RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 NEXMIFQ5QGS0 1516 aa15.52■□□□□ 0.07
LIG1-210ENST00000596332 STAG3Q9UJ98 1225 aa15.51■□□□□ 0.07
LIG1-210ENST00000596332 NUTM2DQ5VT03 806 aaPredicted RBP15.5■□□□□ 0.07
LIG1-210ENST00000596332 SCAF11Q99590 1463 aaKnown RBP15.49■□□□□ 0.07
LIG1-210ENST00000596332 RGL3Q3MIN7 710 aa15.49■□□□□ 0.07
LIG1-210ENST00000596332 KIF1BO60333 1816 aa15.49■□□□□ 0.07
LIG1-210ENST00000596332 RPGRIP1LQ68CZ1 1315 aa15.48■□□□□ 0.07
LIG1-210ENST00000596332 ADGRF5Q8IZF2 1346 aa15.46■□□□□ 0.07
LIG1-210ENST00000596332 NPHP4O75161 1426 aaPredicted RBP15.46■□□□□ 0.07
LIG1-210ENST00000596332 PLEKHG1Q9ULL1 1385 aa15.46■□□□□ 0.07
LIG1-210ENST00000596332 ADAMTS13Q76LX8 1427 aa15.45■□□□□ 0.06
LIG1-210ENST00000596332 ZNF326Q5BKZ1 582 aaKnown RBP15.45■□□□□ 0.06
LIG1-210ENST00000596332 POLR1AO95602 1720 aaPredicted RBP15.45■□□□□ 0.06
LIG1-210ENST00000596332 IFT172Q9UG01 1749 aa15.45■□□□□ 0.06
LIG1-210ENST00000596332 NRXN3Q9Y4C0 1643 aa15.44■□□□□ 0.06
LIG1-210ENST00000596332 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.44■□□□□ 0.06
LIG1-210ENST00000596332 EID1Q9Y6B2 187 aa15.44■□□□□ 0.06
LIG1-210ENST00000596332 NRXN1Q9ULB1 1477 aa15.44■□□□□ 0.06
LIG1-210ENST00000596332 PPLO60437 1756 aa15.44■□□□□ 0.06
LIG1-210ENST00000596332 NEUROD1Q13562 356 aa15.43■□□□□ 0.06
LIG1-210ENST00000596332 L3MBTL2Q969R5 705 aa15.43■□□□□ 0.06
LIG1-210ENST00000596332 CLSPNQ9HAW4 1339 aa15.42■□□□□ 0.06
LIG1-210ENST00000596332 VGFO15240 615 aaPredicted RBP15.41■□□□□ 0.06
LIG1-210ENST00000596332 HDGFP51858 240 aaKnown RBP15.41■□□□□ 0.06
LIG1-210ENST00000596332 SLC26A8Q96RN1 970 aa15.41■□□□□ 0.06
LIG1-210ENST00000596332 IQGAP1P46940 1657 aa15.41■□□□□ 0.06
LIG1-210ENST00000596332 SETBP1Q9Y6X0 1596 aa15.41■□□□□ 0.06
LIG1-210ENST00000596332 DCAF11Q8TEB1 546 aa15.4■□□□□ 0.06
LIG1-210ENST00000596332 TBX22Q9Y458 520 aa15.4■□□□□ 0.06
LIG1-210ENST00000596332 DMRT2Q9Y5R5 561 aa15.4■□□□□ 0.06
LIG1-210ENST00000596332 MYOM2P54296 1465 aa15.4■□□□□ 0.06
LIG1-210ENST00000596332 PIK3C2GO75747 1445 aa15.38■□□□□ 0.05
LIG1-210ENST00000596332 METP08581 1390 aa15.37■□□□□ 0.05
LIG1-210ENST00000596332 PTPRUQ92729 1446 aa15.37■□□□□ 0.05
LIG1-210ENST00000596332 KDM2AQ9Y2K7 1162 aa15.37■□□□□ 0.05
LIG1-210ENST00000596332 ZNF335Q9H4Z2 1342 aaPredicted RBP15.37■□□□□ 0.05
LIG1-210ENST00000596332 SETD1AO15047 1707 aaKnown RBP15.37■□□□□ 0.05
LIG1-210ENST00000596332 LTBP4Q8N2S1 1624 aa15.36■□□□□ 0.05
LIG1-210ENST00000596332 PPP1R15AO75807 674 aaPredicted RBP15.36■□□□□ 0.05
LIG1-210ENST00000596332 CCER1Q8TC90 406 aaPredicted RBP15.36■□□□□ 0.05
LIG1-210ENST00000596332 C14orf93Q9H972 538 aaKnown RBP15.36■□□□□ 0.05
LIG1-210ENST00000596332 ALKQ9UM73 1620 aa15.35■□□□□ 0.05
LIG1-210ENST00000596332 STRCP1A6NGW2 1772 aa15.35■□□□□ 0.05
LIG1-210ENST00000596332 NBPF8Q3BBV2 869 aa15.35■□□□□ 0.05
LIG1-210ENST00000596332 STAC3Q96MF2 364 aa15.35■□□□□ 0.05
LIG1-210ENST00000596332 ASXL1Q8IXJ9 1541 aa15.34■□□□□ 0.05
LIG1-210ENST00000596332 CFAP70Q5T0N1 1121 aa15.34■□□□□ 0.05
LIG1-210ENST00000596332 PRAG1Q86YV5 1406 aa15.33■□□□□ 0.04
LIG1-210ENST00000596332 KCNA6P17658 529 aa15.31■□□□□ 0.04
LIG1-210ENST00000596332 DIP2AQ14689 1571 aa15.31■□□□□ 0.04
LIG1-210ENST00000596332 ADGRB1O14514 1584 aa15.3■□□□□ 0.04
LIG1-210ENST00000596332 NBPF1Q3BBV0 1214 aa15.3■□□□□ 0.04
LIG1-210ENST00000596332 TMEM132EQ6IEE7 984 aa15.3■□□□□ 0.04
LIG1-210ENST00000596332 PIK3R4Q99570 1358 aa15.3■□□□□ 0.04
LIG1-210ENST00000596332 CHD2O14647 1828 aaKnown RBP15.29■□□□□ 0.04
LIG1-210ENST00000596332 NWD1Q149M9 1564 aa15.29■□□□□ 0.04
LIG1-210ENST00000596332 BCANQ96GW7 911 aa15.29■□□□□ 0.04
LIG1-210ENST00000596332 TIMELESSQ9UNS1 1208 aa15.28■□□□□ 0.04
LIG1-210ENST00000596332 AMOTL2Q9Y2J4 779 aa15.28■□□□□ 0.04
LIG1-210ENST00000596332 XRN1Q8IZH2 1706 aaKnown RBP15.26■□□□□ 0.03
LIG1-210ENST00000596332 TONSLQ96HA7 1378 aa15.26■□□□□ 0.03
LIG1-210ENST00000596332 LRRC7Q96NW7 1537 aa15.26■□□□□ 0.03
LIG1-210ENST00000596332 LRPPRCP42704 1394 aaKnown RBP15.24■□□□□ 0.03
LIG1-210ENST00000596332 ABCC11Q96J66 1382 aa15.24■□□□□ 0.03
LIG1-210ENST00000596332 ROBO2Q9HCK4 1378 aa15.24■□□□□ 0.03
LIG1-210ENST00000596332 TECPR2O15040 1411 aa15.24■□□□□ 0.03
LIG1-210ENST00000596332 YTHDC2Q9H6S0 1430 aaKnown RBP15.24■□□□□ 0.03
LIG1-210ENST00000596332 RBM33Q96EV2 1170 aaKnown RBP15.23■□□□□ 0.03
LIG1-210ENST00000596332 TRPM1Q7Z4N2 1603 aa15.22■□□□□ 0.03
LIG1-210ENST00000596332 KIAA1210Q9ULL0 1709 aa15.22■□□□□ 0.03
LIG1-210ENST00000596332 GPRASP1Q5JY77 1395 aa15.22■□□□□ 0.03
LIG1-210ENST00000596332 CPS1P31327 1500 aa15.22■□□□□ 0.03
LIG1-210ENST00000596332 XIRP1Q702N8 1843 aaKnown RBP15.22■□□□□ 0.03
LIG1-210ENST00000596332 LAMC1P11047 1609 aa15.21■□□□□ 0.03
LIG1-210ENST00000596332 NKTRP30414 1462 aaKnown RBP15.21■□□□□ 0.03
LIG1-210ENST00000596332 CERKQ8TCT0 537 aa15.21■□□□□ 0.03
LIG1-210ENST00000596332 SIRT1Q96EB6 747 aa15.21■□□□□ 0.03
LIG1-210ENST00000596332 WAPLQ7Z5K2 1190 aa15.2■□□□□ 0.02
LIG1-210ENST00000596332 STK26Q9P289 416 aa15.2■□□□□ 0.02
LIG1-210ENST00000596332 TMEM94Q12767 1356 aa15.2■□□□□ 0.02
LIG1-210ENST00000596332 PLEKHH1Q9ULM0 1364 aa15.2■□□□□ 0.02
LIG1-210ENST00000596332 PTCH1Q13635 1447 aa15.19■□□□□ 0.02
LIG1-210ENST00000596332 PROSER2Q86WR7 435 aaPredicted RBP15.19■□□□□ 0.02
LIG1-210ENST00000596332 RALGAPBQ86X10 1494 aa15.17■□□□□ 0.02
LIG1-210ENST00000596332 DLC1Q96QB1 1528 aa15.17■□□□□ 0.02
LIG1-210ENST00000596332 TRAK1Q9UPV9 953 aa15.16■□□□□ 0.02
LIG1-210ENST00000596332 KNDC1Q76NI1 1749 aa15.16■□□□□ 0.02
LIG1-210ENST00000596332 FAM135BQ49AJ0 1406 aa15.16■□□□□ 0.02
LIG1-210ENST00000596332 NCOA3Q9Y6Q9 1424 aa15.16■□□□□ 0.02
LIG1-210ENST00000596332 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.14■□□□□ 0.01
LIG1-210ENST00000596332 IQSEC2Q5JU85 1478 aa15.14■□□□□ 0.01
LIG1-210ENST00000596332 PRAM1Q96QH2 718 aa15.13■□□□□ 0.01
LIG1-210ENST00000596332 ROCK2O75116 1388 aaKnown RBP15.12■□□□□ 0.01
LIG1-210ENST00000596332 C19orf44Q9H6X5 657 aa15.11■□□□□ 0.01
LIG1-210ENST00000596332 ARHGEF28Q8N1W1 1705 aaKnown RBP15.11■□□□□ 0.01
LIG1-210ENST00000596332 ADGRL3Q9HAR2 1447 aa15.1■□□□□ 0.01
LIG1-210ENST00000596332 NALCNQ8IZF0 1738 aa15.09■□□□□ 0.01
LIG1-210ENST00000596332 CARD11Q9BXL7 1154 aa15.09■□□□□ 0.01
LIG1-210ENST00000596332 SAFB2Q14151 953 aaKnown RBP eCLIP15.07■□□□□ 0
LIG1-210ENST00000596332 TESK2Q96S53 571 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms