RNA–Protein interactions for RNA: ENST00000596708.1

CHMP2A-202, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 3

Gene CHMP2A, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-202ENST00000596708 RPRD2Q5VT52 1461 aaKnown RBP16.29■□□□□ 0.2
CHMP2A-202ENST00000596708 CHD2O14647 1828 aaKnown RBP16.29■□□□□ 0.2
CHMP2A-202ENST00000596708 PPP1R15AO75807 674 aaPredicted RBP16.27■□□□□ 0.2
CHMP2A-202ENST00000596708 CHGAP10645 457 aaKnown RBP16.27■□□□□ 0.2
CHMP2A-202ENST00000596708 HDGFP51858 240 aaKnown RBP16.27■□□□□ 0.2
CHMP2A-202ENST00000596708 ROBO1Q9Y6N7 1651 aa16.26■□□□□ 0.19
CHMP2A-202ENST00000596708 FAM135BQ49AJ0 1406 aa16.26■□□□□ 0.19
CHMP2A-202ENST00000596708 UNC13BO14795 1591 aa16.25■□□□□ 0.19
CHMP2A-202ENST00000596708 E9PCH4 1651 aa16.24■□□□□ 0.19
CHMP2A-202ENST00000596708 TMEM131LA2VDJ0 1609 aa16.24■□□□□ 0.19
CHMP2A-202ENST00000596708 NWD1Q149M9 1564 aa16.23■□□□□ 0.19
CHMP2A-202ENST00000596708 RIMS2Q9UQ26 1411 aa16.23■□□□□ 0.19
CHMP2A-202ENST00000596708 NKTRP30414 1462 aaKnown RBP16.22■□□□□ 0.19
CHMP2A-202ENST00000596708 ITGAEP38570 1179 aa16.22■□□□□ 0.19
CHMP2A-202ENST00000596708 MSH6P52701 1360 aa16.22■□□□□ 0.19
CHMP2A-202ENST00000596708 PLEKHG1Q9ULL1 1385 aa16.22■□□□□ 0.19
CHMP2A-202ENST00000596708 ZFYVE9O95405 1425 aa16.21■□□□□ 0.19
CHMP2A-202ENST00000596708 NUTM2DQ5VT03 806 aaPredicted RBP16.21■□□□□ 0.19
CHMP2A-202ENST00000596708 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.2■□□□□ 0.18
CHMP2A-202ENST00000596708 IQGAP3Q86VI3 1631 aa16.19■□□□□ 0.18
CHMP2A-202ENST00000596708 PHLPP1O60346 1717 aa16.19■□□□□ 0.18
CHMP2A-202ENST00000596708 ROCK1Q13464 1354 aa16.18■□□□□ 0.18
CHMP2A-202ENST00000596708 PPARGC1BQ86YN6 1023 aaKnown RBP16.18■□□□□ 0.18
CHMP2A-202ENST00000596708 SLAIN2Q9P270 581 aa16.18■□□□□ 0.18
CHMP2A-202ENST00000596708 RGS17Q9UGC6 210 aaPredicted RBP16.18■□□□□ 0.18
CHMP2A-202ENST00000596708 TBX22Q9Y458 520 aa16.18■□□□□ 0.18
CHMP2A-202ENST00000596708 NUP155O75694 1391 aa16.17■□□□□ 0.18
CHMP2A-202ENST00000596708 C14orf37Q86TY3 774 aa16.17■□□□□ 0.18
CHMP2A-202ENST00000596708 SPHKAPQ2M3C7 1700 aa16.13■□□□□ 0.17
CHMP2A-202ENST00000596708 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.13■□□□□ 0.17
CHMP2A-202ENST00000596708 ADAMTS13Q76LX8 1427 aa16.12■□□□□ 0.17
CHMP2A-202ENST00000596708 DIP2AQ14689 1571 aa16.12■□□□□ 0.17
CHMP2A-202ENST00000596708 POTEAQ6S8J7 498 aa16.11■□□□□ 0.17
CHMP2A-202ENST00000596708 NCOA3Q9Y6Q9 1424 aa16.11■□□□□ 0.17
CHMP2A-202ENST00000596708 PIK3R4Q99570 1358 aa16.1■□□□□ 0.17
CHMP2A-202ENST00000596708 JCADQ9P266 1359 aa16.1■□□□□ 0.17
CHMP2A-202ENST00000596708 TRPM2O94759 1503 aa16.09■□□□□ 0.17
CHMP2A-202ENST00000596708 ATF3P18847 181 aa16.09■□□□□ 0.17
CHMP2A-202ENST00000596708 ZNF326Q5BKZ1 582 aaKnown RBP16.09■□□□□ 0.17
CHMP2A-202ENST00000596708 CADPS2Q86UW7 1296 aa16.09■□□□□ 0.17
CHMP2A-202ENST00000596708 C19orf44Q9H6X5 657 aa16.09■□□□□ 0.17
CHMP2A-202ENST00000596708 AMOTL2Q9Y2J4 779 aa16.09■□□□□ 0.17
CHMP2A-202ENST00000596708 KIF1BO60333 1816 aa16.08■□□□□ 0.16
CHMP2A-202ENST00000596708 COL16A1Q07092 1604 aaPredicted RBP16.07■□□□□ 0.16
CHMP2A-202ENST00000596708 PTPRUQ92729 1446 aa16.04■□□□□ 0.16
CHMP2A-202ENST00000596708 MEX3CQ5U5Q3 659 aaKnown RBP16.04■□□□□ 0.16
CHMP2A-202ENST00000596708 NRXN3Q9Y4C0 1643 aa16.04■□□□□ 0.16
CHMP2A-202ENST00000596708 SETD1AO15047 1707 aaKnown RBP16.02■□□□□ 0.16
CHMP2A-202ENST00000596708 SHPRHQ149N8 1683 aa16.02■□□□□ 0.15
CHMP2A-202ENST00000596708 AHDC1Q5TGY3 1603 aaPredicted RBP16.01■□□□□ 0.15
CHMP2A-202ENST00000596708 SPATA31A6Q5VVP1 1343 aa16.01■□□□□ 0.15
CHMP2A-202ENST00000596708 XRN1Q8IZH2 1706 aaKnown RBP16.01■□□□□ 0.15
CHMP2A-202ENST00000596708 CLTCL1P53675 1640 aa16.01■□□□□ 0.15
CHMP2A-202ENST00000596708 SETBP1Q9Y6X0 1596 aa16■□□□□ 0.15
CHMP2A-202ENST00000596708 BRINP3Q76B58 766 aa15.99■□□□□ 0.15
CHMP2A-202ENST00000596708 LRP6O75581 1613 aa15.98■□□□□ 0.15
CHMP2A-202ENST00000596708 TRIM52Q96A61 297 aa15.98■□□□□ 0.15
CHMP2A-202ENST00000596708 METP08581 1390 aa15.98■□□□□ 0.15
CHMP2A-202ENST00000596708 NUTM2BA6NNL0 878 aaPredicted RBP15.97■□□□□ 0.15
CHMP2A-202ENST00000596708 NUTM2EB1AL46 878 aaPredicted RBP15.97■□□□□ 0.15
CHMP2A-202ENST00000596708 ZNF772Q68DY9 489 aaPredicted RBP15.97■□□□□ 0.15
CHMP2A-202ENST00000596708 NUTM2AQ8IVF1 878 aaPredicted RBP15.97■□□□□ 0.15
CHMP2A-202ENST00000596708 NEXMIFQ5QGS0 1516 aa15.97■□□□□ 0.15
CHMP2A-202ENST00000596708 DCCP43146 1447 aa15.96■□□□□ 0.15
CHMP2A-202ENST00000596708 NAIPQ13075 1403 aa15.95■□□□□ 0.14
CHMP2A-202ENST00000596708 RRBP1Q9P2E9 1410 aaKnown RBP15.95■□□□□ 0.14
CHMP2A-202ENST00000596708 ASXL1Q8IXJ9 1541 aa15.94■□□□□ 0.14
CHMP2A-202ENST00000596708 NHSL1Q5SYE7 1610 aa15.94■□□□□ 0.14
CHMP2A-202ENST00000596708 NALCNQ8IZF0 1738 aa15.94■□□□□ 0.14
CHMP2A-202ENST00000596708 MST1RQ04912 1400 aa15.94■□□□□ 0.14
CHMP2A-202ENST00000596708 VGFO15240 615 aaPredicted RBP15.92■□□□□ 0.14
CHMP2A-202ENST00000596708 LRRC59Q96AG4 307 aaKnown RBP15.92■□□□□ 0.14
CHMP2A-202ENST00000596708 ADGRL3Q9HAR2 1447 aa15.91■□□□□ 0.14
CHMP2A-202ENST00000596708 PPLO60437 1756 aa15.9■□□□□ 0.14
CHMP2A-202ENST00000596708 DDX17Q92841 729 aaKnown RBP15.9■□□□□ 0.14
CHMP2A-202ENST00000596708 SLC4A1APQ9BWU0 796 aaKnown RBP15.9■□□□□ 0.14
CHMP2A-202ENST00000596708 SETD5Q9C0A6 1442 aa15.89■□□□□ 0.13
CHMP2A-202ENST00000596708 RXRBP28702 533 aa15.89■□□□□ 0.13
CHMP2A-202ENST00000596708 AFF2P51816 1311 aa15.87■□□□□ 0.13
CHMP2A-202ENST00000596708 RPGRIP1LQ68CZ1 1315 aa15.87■□□□□ 0.13
CHMP2A-202ENST00000596708 HFM1A2PYH4 1435 aa15.86■□□□□ 0.13
CHMP2A-202ENST00000596708 C8orf37Q96NL8 207 aa15.85■□□□□ 0.13
CHMP2A-202ENST00000596708 C1orf167Q5SNV9 1468 aa15.84■□□□□ 0.13
CHMP2A-202ENST00000596708 UPF1Q92900 1129 aaKnown RBP eCLIP15.84■□□□□ 0.13
CHMP2A-202ENST00000596708 PNPLA6Q8IY17 1366 aa15.84■□□□□ 0.13
CHMP2A-202ENST00000596708 ROBO2Q9HCK4 1378 aa15.84■□□□□ 0.13
CHMP2A-202ENST00000596708 PTCH1Q13635 1447 aa15.84■□□□□ 0.13
CHMP2A-202ENST00000596708 FOXD1Q16676 465 aa15.83■□□□□ 0.12
CHMP2A-202ENST00000596708 ORAI2Q96SN7 254 aa15.83■□□□□ 0.12
CHMP2A-202ENST00000596708 QTRT2Q9H974 415 aaKnown RBP15.82■□□□□ 0.12
CHMP2A-202ENST00000596708 ADAMTS2O95450 1211 aa15.81■□□□□ 0.12
CHMP2A-202ENST00000596708 NGLY1Q96IV0 654 aa15.81■□□□□ 0.12
CHMP2A-202ENST00000596708 LAMC1P11047 1609 aa15.8■□□□□ 0.12
CHMP2A-202ENST00000596708 RGL3Q3MIN7 710 aa15.8■□□□□ 0.12
CHMP2A-202ENST00000596708 CDK12Q9NYV4 1490 aaPredicted RBP15.79■□□□□ 0.12
CHMP2A-202ENST00000596708 RBM6P78332 1123 aaKnown RBP15.79■□□□□ 0.12
CHMP2A-202ENST00000596708 SOS2Q07890 1332 aaPredicted RBP15.78■□□□□ 0.12
CHMP2A-202ENST00000596708 CCDC144AA2RUR9 1427 aa15.77■□□□□ 0.12
CHMP2A-202ENST00000596708 IFT172Q9UG01 1749 aa15.77■□□□□ 0.12
CHMP2A-202ENST00000596708 ADGRF5Q8IZF2 1346 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms