ENST00000599575 C19orf44Q9H6X5 657 aa23.58■■□□□ 1.37
SHKBP1-219ENST00000599575 TRPM1Q7Z4N2 1603 aa23.58■■□□□ 1.36
SHKBP1-219ENST00000599575 MSH6P52701 1360 aa23.57■■□□□ 1.36
SHKBP1-219ENST00000599575 DCCP43146 1447 aa23.56■■□□□ 1.36
SHKBP1-219ENST00000599575 C14orf37Q86TY3 774 aa23.54■■□□□ 1.36
SHKBP1-219ENST00000599575 TRAK1Q9UPV9 953 aa23.54■■□□□ 1.36
SHKBP1-219ENST00000599575 ADGRL3Q9HAR2 1447 aa23.53■■□□□ 1.36
SHKBP1-219ENST00000599575 TOM1O60784 492 aa23.53■■□□□ 1.36
SHKBP1-219ENST00000599575 CADPS2Q86UW7 1296 aa23.52■■□□□ 1.36
SHKBP1-219ENST00000599575 POGKQ9P215 609 aa23.52■■□□□ 1.36
SHKBP1-219ENST00000599575 EIF3AQ14152 1382 aaKnown RBP23.52■■□□□ 1.36
SHKBP1-219ENST00000599575 PRAM1Q96QH2 718 aa23.51■■□□□ 1.35
SHKBP1-219ENST00000599575 CARD11Q9BXL7 1154 aa23.51■■□□□ 1.35
SHKBP1-219ENST00000599575 ATF3P18847 181 aa23.49■■□□□ 1.35
SHKBP1-219ENST00000599575 WAPLQ7Z5K2 1190 aa23.49■■□□□ 1.35
SHKBP1-219ENST00000599575 RBM33Q96EV2 1170 aaKnown RBP23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms