RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 MYBBP1AQ9BQG0 1328 aaKnown RBP26.82■■□□□ 1.88
CLIP3-206ENST00000593074 BRD4O60885 1362 aaPredicted RBP26.81■■□□□ 1.88
CLIP3-206ENST00000593074 PARD3Q8TEW0 1356 aa26.8■■□□□ 1.88
CLIP3-206ENST00000593074 PER1O15534 1290 aaPredicted RBP26.8■■□□□ 1.88
CLIP3-206ENST00000593074 CNGB1Q14028 1251 aaPredicted RBP26.8■■□□□ 1.88
CLIP3-206ENST00000593074 NRXN1Q9ULB1 1477 aa26.8■■□□□ 1.88
CLIP3-206ENST00000593074 ZMYM4Q5VZL5 1548 aa26.77■■□□□ 1.88
CLIP3-206ENST00000593074 CAMSAP1Q5T5Y3 1602 aa26.77■■□□□ 1.88
CLIP3-206ENST00000593074 PNISRQ8TF01 805 aaKnown RBP26.77■■□□□ 1.88
CLIP3-206ENST00000593074 CHGAP10645 457 aaKnown RBP26.75■■□□□ 1.87
CLIP3-206ENST00000593074 TMC1Q8TDI8 760 aa26.75■■□□□ 1.87
CLIP3-206ENST00000593074 LRPPRCP42704 1394 aaKnown RBP26.75■■□□□ 1.87
CLIP3-206ENST00000593074 EIF3AQ14152 1382 aaKnown RBP26.75■■□□□ 1.87
CLIP3-206ENST00000593074 TSPOAP1O95153 1857 aa26.74■■□□□ 1.87
CLIP3-206ENST00000593074 ADGRF5Q8IZF2 1346 aa26.73■■□□□ 1.87
CLIP3-206ENST00000593074 ZC3H13Q5T200 1668 aaKnown RBP26.72■■□□□ 1.87
CLIP3-206ENST00000593074 NOS1P29475 1434 aa26.71■■□□□ 1.87
CLIP3-206ENST00000593074 ARHGAP31Q2M1Z3 1444 aa26.71■■□□□ 1.87
CLIP3-206ENST00000593074 SYNMO15061 1565 aa26.71■■□□□ 1.87
CLIP3-206ENST00000593074 BCANQ96GW7 911 aa26.71■■□□□ 1.87
CLIP3-206ENST00000593074 PPLO60437 1756 aa26.69■■□□□ 1.86
CLIP3-206ENST00000593074 CFAP70Q5T0N1 1121 aa26.69■■□□□ 1.86
CLIP3-206ENST00000593074 NLRP13Q86W25 1043 aa26.69■■□□□ 1.86
CLIP3-206ENST00000593074 PANK3Q9H999 370 aa26.69■■□□□ 1.86
CLIP3-206ENST00000593074 CFAP65Q6ZU64 1925 aaKnown RBP26.69■■□□□ 1.86
CLIP3-206ENST00000593074 SIGLEC1Q9BZZ2 1709 aa26.68■■□□□ 1.86
CLIP3-206ENST00000593074 PIK3C2BO00750 1634 aa26.68■■□□□ 1.86
CLIP3-206ENST00000593074 RPGRIP1LQ68CZ1 1315 aa26.68■■□□□ 1.86
CLIP3-206ENST00000593074 SETBP1Q9Y6X0 1596 aa26.67■■□□□ 1.86
CLIP3-206ENST00000593074 CDCA8Q53HL2 280 aa26.67■■□□□ 1.86
CLIP3-206ENST00000593074 MYO3AQ8NEV4 1616 aa26.66■■□□□ 1.86
CLIP3-206ENST00000593074 MYOM1P52179 1685 aa26.66■■□□□ 1.86
CLIP3-206ENST00000593074 SMG6Q86US8 1419 aaKnown RBP26.64■■□□□ 1.85
CLIP3-206ENST00000593074 KDM5AP29375 1690 aaKnown RBP26.63■■□□□ 1.85
CLIP3-206ENST00000593074 PIK3C2GO75747 1445 aa26.63■■□□□ 1.85
CLIP3-206ENST00000593074 SLC52A1Q9NWF4 448 aa26.6■■□□□ 1.85
CLIP3-206ENST00000593074 PPP6R1Q9UPN7 881 aa26.59■■□□□ 1.85
CLIP3-206ENST00000593074 REREQ9P2R6 1566 aa26.59■■□□□ 1.85
CLIP3-206ENST00000593074 SLC24A1O60721 1099 aa26.59■■□□□ 1.85
CLIP3-206ENST00000593074 SBNO2Q9Y2G9 1366 aa26.58■■□□□ 1.85
CLIP3-206ENST00000593074 IDI1Q13907 227 aa26.58■■□□□ 1.84
CLIP3-206ENST00000593074 AGLP35573 1532 aa26.58■■□□□ 1.84
CLIP3-206ENST00000593074 ERVK-7P63135 1459 aa26.57■■□□□ 1.84
CLIP3-206ENST00000593074 KIF13AQ9H1H9 1805 aa26.57■■□□□ 1.84
CLIP3-206ENST00000593074 CC2D1BQ5T0F9 858 aaKnown RBP26.57■■□□□ 1.84
CLIP3-206ENST00000593074 ERICH6BQ5W0A0 696 aa26.57■■□□□ 1.84
CLIP3-206ENST00000593074 C14orf93Q9H972 538 aaKnown RBP26.56■■□□□ 1.84
CLIP3-206ENST00000593074 ADGRB1O14514 1584 aa26.56■■□□□ 1.84
CLIP3-206ENST00000593074 INSRP06213 1382 aa26.55■■□□□ 1.84
CLIP3-206ENST00000593074 VGFO15240 615 aaPredicted RBP26.54■■□□□ 1.84
CLIP3-206ENST00000593074 NUDCQ9Y266 331 aa26.53■■□□□ 1.84
CLIP3-206ENST00000593074 NEXMIFQ5QGS0 1516 aa26.53■■□□□ 1.84
CLIP3-206ENST00000593074 ASXL1Q8IXJ9 1541 aa26.52■■□□□ 1.84
CLIP3-206ENST00000593074 KNSTRNQ9Y448 316 aa26.51■■□□□ 1.83
CLIP3-206ENST00000593074 NPC1L1Q9UHC9 1359 aa26.51■■□□□ 1.83
CLIP3-206ENST00000593074 AMER1Q5JTC6 1135 aaPredicted RBP26.5■■□□□ 1.83
CLIP3-206ENST00000593074 PREX1Q8TCU6 1659 aa26.5■■□□□ 1.83
CLIP3-206ENST00000593074 IRX6P78412 446 aaPredicted RBP26.48■■□□□ 1.83
CLIP3-206ENST00000593074 FBXO31Q5XUX0 539 aaPredicted RBP26.48■■□□□ 1.83
CLIP3-206ENST00000593074 BLMP54132 1417 aaPredicted RBP26.47■■□□□ 1.83
CLIP3-206ENST00000593074 TSHZ2Q9NRE2 1034 aa26.46■■□□□ 1.83
CLIP3-206ENST00000593074 QRICH2Q9H0J4 1663 aa26.46■■□□□ 1.83
CLIP3-206ENST00000593074 NUTM2DQ5VT03 806 aaPredicted RBP26.45■■□□□ 1.83
CLIP3-206ENST00000593074 CENPJQ9HC77 1338 aaPredicted RBP26.45■■□□□ 1.82
CLIP3-206ENST00000593074 TRAK1Q9UPV9 953 aa26.43■■□□□ 1.82
CLIP3-206ENST00000593074 ARHGEF40Q8TER5 1519 aa26.43■■□□□ 1.82
CLIP3-206ENST00000593074 RNF123Q5XPI4 1314 aa26.43■■□□□ 1.82
CLIP3-206ENST00000593074 ZFYVE9O95405 1425 aa26.43■■□□□ 1.82
CLIP3-206ENST00000593074 MLECQ14165 292 aa26.43■■□□□ 1.82
CLIP3-206ENST00000593074 TMEM132EQ6IEE7 984 aa26.43■■□□□ 1.82
CLIP3-206ENST00000593074 TMEM131LA2VDJ0 1609 aa26.42■■□□□ 1.82
CLIP3-206ENST00000593074 PPP2R1AP30153 589 aa26.39■■□□□ 1.82
CLIP3-206ENST00000593074 ARHGEF28Q8N1W1 1705 aaKnown RBP26.38■■□□□ 1.81
CLIP3-206ENST00000593074 MYO5BQ9ULV0 1848 aa26.38■■□□□ 1.81
CLIP3-206ENST00000593074 PPP4R2Q9NY27 417 aa26.38■■□□□ 1.81
CLIP3-206ENST00000593074 CLTCQ00610 1675 aaKnown RBP26.37■■□□□ 1.81
CLIP3-206ENST00000593074 STAG3Q9UJ98 1225 aa26.37■■□□□ 1.81
CLIP3-206ENST00000593074 SENP3-EIF4A1A0A087X0R7 540 aa26.36■■□□□ 1.81
CLIP3-206ENST00000593074 ESF1Q9H501 851 aaKnown RBP26.35■■□□□ 1.81
CLIP3-206ENST00000593074 PDE3BQ13370 1112 aa26.34■■□□□ 1.81
CLIP3-206ENST00000593074 CARD14Q9BXL6 1004 aa26.31■■□□□ 1.8
CLIP3-206ENST00000593074 SPATA31D1Q6ZQQ2 1576 aa26.3■■□□□ 1.8
CLIP3-206ENST00000593074 ZMYM3Q14202 1370 aa26.27■■□□□ 1.8
CLIP3-206ENST00000593074 TULP4Q9NRJ4 1543 aa26.27■■□□□ 1.8
CLIP3-206ENST00000593074 USP32Q8NFA0 1604 aa26.27■■□□□ 1.8
CLIP3-206ENST00000593074 PUS7Q96PZ0 661 aaKnown RBP26.26■■□□□ 1.79
CLIP3-206ENST00000593074 ADAMTS8Q9UP79 889 aa26.26■■□□□ 1.79
CLIP3-206ENST00000593074 A2ML1A8K2U0 1454 aa26.23■■□□□ 1.79
CLIP3-206ENST00000593074 SENP3Q9H4L4 574 aaPredicted RBP26.23■■□□□ 1.79
CLIP3-206ENST00000593074 WDR43Q15061 677 aaKnown RBP eCLIP26.23■■□□□ 1.79
CLIP3-206ENST00000593074 EVC2Q86UK5 1308 aa26.22■■□□□ 1.79
CLIP3-206ENST00000593074 NSD3Q9BZ95 1437 aa26.22■■□□□ 1.79
CLIP3-206ENST00000593074 STK26Q9P289 416 aa26.22■■□□□ 1.79
CLIP3-206ENST00000593074 SALL2Q9Y467 1007 aaPredicted RBP26.21■■□□□ 1.79
CLIP3-206ENST00000593074 PTPRMP28827 1452 aa26.19■■□□□ 1.78
CLIP3-206ENST00000593074 RIMS2Q9UQ26 1411 aa26.17■■□□□ 1.78
CLIP3-206ENST00000593074 SLC12A5Q9H2X9 1139 aa26.17■■□□□ 1.78
CLIP3-206ENST00000593074 ALKQ9UM73 1620 aa26.17■■□□□ 1.78
CLIP3-206ENST00000593074 RCAN3Q9UKA8 241 aa26.16■■□□□ 1.78
CLIP3-206ENST00000593074 YTHDC2Q9H6S0 1430 aaKnown RBP26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms