RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 TMEM134Q9H6X4 195 aa10.83□□□□□ -0.68
SMAD4-216ENST00000593223 SLC4A3P48751 1232 aa10.82□□□□□ -0.68
SMAD4-216ENST00000593223 SWT1Q5T5J6 900 aaKnown RBP10.82□□□□□ -0.68
SMAD4-216ENST00000593223 ANKK1Q8NFD2 765 aa10.82□□□□□ -0.68
SMAD4-216ENST00000593223 GPCPD1Q9NPB8 672 aa10.82□□□□□ -0.68
SMAD4-216ENST00000593223 RNF40O75150 1001 aa10.81□□□□□ -0.68
SMAD4-216ENST00000593223 SAMD7Q7Z3H4 446 aa10.81□□□□□ -0.68
SMAD4-216ENST00000593223 WNT2BQ93097 391 aa10.81□□□□□ -0.68
SMAD4-216ENST00000593223 DAXXQ9UER7 740 aaPredicted RBP10.8□□□□□ -0.68
SMAD4-216ENST00000593223 PARP9Q8IXQ6 854 aa10.79□□□□□ -0.68
SMAD4-216ENST00000593223 LRCH3Q96II8 777 aa10.79□□□□□ -0.68
SMAD4-216ENST00000593223 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.79□□□□□ -0.68
SMAD4-216ENST00000593223 GIGYF2Q6Y7W6 1299 aaKnown RBP10.78□□□□□ -0.68
SMAD4-216ENST00000593223 GPBP1L1Q9HC44 474 aaPredicted RBP10.78□□□□□ -0.68
SMAD4-216ENST00000593223 DDX11L8A8MPP1 907 aa10.77□□□□□ -0.69
SMAD4-216ENST00000593223 BRPF1P55201 1214 aaPredicted RBP10.77□□□□□ -0.69
SMAD4-216ENST00000593223 RSPH4AQ5TD94 716 aa10.77□□□□□ -0.69
SMAD4-216ENST00000593223 SLF2Q8IX21 1173 aa10.77□□□□□ -0.69
SMAD4-216ENST00000593223 KCTD12Q96CX2 325 aaKnown RBP10.77□□□□□ -0.69
SMAD4-216ENST00000593223 REPIN1Q9BWE0 567 aaKnown RBP10.77□□□□□ -0.69
SMAD4-216ENST00000593223 SULF1Q8IWU6 871 aa10.76□□□□□ -0.69
SMAD4-216ENST00000593223 RDH13Q8NBN7 331 aa10.75□□□□□ -0.69
SMAD4-216ENST00000593223 KDM4CQ9H3R0 1056 aa10.75□□□□□ -0.69
SMAD4-216ENST00000593223 SSTR3P32745 418 aaPredicted RBP10.74□□□□□ -0.69
SMAD4-216ENST00000593223 BCAMP50895 628 aa10.74□□□□□ -0.69
SMAD4-216ENST00000593223 TMUB1Q9BVT8 246 aa10.74□□□□□ -0.69
SMAD4-216ENST00000593223 FAM217BQ9NTX9 383 aaPredicted RBP10.74□□□□□ -0.69
SMAD4-216ENST00000593223 SOWAHBA6NEL2 793 aa10.73□□□□□ -0.69
SMAD4-216ENST00000593223 HPS5Q9UPZ3 1129 aa10.72□□□□□ -0.69
SMAD4-216ENST00000593223 PPP4CP60510 307 aa10.71□□□□□ -0.69
SMAD4-216ENST00000593223 NECTIN2Q92692 538 aa10.71□□□□□ -0.69
SMAD4-216ENST00000593223 THSD4Q6ZMP0 1018 aa10.7□□□□□ -0.7
SMAD4-216ENST00000593223 MS4A1P11836 297 aa10.69□□□□□ -0.7
SMAD4-216ENST00000593223 TSR3Q9UJK0 312 aaKnown RBP10.69□□□□□ -0.7
SMAD4-216ENST00000593223 PTPN5P54829 565 aa10.68□□□□□ -0.7
SMAD4-216ENST00000593223 BEGAINQ9BUH8 593 aa10.68□□□□□ -0.7
SMAD4-216ENST00000593223 SLC10A3P09131 477 aa10.67□□□□□ -0.7
SMAD4-216ENST00000593223 CD46P15529 392 aa10.67□□□□□ -0.7
SMAD4-216ENST00000593223 CFHP08603 1231 aa10.66□□□□□ -0.7
SMAD4-216ENST00000593223 KMT5BQ4FZB7 885 aa10.65□□□□□ -0.7
SMAD4-216ENST00000593223 IL27Q8NEV9 243 aa10.65□□□□□ -0.7
SMAD4-216ENST00000593223 DDRGK1Q96HY6 314 aa10.65□□□□□ -0.7
SMAD4-216ENST00000593223 FAM117AQ9C073 453 aa10.65□□□□□ -0.7
SMAD4-216ENST00000593223 WBP1LQ9NX94 342 aa10.65□□□□□ -0.7
SMAD4-216ENST00000593223 NUTM1Q86Y26 1132 aa10.64□□□□□ -0.71
SMAD4-216ENST00000593223 GCGRP47871 477 aa10.63□□□□□ -0.71
SMAD4-216ENST00000593223 PRR14Q9BWN1 585 aa10.63□□□□□ -0.71
SMAD4-216ENST00000593223 KDM4AO75164 1064 aa10.6□□□□□ -0.71
SMAD4-216ENST00000593223 DIXDC1Q155Q3 683 aa10.59□□□□□ -0.71
SMAD4-216ENST00000593223 NYAP1Q6ZVC0 841 aa10.59□□□□□ -0.71
SMAD4-216ENST00000593223 HCSTQ9UBK5 93 aa10.59□□□□□ -0.71
SMAD4-216ENST00000593223 APLP1P51693 650 aa10.58□□□□□ -0.72
SMAD4-216ENST00000593223 PLA2G2EQ9NZK7 142 aa10.58□□□□□ -0.72
SMAD4-216ENST00000593223 ATP1B4Q9UN42 357 aaPredicted RBP10.58□□□□□ -0.72
SMAD4-216ENST00000593223 GRIPAP1Q4V328 841 aa10.57□□□□□ -0.72
SMAD4-216ENST00000593223 SPIRE2Q8WWL2 714 aa10.57□□□□□ -0.72
SMAD4-216ENST00000593223 TBC1D2Q9BYX2 928 aa10.57□□□□□ -0.72
SMAD4-216ENST00000593223 RSPH6AQ9H0K4 717 aa10.57□□□□□ -0.72
SMAD4-216ENST00000593223 PLEKHG3A1L390 1219 aa10.56□□□□□ -0.72
SMAD4-216ENST00000593223 ACTN4O43707 911 aaKnown RBP10.56□□□□□ -0.72
SMAD4-216ENST00000593223 USP46P62068 366 aa10.56□□□□□ -0.72
SMAD4-216ENST00000593223 FUT2Q10981 343 aa10.56□□□□□ -0.72
SMAD4-216ENST00000593223 PCDHB3Q9Y5E6 796 aa10.55□□□□□ -0.72
SMAD4-216ENST00000593223 ATP6V1AP38606 617 aa10.54□□□□□ -0.72
SMAD4-216ENST00000593223 PUS10Q3MIT2 529 aaKnown RBP10.53□□□□□ -0.72
SMAD4-216ENST00000593223 HOXA2O43364 376 aa10.52□□□□□ -0.73
SMAD4-216ENST00000593223 MOXD2PA6NHM9 499 aa10.51□□□□□ -0.73
SMAD4-216ENST00000593223 MYSM1Q5VVJ2 828 aa10.51□□□□□ -0.73
SMAD4-216ENST00000593223 POLR3EQ9NVU0 708 aa10.51□□□□□ -0.73
SMAD4-216ENST00000593223 NDUFV2P19404 249 aa10.5□□□□□ -0.73
SMAD4-216ENST00000593223 COPS2P61201 443 aa10.5□□□□□ -0.73
SMAD4-216ENST00000593223 TMEM132AQ24JP5 1023 aa10.5□□□□□ -0.73
SMAD4-216ENST00000593223 SH3D19Q5HYK7 790 aa10.49□□□□□ -0.73
SMAD4-216ENST00000593223 BLOC1S3Q6QNY0 202 aa10.49□□□□□ -0.73
SMAD4-216ENST00000593223 RIC3Q7Z5B4 369 aa10.49□□□□□ -0.73
SMAD4-216ENST00000593223 HLA-CQ95604 372 aa10.49□□□□□ -0.73
SMAD4-216ENST00000593223 NR1I2O75469 434 aa10.48□□□□□ -0.73
SMAD4-216ENST00000593223 FDX1P10109 184 aa10.48□□□□□ -0.73
SMAD4-216ENST00000593223 CLK2P49760 499 aaKnown RBP10.48□□□□□ -0.73
SMAD4-216ENST00000593223 GUCA2AQ02747 115 aa10.48□□□□□ -0.73
SMAD4-216ENST00000593223 SKIV2LQ15477 1246 aaKnown RBP10.48□□□□□ -0.73
SMAD4-216ENST00000593223 PCMTD1Q96MG8 357 aaPredicted RBP10.48□□□□□ -0.73
SMAD4-216ENST00000593223 CSPP1Q1MSJ5 1256 aa10.47□□□□□ -0.73
SMAD4-216ENST00000593223 MORN1Q5T089 497 aa10.47□□□□□ -0.73
SMAD4-216ENST00000593223 RSBN1LQ6PCB5 846 aaPredicted RBP10.47□□□□□ -0.73
SMAD4-216ENST00000593223 MTRQ99707 1265 aa10.47□□□□□ -0.73
SMAD4-216ENST00000593223 SLC27A5Q9Y2P5 690 aa10.46□□□□□ -0.73
SMAD4-216ENST00000593223 SPTLC1O15269 473 aa10.45□□□□□ -0.74
SMAD4-216ENST00000593223 SCUBE3Q8IX30 993 aa10.45□□□□□ -0.74
SMAD4-216ENST00000593223 Q3C1V9 767 aa10.44□□□□□ -0.74
SMAD4-216ENST00000593223 IL21Q9HBE4 155 aa10.44□□□□□ -0.74
SMAD4-216ENST00000593223 GOPCQ9HD26 462 aa10.44□□□□□ -0.74
SMAD4-216ENST00000593223 LIMD1Q9UGP4 676 aa10.44□□□□□ -0.74
SMAD4-216ENST00000593223 GJA5P36382 358 aa10.43□□□□□ -0.74
SMAD4-216ENST00000593223 C6orf229H3BNL8 230 aa10.42□□□□□ -0.74
SMAD4-216ENST00000593223 TJAP1Q5JTD0 557 aa10.42□□□□□ -0.74
SMAD4-216ENST00000593223 PROCA1Q8NCQ7 364 aaPredicted RBP10.42□□□□□ -0.74
SMAD4-216ENST00000593223 PCDHB15Q9Y5E8 787 aa10.42□□□□□ -0.74
SMAD4-216ENST00000593223 NUTM2BA6NNL0 878 aaPredicted RBP10.41□□□□□ -0.74
SMAD4-216ENST00000593223 NUTM2EB1AL46 878 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms