RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CHGAP10645 457 aaKnown RBP14.92□□□□□ -0.02
VRK3-216ENST00000599342 KCNA6P17658 529 aa14.91□□□□□ -0.02
VRK3-216ENST00000599342 TMEM131LA2VDJ0 1609 aa14.91□□□□□ -0.02
VRK3-216ENST00000599342 ZFYVE9O95405 1425 aa14.91□□□□□ -0.02
VRK3-216ENST00000599342 RIMS2Q9UQ26 1411 aa14.91□□□□□ -0.02
VRK3-216ENST00000599342 PLEKHG1Q9ULL1 1385 aa14.9□□□□□ -0.02
VRK3-216ENST00000599342 SENP3Q9H4L4 574 aaPredicted RBP14.9□□□□□ -0.02
VRK3-216ENST00000599342 TMEM94Q12767 1356 aa14.89□□□□□ -0.03
VRK3-216ENST00000599342 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.89□□□□□ -0.03
VRK3-216ENST00000599342 RRBP1Q9P2E9 1410 aaKnown RBP14.89□□□□□ -0.03
VRK3-216ENST00000599342 MYO5BQ9ULV0 1848 aa14.89□□□□□ -0.03
VRK3-216ENST00000599342 NKTRP30414 1462 aaKnown RBP14.89□□□□□ -0.03
VRK3-216ENST00000599342 PROSER2Q86WR7 435 aaPredicted RBP14.88□□□□□ -0.03
VRK3-216ENST00000599342 NWD1Q149M9 1564 aa14.88□□□□□ -0.03
VRK3-216ENST00000599342 MED1Q15648 1581 aaPredicted RBP14.88□□□□□ -0.03
VRK3-216ENST00000599342 XIRP1Q702N8 1843 aaKnown RBP14.87□□□□□ -0.03
VRK3-216ENST00000599342 SOCS7O14512 581 aa14.85□□□□□ -0.03
VRK3-216ENST00000599342 RBM33Q96EV2 1170 aaKnown RBP14.84□□□□□ -0.03
VRK3-216ENST00000599342 NUTM2DQ5VT03 806 aaPredicted RBP14.83□□□□□ -0.04
VRK3-216ENST00000599342 PHF23Q9BUL5 403 aaPredicted RBP14.83□□□□□ -0.04
VRK3-216ENST00000599342 MSH6P52701 1360 aa14.83□□□□□ -0.04
VRK3-216ENST00000599342 SPHKAPQ2M3C7 1700 aa14.83□□□□□ -0.04
VRK3-216ENST00000599342 DIP2AQ14689 1571 aa14.82□□□□□ -0.04
VRK3-216ENST00000599342 TBX22Q9Y458 520 aa14.82□□□□□ -0.04
VRK3-216ENST00000599342 NAIPQ13075 1403 aa14.82□□□□□ -0.04
VRK3-216ENST00000599342 FAM135BQ49AJ0 1406 aa14.82□□□□□ -0.04
VRK3-216ENST00000599342 ADAMTS13Q76LX8 1427 aa14.8□□□□□ -0.04
VRK3-216ENST00000599342 CHD2O14647 1828 aaKnown RBP14.8□□□□□ -0.04
VRK3-216ENST00000599342 ZNF326Q5BKZ1 582 aaKnown RBP14.79□□□□□ -0.04
VRK3-216ENST00000599342 C14orf37Q86TY3 774 aa14.79□□□□□ -0.04
VRK3-216ENST00000599342 PIK3R4Q99570 1358 aa14.79□□□□□ -0.04
VRK3-216ENST00000599342 ROBO1Q9Y6N7 1651 aa14.78□□□□□ -0.04
VRK3-216ENST00000599342 TRPM2O94759 1503 aa14.78□□□□□ -0.04
VRK3-216ENST00000599342 HFM1A2PYH4 1435 aa14.78□□□□□ -0.04
VRK3-216ENST00000599342 NCOA3Q9Y6Q9 1424 aa14.77□□□□□ -0.04
VRK3-216ENST00000599342 TRIM52Q96A61 297 aa14.77□□□□□ -0.05
VRK3-216ENST00000599342 CLTCL1P53675 1640 aa14.75□□□□□ -0.05
VRK3-216ENST00000599342 SETBP1Q9Y6X0 1596 aa14.74□□□□□ -0.05
VRK3-216ENST00000599342 SLAIN2Q9P270 581 aa14.74□□□□□ -0.05
VRK3-216ENST00000599342 AMOTL2Q9Y2J4 779 aa14.73□□□□□ -0.05
VRK3-216ENST00000599342 CADPS2Q86UW7 1296 aa14.72□□□□□ -0.05
VRK3-216ENST00000599342 SLC4A1APQ9BWU0 796 aaKnown RBP14.72□□□□□ -0.05
VRK3-216ENST00000599342 NRXN3Q9Y4C0 1643 aa14.71□□□□□ -0.05
VRK3-216ENST00000599342 ATF3P18847 181 aa14.71□□□□□ -0.05
VRK3-216ENST00000599342 C19orf44Q9H6X5 657 aa14.71□□□□□ -0.05
VRK3-216ENST00000599342 PTPRUQ92729 1446 aa14.71□□□□□ -0.05
VRK3-216ENST00000599342 NEXMIFQ5QGS0 1516 aa14.71□□□□□ -0.06
VRK3-216ENST00000599342 KIF1BO60333 1816 aa14.71□□□□□ -0.06
VRK3-216ENST00000599342 PHLPP1O60346 1717 aa14.69□□□□□ -0.06
VRK3-216ENST00000599342 XRN1Q8IZH2 1706 aaKnown RBP14.69□□□□□ -0.06
VRK3-216ENST00000599342 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.69□□□□□ -0.06
VRK3-216ENST00000599342 METP08581 1390 aa14.68□□□□□ -0.06
VRK3-216ENST00000599342 JCADQ9P266 1359 aa14.67□□□□□ -0.06
VRK3-216ENST00000599342 DCCP43146 1447 aa14.66□□□□□ -0.06
VRK3-216ENST00000599342 VGFO15240 615 aaPredicted RBP14.66□□□□□ -0.06
VRK3-216ENST00000599342 RPGRIP1LQ68CZ1 1315 aa14.64□□□□□ -0.07
VRK3-216ENST00000599342 COL16A1Q07092 1604 aaPredicted RBP14.63□□□□□ -0.07
VRK3-216ENST00000599342 AHDC1Q5TGY3 1603 aaPredicted RBP14.63□□□□□ -0.07
VRK3-216ENST00000599342 CCDC144AA2RUR9 1427 aa14.62□□□□□ -0.07
VRK3-216ENST00000599342 FOXD1Q16676 465 aa14.62□□□□□ -0.07
VRK3-216ENST00000599342 ADGRL3Q9HAR2 1447 aa14.62□□□□□ -0.07
VRK3-216ENST00000599342 RGS17Q9UGC6 210 aaPredicted RBP14.62□□□□□ -0.07
VRK3-216ENST00000599342 BRINP3Q76B58 766 aa14.61□□□□□ -0.07
VRK3-216ENST00000599342 MST1RQ04912 1400 aa14.6□□□□□ -0.07
VRK3-216ENST00000599342 MPHOSPH9Q99550 1183 aa14.6□□□□□ -0.07
VRK3-216ENST00000599342 ASXL1Q8IXJ9 1541 aa14.6□□□□□ -0.07
VRK3-216ENST00000599342 SPATA31A6Q5VVP1 1343 aa14.6□□□□□ -0.07
VRK3-216ENST00000599342 PTCH1Q13635 1447 aa14.59□□□□□ -0.07
VRK3-216ENST00000599342 PPLO60437 1756 aa14.59□□□□□ -0.07
VRK3-216ENST00000599342 ACIN1Q9UKV3 1341 aaKnown RBP14.59□□□□□ -0.07
VRK3-216ENST00000599342 SETD1AO15047 1707 aaKnown RBP14.58□□□□□ -0.07
VRK3-216ENST00000599342 NALCNQ8IZF0 1738 aa14.58□□□□□ -0.07
VRK3-216ENST00000599342 MEX3CQ5U5Q3 659 aaKnown RBP14.58□□□□□ -0.08
VRK3-216ENST00000599342 SHPRHQ149N8 1683 aa14.56□□□□□ -0.08
VRK3-216ENST00000599342 RGL3Q3MIN7 710 aa14.56□□□□□ -0.08
VRK3-216ENST00000599342 POTEAQ6S8J7 498 aa14.56□□□□□ -0.08
VRK3-216ENST00000599342 ROBO2Q9HCK4 1378 aa14.56□□□□□ -0.08
VRK3-216ENST00000599342 ANKRD30BQ9BXX2 1392 aa14.55□□□□□ -0.08
VRK3-216ENST00000599342 PRAG1Q86YV5 1406 aa14.55□□□□□ -0.08
VRK3-216ENST00000599342 SETD5Q9C0A6 1442 aa14.55□□□□□ -0.08
VRK3-216ENST00000599342 LRP6O75581 1613 aa14.55□□□□□ -0.08
VRK3-216ENST00000599342 SPATA31E1Q6ZUB1 1445 aa14.54□□□□□ -0.08
VRK3-216ENST00000599342 NHSL1Q5SYE7 1610 aa14.54□□□□□ -0.08
VRK3-216ENST00000599342 ADGRF5Q8IZF2 1346 aa14.53□□□□□ -0.08
VRK3-216ENST00000599342 C1orf167Q5SNV9 1468 aa14.52□□□□□ -0.08
VRK3-216ENST00000599342 LRRC59Q96AG4 307 aaKnown RBP14.52□□□□□ -0.09
VRK3-216ENST00000599342 NUTM2BA6NNL0 878 aaPredicted RBP14.51□□□□□ -0.09
VRK3-216ENST00000599342 NUTM2EB1AL46 878 aaPredicted RBP14.51□□□□□ -0.09
VRK3-216ENST00000599342 ZNF772Q68DY9 489 aaPredicted RBP14.51□□□□□ -0.09
VRK3-216ENST00000599342 NUTM2AQ8IVF1 878 aaPredicted RBP14.51□□□□□ -0.09
VRK3-216ENST00000599342 IFT172Q9UG01 1749 aa14.5□□□□□ -0.09
VRK3-216ENST00000599342 DDX17Q92841 729 aaKnown RBP14.5□□□□□ -0.09
VRK3-216ENST00000599342 RAB3GAP2Q9H2M9 1393 aa14.49□□□□□ -0.09
VRK3-216ENST00000599342 PIK3C2GO75747 1445 aa14.49□□□□□ -0.09
VRK3-216ENST00000599342 STK26Q9P289 416 aa14.48□□□□□ -0.09
VRK3-216ENST00000599342 LRPPRCP42704 1394 aaKnown RBP14.47□□□□□ -0.09
VRK3-216ENST00000599342 PNPLA6Q8IY17 1366 aa14.47□□□□□ -0.09
VRK3-216ENST00000599342 CDC42BPGQ6DT37 1551 aa14.47□□□□□ -0.09
VRK3-216ENST00000599342 TECPR2O15040 1411 aa14.47□□□□□ -0.09
VRK3-216ENST00000599342 ORAI2Q96SN7 254 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms