RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 TRIM52Q96A61 297 aa22.72■■□□□ 1.23
LIG1-215ENST00000597901 RIMS2Q9UQ26 1411 aa22.71■■□□□ 1.23
LIG1-215ENST00000597901 E9PCH4 1651 aa22.71■■□□□ 1.23
LIG1-215ENST00000597901 GCC2Q8IWJ2 1684 aa22.71■■□□□ 1.23
LIG1-215ENST00000597901 NUTM2DQ5VT03 806 aaPredicted RBP22.7■■□□□ 1.22
LIG1-215ENST00000597901 ZFYVE9O95405 1425 aa22.7■■□□□ 1.22
LIG1-215ENST00000597901 PROSER2Q86WR7 435 aaPredicted RBP22.68■■□□□ 1.22
LIG1-215ENST00000597901 PLEKHG1Q9ULL1 1385 aa22.67■■□□□ 1.22
LIG1-215ENST00000597901 HSPA1LP34931 641 aa22.67■■□□□ 1.22
LIG1-215ENST00000597901 TBX22Q9Y458 520 aa22.67■■□□□ 1.22
LIG1-215ENST00000597901 STRCP1A6NGW2 1772 aa22.67■■□□□ 1.22
LIG1-215ENST00000597901 HFM1A2PYH4 1435 aa22.66■■□□□ 1.22
LIG1-215ENST00000597901 TMEM131LA2VDJ0 1609 aa22.66■■□□□ 1.22
LIG1-215ENST00000597901 RBM33Q96EV2 1170 aaKnown RBP22.63■■□□□ 1.21
LIG1-215ENST00000597901 SLC4A1APQ9BWU0 796 aaKnown RBP22.63■■□□□ 1.21
LIG1-215ENST00000597901 TMEM94Q12767 1356 aa22.62■■□□□ 1.21
LIG1-215ENST00000597901 ZNF326Q5BKZ1 582 aaKnown RBP22.61■■□□□ 1.21
LIG1-215ENST00000597901 ILDR2Q71H61 639 aa22.59■■□□□ 1.21
LIG1-215ENST00000597901 ALKQ9UM73 1620 aa22.58■■□□□ 1.21
LIG1-215ENST00000597901 ADAMTS13Q76LX8 1427 aa22.56■■□□□ 1.2
LIG1-215ENST00000597901 MYO5BQ9ULV0 1848 aa22.54■■□□□ 1.2
LIG1-215ENST00000597901 SOCS7O14512 581 aa22.53■■□□□ 1.2
LIG1-215ENST00000597901 FOXD1Q16676 465 aa22.52■■□□□ 1.2
LIG1-215ENST00000597901 MPHOSPH9Q99550 1183 aa22.51■■□□□ 1.19
LIG1-215ENST00000597901 AMOTL2Q9Y2J4 779 aa22.51■■□□□ 1.19
LIG1-215ENST00000597901 PIK3R4Q99570 1358 aa22.5■■□□□ 1.19
LIG1-215ENST00000597901 NKTRP30414 1462 aaKnown RBP22.49■■□□□ 1.19
LIG1-215ENST00000597901 SPHKAPQ2M3C7 1700 aa22.48■■□□□ 1.19
LIG1-215ENST00000597901 TRPM2O94759 1503 aa22.47■■□□□ 1.19
LIG1-215ENST00000597901 SLAIN2Q9P270 581 aa22.47■■□□□ 1.19
LIG1-215ENST00000597901 MSH6P52701 1360 aa22.47■■□□□ 1.19
LIG1-215ENST00000597901 FAM135BQ49AJ0 1406 aa22.47■■□□□ 1.19
LIG1-215ENST00000597901 NWD1Q149M9 1564 aa22.46■■□□□ 1.19
LIG1-215ENST00000597901 VGFO15240 615 aaPredicted RBP22.46■■□□□ 1.19
LIG1-215ENST00000597901 XIRP1Q702N8 1843 aaKnown RBP22.45■■□□□ 1.19
LIG1-215ENST00000597901 C14orf37Q86TY3 774 aa22.45■■□□□ 1.18
LIG1-215ENST00000597901 PHF23Q9BUL5 403 aaPredicted RBP22.45■■□□□ 1.18
LIG1-215ENST00000597901 RPGRIP1LQ68CZ1 1315 aa22.45■■□□□ 1.18
LIG1-215ENST00000597901 ACIN1Q9UKV3 1341 aaKnown RBP22.45■■□□□ 1.18
LIG1-215ENST00000597901 CLTCL1P53675 1640 aa22.44■■□□□ 1.18
LIG1-215ENST00000597901 PTPRUQ92729 1446 aa22.44■■□□□ 1.18
LIG1-215ENST00000597901 C19orf44Q9H6X5 657 aa22.44■■□□□ 1.18
LIG1-215ENST00000597901 NCOA3Q9Y6Q9 1424 aa22.44■■□□□ 1.18
LIG1-215ENST00000597901 SETD5Q9C0A6 1442 aa22.43■■□□□ 1.18
LIG1-215ENST00000597901 CHD2O14647 1828 aaKnown RBP22.43■■□□□ 1.18
LIG1-215ENST00000597901 MED1Q15648 1581 aaPredicted RBP22.42■■□□□ 1.18
LIG1-215ENST00000597901 METP08581 1390 aa22.41■■□□□ 1.18
LIG1-215ENST00000597901 DIP2AQ14689 1571 aa22.41■■□□□ 1.18
LIG1-215ENST00000597901 ATF3P18847 181 aa22.38■■□□□ 1.17
LIG1-215ENST00000597901 RGL3Q3MIN7 710 aa22.38■■□□□ 1.17
LIG1-215ENST00000597901 CADPS2Q86UW7 1296 aa22.38■■□□□ 1.17
LIG1-215ENST00000597901 SETBP1Q9Y6X0 1596 aa22.38■■□□□ 1.17
LIG1-215ENST00000597901 NEXMIFQ5QGS0 1516 aa22.37■■□□□ 1.17
LIG1-215ENST00000597901 CCDC144AA2RUR9 1427 aa22.34■■□□□ 1.17
LIG1-215ENST00000597901 NRXN3Q9Y4C0 1643 aa22.33■■□□□ 1.17
LIG1-215ENST00000597901 RAB3GAP2Q9H2M9 1393 aa22.33■■□□□ 1.17
LIG1-215ENST00000597901 KIF1BO60333 1816 aa22.32■■□□□ 1.16
LIG1-215ENST00000597901 ADGRF5Q8IZF2 1346 aa22.3■■□□□ 1.16
LIG1-215ENST00000597901 HRCP23327 699 aa22.28■■□□□ 1.16
LIG1-215ENST00000597901 SPATA31E1Q6ZUB1 1445 aa22.28■■□□□ 1.16
LIG1-215ENST00000597901 ROBO1Q9Y6N7 1651 aa22.26■■□□□ 1.15
LIG1-215ENST00000597901 ANKRD30BQ9BXX2 1392 aa22.25■■□□□ 1.15
LIG1-215ENST00000597901 BRINP3Q76B58 766 aa22.24■■□□□ 1.15
LIG1-215ENST00000597901 XRN1Q8IZH2 1706 aaKnown RBP22.23■■□□□ 1.15
LIG1-215ENST00000597901 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.23■■□□□ 1.15
LIG1-215ENST00000597901 ROBO2Q9HCK4 1378 aa22.22■■□□□ 1.15
LIG1-215ENST00000597901 DCCP43146 1447 aa22.21■■□□□ 1.15
LIG1-215ENST00000597901 RGS17Q9UGC6 210 aaPredicted RBP22.2■■□□□ 1.14
LIG1-215ENST00000597901 TMEM132EQ6IEE7 984 aa22.19■■□□□ 1.14
LIG1-215ENST00000597901 STK26Q9P289 416 aa22.19■■□□□ 1.14
LIG1-215ENST00000597901 ADGRL3Q9HAR2 1447 aa22.18■■□□□ 1.14
LIG1-215ENST00000597901 JCADQ9P266 1359 aa22.18■■□□□ 1.14
LIG1-215ENST00000597901 C14orf93Q9H972 538 aaKnown RBP22.17■■□□□ 1.14
LIG1-215ENST00000597901 MST1RQ04912 1400 aa22.16■■□□□ 1.14
LIG1-215ENST00000597901 PPLO60437 1756 aa22.16■■□□□ 1.14
LIG1-215ENST00000597901 PTCH1Q13635 1447 aa22.15■■□□□ 1.14
LIG1-215ENST00000597901 WAPLQ7Z5K2 1190 aa22.14■■□□□ 1.13
LIG1-215ENST00000597901 CFAP70Q5T0N1 1121 aa22.13■■□□□ 1.13
LIG1-215ENST00000597901 PRAG1Q86YV5 1406 aa22.13■■□□□ 1.13
LIG1-215ENST00000597901 ABCC11Q96J66 1382 aa22.12■■□□□ 1.13
LIG1-215ENST00000597901 DDX17Q92841 729 aaKnown RBP22.12■■□□□ 1.13
LIG1-215ENST00000597901 LRPPRCP42704 1394 aaKnown RBP22.12■■□□□ 1.13
LIG1-215ENST00000597901 SETD1AO15047 1707 aaKnown RBP22.11■■□□□ 1.13
LIG1-215ENST00000597901 PHLPP1O60346 1717 aa22.11■■□□□ 1.13
LIG1-215ENST00000597901 ORAI2Q96SN7 254 aa22.11■■□□□ 1.13
LIG1-215ENST00000597901 PIK3C2GO75747 1445 aa22.11■■□□□ 1.13
LIG1-215ENST00000597901 LRRC59Q96AG4 307 aaKnown RBP22.1■■□□□ 1.13
LIG1-215ENST00000597901 SIRT1Q96EB6 747 aa22.1■■□□□ 1.13
LIG1-215ENST00000597901 SPATA31A6Q5VVP1 1343 aa22.09■■□□□ 1.13
LIG1-215ENST00000597901 C1orf167Q5SNV9 1468 aa22.09■■□□□ 1.13
LIG1-215ENST00000597901 KDM2AQ9Y2K7 1162 aa22.08■■□□□ 1.13
LIG1-215ENST00000597901 AHDC1Q5TGY3 1603 aaPredicted RBP22.08■■□□□ 1.13
LIG1-215ENST00000597901 COL16A1Q07092 1604 aaPredicted RBP22.07■■□□□ 1.12
LIG1-215ENST00000597901 POTEAQ6S8J7 498 aa22.07■■□□□ 1.12
LIG1-215ENST00000597901 DCAF11Q8TEB1 546 aa22.07■■□□□ 1.12
LIG1-215ENST00000597901 ASXL1Q8IXJ9 1541 aa22.06■■□□□ 1.12
LIG1-215ENST00000597901 TECPR2O15040 1411 aa22.06■■□□□ 1.12
LIG1-215ENST00000597901 DHX57Q6P158 1386 aaKnown RBP22.05■■□□□ 1.12
LIG1-215ENST00000597901 MEX3CQ5U5Q3 659 aaKnown RBP22.05■■□□□ 1.12
LIG1-215ENST00000597901 YTHDC2Q9H6S0 1430 aaKnown RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms