RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 LTKP29376 864 aa12.2□□□□□ -0.46
VRK3-211ENST00000596445 HDGFP51858 240 aaKnown RBP12.2□□□□□ -0.46
VRK3-211ENST00000596445 ZNF326Q5BKZ1 582 aaKnown RBP12.2□□□□□ -0.46
VRK3-211ENST00000596445 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.19□□□□□ -0.46
VRK3-211ENST00000596445 DMRT2Q9Y5R5 561 aa12.19□□□□□ -0.46
VRK3-211ENST00000596445 MED14O60244 1454 aa12.19□□□□□ -0.46
VRK3-211ENST00000596445 PPLO60437 1756 aa12.18□□□□□ -0.46
VRK3-211ENST00000596445 RPGRIP1LQ68CZ1 1315 aa12.18□□□□□ -0.46
VRK3-211ENST00000596445 NEXMIFQ5QGS0 1516 aa12.18□□□□□ -0.46
VRK3-211ENST00000596445 IQGAP1P46940 1657 aa12.17□□□□□ -0.46
VRK3-211ENST00000596445 RGL3Q3MIN7 710 aa12.17□□□□□ -0.46
VRK3-211ENST00000596445 NPHP4O75161 1426 aaPredicted RBP12.17□□□□□ -0.46
VRK3-211ENST00000596445 IFT172Q9UG01 1749 aa12.17□□□□□ -0.46
VRK3-211ENST00000596445 PPP1R15AO75807 674 aaPredicted RBP12.16□□□□□ -0.46
VRK3-211ENST00000596445 VGFO15240 615 aaPredicted RBP12.15□□□□□ -0.46
VRK3-211ENST00000596445 NUTM2DQ5VT03 806 aaPredicted RBP12.15□□□□□ -0.46
VRK3-211ENST00000596445 PLEKHG1Q9ULL1 1385 aa12.15□□□□□ -0.46
VRK3-211ENST00000596445 SIN3AQ96ST3 1273 aa12.14□□□□□ -0.47
VRK3-211ENST00000596445 CLSPNQ9HAW4 1339 aa12.13□□□□□ -0.47
VRK3-211ENST00000596445 NEUROD1Q13562 356 aa12.12□□□□□ -0.47
VRK3-211ENST00000596445 CCER1Q8TC90 406 aaPredicted RBP12.12□□□□□ -0.47
VRK3-211ENST00000596445 SETBP1Q9Y6X0 1596 aa12.12□□□□□ -0.47
VRK3-211ENST00000596445 BCANQ96GW7 911 aa12.11□□□□□ -0.47
VRK3-211ENST00000596445 STAC3Q96MF2 364 aa12.11□□□□□ -0.47
VRK3-211ENST00000596445 DIP2AQ14689 1571 aa12.1□□□□□ -0.47
VRK3-211ENST00000596445 MYOM2P54296 1465 aa12.1□□□□□ -0.47
VRK3-211ENST00000596445 DCAF11Q8TEB1 546 aa12.1□□□□□ -0.47
VRK3-211ENST00000596445 NRXN3Q9Y4C0 1643 aa12.1□□□□□ -0.47
VRK3-211ENST00000596445 ADGRF5Q8IZF2 1346 aa12.1□□□□□ -0.47
VRK3-211ENST00000596445 SLC26A8Q96RN1 970 aa12.09□□□□□ -0.47
VRK3-211ENST00000596445 SENP3Q9H4L4 574 aaPredicted RBP12.09□□□□□ -0.47
VRK3-211ENST00000596445 TBX22Q9Y458 520 aa12.09□□□□□ -0.47
VRK3-211ENST00000596445 ADAMTS13Q76LX8 1427 aa12.09□□□□□ -0.47
VRK3-211ENST00000596445 NRXN1Q9ULB1 1477 aa12.08□□□□□ -0.47
VRK3-211ENST00000596445 PIK3C2GO75747 1445 aa12.07□□□□□ -0.48
VRK3-211ENST00000596445 L3MBTL2Q969R5 705 aa12.07□□□□□ -0.48
VRK3-211ENST00000596445 KDM2AQ9Y2K7 1162 aa12.07□□□□□ -0.48
VRK3-211ENST00000596445 ALKQ9UM73 1620 aa12.07□□□□□ -0.48
VRK3-211ENST00000596445 CHD2O14647 1828 aaKnown RBP12.07□□□□□ -0.48
VRK3-211ENST00000596445 SETD1AO15047 1707 aaKnown RBP12.06□□□□□ -0.48
VRK3-211ENST00000596445 TONSLQ96HA7 1378 aa12.05□□□□□ -0.48
VRK3-211ENST00000596445 PIK3R4Q99570 1358 aa12.05□□□□□ -0.48
VRK3-211ENST00000596445 LAMC1P11047 1609 aa12.05□□□□□ -0.48
VRK3-211ENST00000596445 ZNF335Q9H4Z2 1342 aaPredicted RBP12.05□□□□□ -0.48
VRK3-211ENST00000596445 STRCP1A6NGW2 1772 aa12.05□□□□□ -0.48
VRK3-211ENST00000596445 C14orf93Q9H972 538 aaKnown RBP12.03□□□□□ -0.48
VRK3-211ENST00000596445 NWD1Q149M9 1564 aa12.03□□□□□ -0.48
VRK3-211ENST00000596445 LTBP4Q8N2S1 1624 aa12.03□□□□□ -0.48
VRK3-211ENST00000596445 METP08581 1390 aa12.03□□□□□ -0.48
VRK3-211ENST00000596445 PRAG1Q86YV5 1406 aa12.03□□□□□ -0.48
VRK3-211ENST00000596445 KCNA6P17658 529 aa12.02□□□□□ -0.49
VRK3-211ENST00000596445 TIMELESSQ9UNS1 1208 aa12.02□□□□□ -0.49
VRK3-211ENST00000596445 KIAA1210Q9ULL0 1709 aa12.02□□□□□ -0.49
VRK3-211ENST00000596445 CPS1P31327 1500 aa12.01□□□□□ -0.49
VRK3-211ENST00000596445 CFAP70Q5T0N1 1121 aa12.01□□□□□ -0.49
VRK3-211ENST00000596445 PTPRUQ92729 1446 aa12.01□□□□□ -0.49
VRK3-211ENST00000596445 XRN1Q8IZH2 1706 aaKnown RBP12□□□□□ -0.49
VRK3-211ENST00000596445 AMOTL2Q9Y2J4 779 aa12□□□□□ -0.49
VRK3-211ENST00000596445 NKTRP30414 1462 aaKnown RBP12□□□□□ -0.49
VRK3-211ENST00000596445 ASXL1Q8IXJ9 1541 aa11.99□□□□□ -0.49
VRK3-211ENST00000596445 TRPM1Q7Z4N2 1603 aa11.98□□□□□ -0.49
VRK3-211ENST00000596445 TMEM132EQ6IEE7 984 aa11.98□□□□□ -0.49
VRK3-211ENST00000596445 ADGRB1O14514 1584 aa11.97□□□□□ -0.49
VRK3-211ENST00000596445 LRRC7Q96NW7 1537 aa11.97□□□□□ -0.49
VRK3-211ENST00000596445 YTHDC2Q9H6S0 1430 aaKnown RBP11.97□□□□□ -0.49
VRK3-211ENST00000596445 LRPPRCP42704 1394 aaKnown RBP11.97□□□□□ -0.49
VRK3-211ENST00000596445 XIRP1Q702N8 1843 aaKnown RBP11.97□□□□□ -0.49
VRK3-211ENST00000596445 KNDC1Q76NI1 1749 aa11.97□□□□□ -0.49
VRK3-211ENST00000596445 ABCC11Q96J66 1382 aa11.96□□□□□ -0.49
VRK3-211ENST00000596445 NBPF8Q3BBV2 869 aa11.96□□□□□ -0.49
VRK3-211ENST00000596445 PROSER2Q86WR7 435 aaPredicted RBP11.96□□□□□ -0.49
VRK3-211ENST00000596445 TECPR2O15040 1411 aa11.95□□□□□ -0.5
VRK3-211ENST00000596445 PTCH1Q13635 1447 aa11.95□□□□□ -0.5
VRK3-211ENST00000596445 CERKQ8TCT0 537 aa11.95□□□□□ -0.5
VRK3-211ENST00000596445 STK26Q9P289 416 aa11.95□□□□□ -0.5
VRK3-211ENST00000596445 IQSEC2Q5JU85 1478 aa11.95□□□□□ -0.5
VRK3-211ENST00000596445 TMEM94Q12767 1356 aa11.94□□□□□ -0.5
VRK3-211ENST00000596445 ROBO2Q9HCK4 1378 aa11.94□□□□□ -0.5
VRK3-211ENST00000596445 NBPF1Q3BBV0 1214 aa11.94□□□□□ -0.5
VRK3-211ENST00000596445 NCOA3Q9Y6Q9 1424 aa11.94□□□□□ -0.5
VRK3-211ENST00000596445 SIRT1Q96EB6 747 aa11.93□□□□□ -0.5
VRK3-211ENST00000596445 RALGAPBQ86X10 1494 aa11.93□□□□□ -0.5
VRK3-211ENST00000596445 ROCK2O75116 1388 aaKnown RBP11.92□□□□□ -0.5
VRK3-211ENST00000596445 DLC1Q96QB1 1528 aa11.92□□□□□ -0.5
VRK3-211ENST00000596445 FAM135BQ49AJ0 1406 aa11.92□□□□□ -0.5
VRK3-211ENST00000596445 RBM33Q96EV2 1170 aaKnown RBP11.91□□□□□ -0.5
VRK3-211ENST00000596445 TRAK1Q9UPV9 953 aa11.91□□□□□ -0.5
VRK3-211ENST00000596445 ARHGEF28Q8N1W1 1705 aaKnown RBP11.91□□□□□ -0.5
VRK3-211ENST00000596445 GPRASP1Q5JY77 1395 aa11.91□□□□□ -0.5
VRK3-211ENST00000596445 NALCNQ8IZF0 1738 aa11.89□□□□□ -0.51
VRK3-211ENST00000596445 WAPLQ7Z5K2 1190 aa11.89□□□□□ -0.51
VRK3-211ENST00000596445 C14orf37Q86TY3 774 aa11.89□□□□□ -0.51
VRK3-211ENST00000596445 PRAM1Q96QH2 718 aa11.89□□□□□ -0.51
VRK3-211ENST00000596445 C19orf44Q9H6X5 657 aa11.89□□□□□ -0.51
VRK3-211ENST00000596445 MSH6P52701 1360 aa11.89□□□□□ -0.51
VRK3-211ENST00000596445 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.89□□□□□ -0.51
VRK3-211ENST00000596445 ADGRL3Q9HAR2 1447 aa11.88□□□□□ -0.51
VRK3-211ENST00000596445 CARD11Q9BXL7 1154 aa11.88□□□□□ -0.51
VRK3-211ENST00000596445 POGKQ9P215 609 aa11.88□□□□□ -0.51
VRK3-211ENST00000596445 PLEKHH1Q9ULM0 1364 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms