RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 SLC26A8Q96RN1 970 aa24.56■■□□□ 1.52
USHBP1-206ENST00000596436 TMEM131LA2VDJ0 1609 aa24.56■■□□□ 1.52
USHBP1-206ENST00000596436 MYO5BQ9ULV0 1848 aa24.56■■□□□ 1.52
USHBP1-206ENST00000596436 ROBO1Q9Y6N7 1651 aa24.56■■□□□ 1.52
USHBP1-206ENST00000596436 SENP3Q9H4L4 574 aaPredicted RBP24.54■■□□□ 1.52
USHBP1-206ENST00000596436 RGS17Q9UGC6 210 aaPredicted RBP24.53■■□□□ 1.52
USHBP1-206ENST00000596436 CHD2O14647 1828 aaKnown RBP24.53■■□□□ 1.52
USHBP1-206ENST00000596436 PLEKHG1Q9ULL1 1385 aa24.53■■□□□ 1.52
USHBP1-206ENST00000596436 FAM50AQ14320 339 aaKnown RBP24.5■■□□□ 1.51
USHBP1-206ENST00000596436 PROSER2Q86WR7 435 aaPredicted RBP24.5■■□□□ 1.51
USHBP1-206ENST00000596436 E9PCH4 1651 aa24.5■■□□□ 1.51
USHBP1-206ENST00000596436 RIMS2Q9UQ26 1411 aa24.48■■□□□ 1.51
USHBP1-206ENST00000596436 IQGAP3Q86VI3 1631 aa24.47■■□□□ 1.51
USHBP1-206ENST00000596436 ROCK1Q13464 1354 aa24.47■■□□□ 1.51
USHBP1-206ENST00000596436 RBM33Q96EV2 1170 aaKnown RBP24.45■■□□□ 1.5
USHBP1-206ENST00000596436 MSH6P52701 1360 aa24.44■■□□□ 1.5
USHBP1-206ENST00000596436 NCOA3Q9Y6Q9 1424 aa24.43■■□□□ 1.5
USHBP1-206ENST00000596436 DIP2AQ14689 1571 aa24.42■■□□□ 1.5
USHBP1-206ENST00000596436 TBX22Q9Y458 520 aa24.42■■□□□ 1.5
USHBP1-206ENST00000596436 ADAMTS13Q76LX8 1427 aa24.42■■□□□ 1.5
USHBP1-206ENST00000596436 HDGFP51858 240 aaKnown RBP24.41■■□□□ 1.5
USHBP1-206ENST00000596436 SLAIN2Q9P270 581 aa24.39■■□□□ 1.49
USHBP1-206ENST00000596436 PHLPP1O60346 1717 aa24.38■■□□□ 1.49
USHBP1-206ENST00000596436 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.38■■□□□ 1.49
USHBP1-206ENST00000596436 PIK3R4Q99570 1358 aa24.38■■□□□ 1.49
USHBP1-206ENST00000596436 COL16A1Q07092 1604 aaPredicted RBP24.37■■□□□ 1.49
USHBP1-206ENST00000596436 BCANQ96GW7 911 aa24.37■■□□□ 1.49
USHBP1-206ENST00000596436 PPP1R15AO75807 674 aaPredicted RBP24.36■■□□□ 1.49
USHBP1-206ENST00000596436 POTEAQ6S8J7 498 aa24.34■■□□□ 1.49
USHBP1-206ENST00000596436 RRBP1Q9P2E9 1410 aaKnown RBP24.33■■□□□ 1.49
USHBP1-206ENST00000596436 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.32■■□□□ 1.48
USHBP1-206ENST00000596436 JCADQ9P266 1359 aa24.32■■□□□ 1.48
USHBP1-206ENST00000596436 TRPM2O94759 1503 aa24.3■■□□□ 1.48
USHBP1-206ENST00000596436 AHDC1Q5TGY3 1603 aaPredicted RBP24.3■■□□□ 1.48
USHBP1-206ENST00000596436 NUP155O75694 1391 aa24.29■■□□□ 1.48
USHBP1-206ENST00000596436 NRXN3Q9Y4C0 1643 aa24.29■■□□□ 1.48
USHBP1-206ENST00000596436 PTPRUQ92729 1446 aa24.27■■□□□ 1.48
USHBP1-206ENST00000596436 SPHKAPQ2M3C7 1700 aa24.27■■□□□ 1.48
USHBP1-206ENST00000596436 CHGAP10645 457 aaKnown RBP24.27■■□□□ 1.48
USHBP1-206ENST00000596436 SETBP1Q9Y6X0 1596 aa24.27■■□□□ 1.48
USHBP1-206ENST00000596436 XRN1Q8IZH2 1706 aaKnown RBP24.27■■□□□ 1.48
USHBP1-206ENST00000596436 NUTM2DQ5VT03 806 aaPredicted RBP24.25■■□□□ 1.47
USHBP1-206ENST00000596436 C19orf44Q9H6X5 657 aa24.25■■□□□ 1.47
USHBP1-206ENST00000596436 SHPRHQ149N8 1683 aa24.24■■□□□ 1.47
USHBP1-206ENST00000596436 CADPS2Q86UW7 1296 aa24.24■■□□□ 1.47
USHBP1-206ENST00000596436 DCCP43146 1447 aa24.23■■□□□ 1.47
USHBP1-206ENST00000596436 LRP6O75581 1613 aa24.23■■□□□ 1.47
USHBP1-206ENST00000596436 SPATA31A6Q5VVP1 1343 aa24.21■■□□□ 1.47
USHBP1-206ENST00000596436 AMOTL2Q9Y2J4 779 aa24.2■■□□□ 1.46
USHBP1-206ENST00000596436 ITGAEP38570 1179 aa24.19■■□□□ 1.46
USHBP1-206ENST00000596436 ATF3P18847 181 aa24.18■■□□□ 1.46
USHBP1-206ENST00000596436 C14orf37Q86TY3 774 aa24.18■■□□□ 1.46
USHBP1-206ENST00000596436 SETD1AO15047 1707 aaKnown RBP24.17■■□□□ 1.46
USHBP1-206ENST00000596436 CLTCL1P53675 1640 aa24.15■■□□□ 1.46
USHBP1-206ENST00000596436 NEXMIFQ5QGS0 1516 aa24.15■■□□□ 1.46
USHBP1-206ENST00000596436 BRINP3Q76B58 766 aa24.14■■□□□ 1.45
USHBP1-206ENST00000596436 ASXL1Q8IXJ9 1541 aa24.14■■□□□ 1.45
USHBP1-206ENST00000596436 NHSL1Q5SYE7 1610 aa24.13■■□□□ 1.45
USHBP1-206ENST00000596436 MST1RQ04912 1400 aa24.13■■□□□ 1.45
USHBP1-206ENST00000596436 METP08581 1390 aa24.12■■□□□ 1.45
USHBP1-206ENST00000596436 SETD5Q9C0A6 1442 aa24.1■■□□□ 1.45
USHBP1-206ENST00000596436 NALCNQ8IZF0 1738 aa24.08■■□□□ 1.45
USHBP1-206ENST00000596436 NAIPQ13075 1403 aa24.08■■□□□ 1.44
USHBP1-206ENST00000596436 ADGRL3Q9HAR2 1447 aa24.08■■□□□ 1.44
USHBP1-206ENST00000596436 KIF1BO60333 1816 aa24.07■■□□□ 1.44
USHBP1-206ENST00000596436 ZNF772Q68DY9 489 aaPredicted RBP24.06■■□□□ 1.44
USHBP1-206ENST00000596436 ZNF326Q5BKZ1 582 aaKnown RBP24.05■■□□□ 1.44
USHBP1-206ENST00000596436 PRAG1Q86YV5 1406 aa24.04■■□□□ 1.44
USHBP1-206ENST00000596436 LAMC1P11047 1609 aa24.03■■□□□ 1.44
USHBP1-206ENST00000596436 MEX3CQ5U5Q3 659 aaKnown RBP24.02■■□□□ 1.44
USHBP1-206ENST00000596436 PTCH1Q13635 1447 aa24.01■■□□□ 1.43
USHBP1-206ENST00000596436 CDK12Q9NYV4 1490 aaPredicted RBP24■■□□□ 1.43
USHBP1-206ENST00000596436 HFM1A2PYH4 1435 aa23.97■■□□□ 1.43
USHBP1-206ENST00000596436 LRRC59Q96AG4 307 aaKnown RBP23.96■■□□□ 1.43
USHBP1-206ENST00000596436 C1orf167Q5SNV9 1468 aa23.95■■□□□ 1.42
USHBP1-206ENST00000596436 PNPLA6Q8IY17 1366 aa23.95■■□□□ 1.42
USHBP1-206ENST00000596436 PPLO60437 1756 aa23.94■■□□□ 1.42
USHBP1-206ENST00000596436 UPF1Q92900 1129 aaKnown RBP eCLIP23.94■■□□□ 1.42
USHBP1-206ENST00000596436 ROBO2Q9HCK4 1378 aa23.92■■□□□ 1.42
USHBP1-206ENST00000596436 AFF2P51816 1311 aa23.92■■□□□ 1.42
USHBP1-206ENST00000596436 NUTM2BA6NNL0 878 aaPredicted RBP23.92■■□□□ 1.42
USHBP1-206ENST00000596436 NUTM2EB1AL46 878 aaPredicted RBP23.92■■□□□ 1.42
USHBP1-206ENST00000596436 VGFO15240 615 aaPredicted RBP23.92■■□□□ 1.42
USHBP1-206ENST00000596436 RXRBP28702 533 aa23.92■■□□□ 1.42
USHBP1-206ENST00000596436 NUTM2AQ8IVF1 878 aaPredicted RBP23.92■■□□□ 1.42
USHBP1-206ENST00000596436 RPGRIP1LQ68CZ1 1315 aa23.91■■□□□ 1.42
USHBP1-206ENST00000596436 TRIM52Q96A61 297 aa23.91■■□□□ 1.42
USHBP1-206ENST00000596436 DDX17Q92841 729 aaKnown RBP23.9■■□□□ 1.42
USHBP1-206ENST00000596436 SOS2Q07890 1332 aaPredicted RBP23.87■■□□□ 1.41
USHBP1-206ENST00000596436 COL22A1Q8NFW1 1626 aaPredicted RBP23.84■■□□□ 1.41
USHBP1-206ENST00000596436 CDC42BPGQ6DT37 1551 aa23.84■■□□□ 1.41
USHBP1-206ENST00000596436 RGS12O14924 1447 aa23.84■■□□□ 1.41
USHBP1-206ENST00000596436 SLC4A1APQ9BWU0 796 aaKnown RBP23.83■■□□□ 1.41
USHBP1-206ENST00000596436 ORAI2Q96SN7 254 aa23.82■■□□□ 1.4
USHBP1-206ENST00000596436 C8orf37Q96NL8 207 aa23.81■■□□□ 1.4
USHBP1-206ENST00000596436 IFT172Q9UG01 1749 aa23.81■■□□□ 1.4
USHBP1-206ENST00000596436 RBM6P78332 1123 aaKnown RBP23.8■■□□□ 1.4
USHBP1-206ENST00000596436 TECPR2O15040 1411 aa23.79■■□□□ 1.4
USHBP1-206ENST00000596436 QTRT2Q9H974 415 aaKnown RBP23.79■■□□□ 1.4
USHBP1-206ENST00000596436 SPATA31E1Q6ZUB1 1445 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms