RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 CARD11Q9BXL7 1154 aa18.62■□□□□ 0.57
VRK3-205ENST00000593919 KIAA1210Q9ULL0 1709 aa18.62■□□□□ 0.57
VRK3-205ENST00000593919 USP47Q96K76 1375 aa18.62■□□□□ 0.57
VRK3-205ENST00000593919 NRXN1Q9ULB1 1477 aa18.62■□□□□ 0.57
VRK3-205ENST00000593919 NBPF1Q3BBV0 1214 aa18.61■□□□□ 0.57
VRK3-205ENST00000593919 ADGRF5Q8IZF2 1346 aa18.61■□□□□ 0.57
VRK3-205ENST00000593919 GPRASP1Q5JY77 1395 aa18.61■□□□□ 0.57
VRK3-205ENST00000593919 RPGRIP1LQ68CZ1 1315 aa18.61■□□□□ 0.57
VRK3-205ENST00000593919 RIMS1Q86UR5 1692 aaKnown RBP18.6■□□□□ 0.57
VRK3-205ENST00000593919 TNRQ92752 1358 aa18.6■□□□□ 0.57
VRK3-205ENST00000593919 ADAMTSL3P82987 1691 aa18.59■□□□□ 0.57
VRK3-205ENST00000593919 CEBPAP49715 358 aaPredicted RBP18.59■□□□□ 0.57
VRK3-205ENST00000593919 CENPBP07199 599 aaPredicted RBP18.57■□□□□ 0.56
VRK3-205ENST00000593919 STAG3Q9UJ98 1225 aa18.57■□□□□ 0.56
VRK3-205ENST00000593919 A2ML1A8K2U0 1454 aa18.57■□□□□ 0.56
VRK3-205ENST00000593919 PIK3C2GO75747 1445 aa18.56■□□□□ 0.56
VRK3-205ENST00000593919 SCAF1Q9H7N4 1312 aaKnown RBP18.56■□□□□ 0.56
VRK3-205ENST00000593919 POLR1AO95602 1720 aaPredicted RBP18.56■□□□□ 0.56
VRK3-205ENST00000593919 KDM5AP29375 1690 aaKnown RBP18.56■□□□□ 0.56
VRK3-205ENST00000593919 UBR1Q8IWV7 1749 aa18.55■□□□□ 0.56
VRK3-205ENST00000593919 IQGAP1P46940 1657 aa18.55■□□□□ 0.56
VRK3-205ENST00000593919 NUTM2DQ5VT03 806 aaPredicted RBP18.54■□□□□ 0.56
VRK3-205ENST00000593919 ZFYVE9O95405 1425 aa18.53■□□□□ 0.56
VRK3-205ENST00000593919 VGFO15240 615 aaPredicted RBP18.53■□□□□ 0.56
VRK3-205ENST00000593919 PLPPR3Q6T4P5 718 aa18.53■□□□□ 0.56
VRK3-205ENST00000593919 YTHDC1Q96MU7 727 aaKnown RBP18.53■□□□□ 0.56
VRK3-205ENST00000593919 CFAP70Q5T0N1 1121 aa18.52■□□□□ 0.56
VRK3-205ENST00000593919 NLRP1Q9C000 1473 aa18.52■□□□□ 0.56
VRK3-205ENST00000593919 ST20-MTHFSA0A0A6YYL1 179 aa18.5■□□□□ 0.55
VRK3-205ENST00000593919 SETBP1Q9Y6X0 1596 aa18.5■□□□□ 0.55
VRK3-205ENST00000593919 WASHC2AQ641Q2 1341 aa18.49■□□□□ 0.55
VRK3-205ENST00000593919 MYO3AQ8NEV4 1616 aa18.49■□□□□ 0.55
VRK3-205ENST00000593919 RIMS2Q9UQ26 1411 aa18.48■□□□□ 0.55
VRK3-205ENST00000593919 C11orf95C9JLR9 678 aaPredicted RBP18.48■□□□□ 0.55
VRK3-205ENST00000593919 SCAF11Q99590 1463 aaKnown RBP18.48■□□□□ 0.55
VRK3-205ENST00000593919 C14orf93Q9H972 538 aaKnown RBP18.48■□□□□ 0.55
VRK3-205ENST00000593919 DDX10Q13206 875 aaKnown RBP18.47■□□□□ 0.55
VRK3-205ENST00000593919 ADGRB1O14514 1584 aa18.47■□□□□ 0.55
VRK3-205ENST00000593919 CCDC7Q96M83 1385 aa18.46■□□□□ 0.54
VRK3-205ENST00000593919 PHF23Q9BUL5 403 aaPredicted RBP18.45■□□□□ 0.54
VRK3-205ENST00000593919 SETD1BQ9UPS6 1966 aaKnown RBP18.45■□□□□ 0.54
VRK3-205ENST00000593919 KIF7Q2M1P5 1343 aa18.44■□□□□ 0.54
VRK3-205ENST00000593919 SENP3Q9H4L4 574 aaPredicted RBP18.43■□□□□ 0.54
VRK3-205ENST00000593919 TMEM2Q9UHN6 1383 aa18.43■□□□□ 0.54
VRK3-205ENST00000593919 ALKQ9UM73 1620 aa18.42■□□□□ 0.54
VRK3-205ENST00000593919 CEP170BQ9Y4F5 1589 aaPredicted RBP18.42■□□□□ 0.54
VRK3-205ENST00000593919 ASXL1Q8IXJ9 1541 aa18.42■□□□□ 0.54
VRK3-205ENST00000593919 SETD1AO15047 1707 aaKnown RBP18.41■□□□□ 0.54
VRK3-205ENST00000593919 EIF3AQ14152 1382 aaKnown RBP18.41■□□□□ 0.54
VRK3-205ENST00000593919 NRXN3Q9Y4C0 1643 aa18.41■□□□□ 0.54
VRK3-205ENST00000593919 TMEM132EQ6IEE7 984 aa18.41■□□□□ 0.54
VRK3-205ENST00000593919 TESK2Q96S53 571 aa18.41■□□□□ 0.54
VRK3-205ENST00000593919 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.4■□□□□ 0.54
VRK3-205ENST00000593919 ZNF142P52746 1687 aaPredicted RBP18.4■□□□□ 0.54
VRK3-205ENST00000593919 PTPRMP28827 1452 aa18.39■□□□□ 0.53
VRK3-205ENST00000593919 SLIT1O75093 1534 aa18.38■□□□□ 0.53
VRK3-205ENST00000593919 ARHGEF28Q8N1W1 1705 aaKnown RBP18.38■□□□□ 0.53
VRK3-205ENST00000593919 ARHGAP23Q9P227 1491 aa18.37■□□□□ 0.53
VRK3-205ENST00000593919 HDGFP51858 240 aaKnown RBP18.37■□□□□ 0.53
VRK3-205ENST00000593919 DISP3Q9P2K9 1392 aa18.35■□□□□ 0.53
VRK3-205ENST00000593919 PELP1Q8IZL8 1130 aaKnown RBP18.35■□□□□ 0.53
VRK3-205ENST00000593919 TRAK1Q9UPV9 953 aa18.35■□□□□ 0.53
VRK3-205ENST00000593919 QRICH2Q9H0J4 1663 aa18.35■□□□□ 0.53
VRK3-205ENST00000593919 POLR3GLQ9BT43 218 aa18.35■□□□□ 0.53
VRK3-205ENST00000593919 LTKP29376 864 aa18.34■□□□□ 0.53
VRK3-205ENST00000593919 THEMISQ8N1K5 641 aaPredicted RBP18.34■□□□□ 0.53
VRK3-205ENST00000593919 GTF3C3Q9Y5Q9 886 aa18.33■□□□□ 0.52
VRK3-205ENST00000593919 TMF1P82094 1093 aa18.32■□□□□ 0.52
VRK3-205ENST00000593919 YTHDC2Q9H6S0 1430 aaKnown RBP18.32■□□□□ 0.52
VRK3-205ENST00000593919 TXNDC2Q86VQ3 553 aa18.31■□□□□ 0.52
VRK3-205ENST00000593919 PLEKHG1Q9ULL1 1385 aa18.31■□□□□ 0.52
VRK3-205ENST00000593919 EID1Q9Y6B2 187 aa18.31■□□□□ 0.52
VRK3-205ENST00000593919 CENPJQ9HC77 1338 aaPredicted RBP18.31■□□□□ 0.52
VRK3-205ENST00000593919 SBNO2Q9Y2G9 1366 aa18.3■□□□□ 0.52
VRK3-205ENST00000593919 STK26Q9P289 416 aa18.29■□□□□ 0.52
VRK3-205ENST00000593919 ADAMTS13Q76LX8 1427 aa18.29■□□□□ 0.52
VRK3-205ENST00000593919 BCANQ96GW7 911 aa18.28■□□□□ 0.52
VRK3-205ENST00000593919 METP08581 1390 aa18.28■□□□□ 0.52
VRK3-205ENST00000593919 LRPPRCP42704 1394 aaKnown RBP18.25■□□□□ 0.51
VRK3-205ENST00000593919 KNDC1Q76NI1 1749 aa18.25■□□□□ 0.51
VRK3-205ENST00000593919 RTN4Q9NQC3 1192 aaKnown RBP18.25■□□□□ 0.51
VRK3-205ENST00000593919 DLC1Q96QB1 1528 aa18.24■□□□□ 0.51
VRK3-205ENST00000593919 MED14O60244 1454 aa18.24■□□□□ 0.51
VRK3-205ENST00000593919 MYOM1P52179 1685 aa18.24■□□□□ 0.51
VRK3-205ENST00000593919 CDCA8Q53HL2 280 aa18.23■□□□□ 0.51
VRK3-205ENST00000593919 KDM4FA0A1W2PPD8 638 aa18.22■□□□□ 0.51
VRK3-205ENST00000593919 DIP2AQ14689 1571 aa18.22■□□□□ 0.51
VRK3-205ENST00000593919 ABCC11Q96J66 1382 aa18.22■□□□□ 0.51
VRK3-205ENST00000593919 ANP32CO43423 234 aa18.22■□□□□ 0.51
VRK3-205ENST00000593919 SAFB2Q14151 953 aaKnown RBP eCLIP18.22■□□□□ 0.51
VRK3-205ENST00000593919 PRAM1Q96QH2 718 aa18.21■□□□□ 0.51
VRK3-205ENST00000593919 TULP4Q9NRJ4 1543 aa18.21■□□□□ 0.5
VRK3-205ENST00000593919 SLC26A8Q96RN1 970 aa18.21■□□□□ 0.5
VRK3-205ENST00000593919 CPS1P31327 1500 aa18.2■□□□□ 0.5
VRK3-205ENST00000593919 TECPR2O15040 1411 aa18.19■□□□□ 0.5
VRK3-205ENST00000593919 ANKLE2Q86XL3 938 aa18.19■□□□□ 0.5
VRK3-205ENST00000593919 POGKQ9P215 609 aa18.19■□□□□ 0.5
VRK3-205ENST00000593919 TBX22Q9Y458 520 aa18.17■□□□□ 0.5
VRK3-205ENST00000593919 PLEKHH1Q9ULM0 1364 aa18.17■□□□□ 0.5
VRK3-205ENST00000593919 PTPRUQ92729 1446 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms