RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 JCADQ9P266 1359 aa13.79□□□□□ -0.2
SMAD4-215ENST00000592911 FGD6Q6ZV73 1430 aa13.79□□□□□ -0.2
SMAD4-215ENST00000592911 RPRD2Q5VT52 1461 aaKnown RBP13.79□□□□□ -0.2
SMAD4-215ENST00000592911 ADGRB3O60242 1522 aa13.79□□□□□ -0.2
SMAD4-215ENST00000592911 SLC52A1Q9NWF4 448 aa13.78□□□□□ -0.2
SMAD4-215ENST00000592911 STAG3Q9UJ98 1225 aa13.78□□□□□ -0.2
SMAD4-215ENST00000592911 MSH6P52701 1360 aa13.78□□□□□ -0.2
SMAD4-215ENST00000592911 NOS1P29475 1434 aa13.78□□□□□ -0.2
SMAD4-215ENST00000592911 PHLPP1O60346 1717 aa13.78□□□□□ -0.2
SMAD4-215ENST00000592911 CHD2O14647 1828 aaKnown RBP13.78□□□□□ -0.2
SMAD4-215ENST00000592911 POTEAQ6S8J7 498 aa13.77□□□□□ -0.21
SMAD4-215ENST00000592911 SPATA31A6Q5VVP1 1343 aa13.75□□□□□ -0.21
SMAD4-215ENST00000592911 HDGFP51858 240 aaKnown RBP13.75□□□□□ -0.21
SMAD4-215ENST00000592911 ABCC5O15440 1437 aa13.74□□□□□ -0.21
SMAD4-215ENST00000592911 PROSER2Q86WR7 435 aaPredicted RBP13.74□□□□□ -0.21
SMAD4-215ENST00000592911 PTPN23Q9H3S7 1636 aa13.74□□□□□ -0.21
SMAD4-215ENST00000592911 ANKRD30AQ9BXX3 1397 aa13.73□□□□□ -0.21
SMAD4-215ENST00000592911 COL16A1Q07092 1604 aaPredicted RBP13.73□□□□□ -0.21
SMAD4-215ENST00000592911 IDI1Q13907 227 aa13.73□□□□□ -0.21
SMAD4-215ENST00000592911 DIP2AQ14689 1571 aa13.73□□□□□ -0.21
SMAD4-215ENST00000592911 DAPK1P53355 1430 aa13.73□□□□□ -0.21
SMAD4-215ENST00000592911 SHPRHQ149N8 1683 aa13.72□□□□□ -0.21
SMAD4-215ENST00000592911 PLEKHG1Q9ULL1 1385 aa13.72□□□□□ -0.21
SMAD4-215ENST00000592911 ZNF772Q68DY9 489 aaPredicted RBP13.72□□□□□ -0.21
SMAD4-215ENST00000592911 SLAIN2Q9P270 581 aa13.72□□□□□ -0.21
SMAD4-215ENST00000592911 AHDC1Q5TGY3 1603 aaPredicted RBP13.72□□□□□ -0.21
SMAD4-215ENST00000592911 PIK3R4Q99570 1358 aa13.71□□□□□ -0.21
SMAD4-215ENST00000592911 CDK12Q9NYV4 1490 aaPredicted RBP13.71□□□□□ -0.21
SMAD4-215ENST00000592911 ZFYVE9O95405 1425 aa13.71□□□□□ -0.22
SMAD4-215ENST00000592911 ADGRL2O95490 1459 aa13.69□□□□□ -0.22
SMAD4-215ENST00000592911 SETD1AO15047 1707 aaKnown RBP13.69□□□□□ -0.22
SMAD4-215ENST00000592911 TBX22Q9Y458 520 aa13.68□□□□□ -0.22
SMAD4-215ENST00000592911 MYO5BQ9ULV0 1848 aa13.67□□□□□ -0.22
SMAD4-215ENST00000592911 DCCP43146 1447 aa13.67□□□□□ -0.22
SMAD4-215ENST00000592911 GCC2Q8IWJ2 1684 aa13.67□□□□□ -0.22
SMAD4-215ENST00000592911 CADPS2Q86UW7 1296 aa13.67□□□□□ -0.22
SMAD4-215ENST00000592911 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.67□□□□□ -0.22
SMAD4-215ENST00000592911 SLC26A8Q96RN1 970 aa13.67□□□□□ -0.22
SMAD4-215ENST00000592911 RRP7BPQ9NSQ0 103 aa13.67□□□□□ -0.22
SMAD4-215ENST00000592911 TMEM131LA2VDJ0 1609 aa13.66□□□□□ -0.22
SMAD4-215ENST00000592911 U3KPZ7 1027 aaPredicted RBP13.66□□□□□ -0.22
SMAD4-215ENST00000592911 KANK4Q5T7N3 995 aaPredicted RBP13.65□□□□□ -0.22
SMAD4-215ENST00000592911 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.64□□□□□ -0.23
SMAD4-215ENST00000592911 C19orf44Q9H6X5 657 aa13.64□□□□□ -0.23
SMAD4-215ENST00000592911 RIMS2Q9UQ26 1411 aa13.64□□□□□ -0.23
SMAD4-215ENST00000592911 UPF1Q92900 1129 aaKnown RBP eCLIP13.63□□□□□ -0.23
SMAD4-215ENST00000592911 RNF39Q9H2S5 420 aa13.63□□□□□ -0.23
SMAD4-215ENST00000592911 LRP6O75581 1613 aa13.62□□□□□ -0.23
SMAD4-215ENST00000592911 TRPM2O94759 1503 aa13.61□□□□□ -0.23
SMAD4-215ENST00000592911 PPP1R15AO75807 674 aaPredicted RBP13.61□□□□□ -0.23
SMAD4-215ENST00000592911 ANKRD50Q9ULJ7 1429 aa13.61□□□□□ -0.23
SMAD4-215ENST00000592911 UNC13BO14795 1591 aa13.6□□□□□ -0.23
SMAD4-215ENST00000592911 ATF3P18847 181 aa13.6□□□□□ -0.23
SMAD4-215ENST00000592911 APLP2Q06481 763 aa13.6□□□□□ -0.23
SMAD4-215ENST00000592911 MEX3CQ5U5Q3 659 aaKnown RBP13.6□□□□□ -0.23
SMAD4-215ENST00000592911 ADAMTS13Q76LX8 1427 aa13.6□□□□□ -0.23
SMAD4-215ENST00000592911 BCANQ96GW7 911 aa13.6□□□□□ -0.23
SMAD4-215ENST00000592911 SETD5Q9C0A6 1442 aa13.59□□□□□ -0.23
SMAD4-215ENST00000592911 MYCNP04198 464 aaPredicted RBP13.59□□□□□ -0.23
SMAD4-215ENST00000592911 RXRBP28702 533 aa13.59□□□□□ -0.23
SMAD4-215ENST00000592911 NHSL1Q5SYE7 1610 aa13.58□□□□□ -0.24
SMAD4-215ENST00000592911 C14orf37Q86TY3 774 aa13.56□□□□□ -0.24
SMAD4-215ENST00000592911 RBM33Q96EV2 1170 aaKnown RBP13.56□□□□□ -0.24
SMAD4-215ENST00000592911 IQGAP3Q86VI3 1631 aa13.56□□□□□ -0.24
SMAD4-215ENST00000592911 XRN1Q8IZH2 1706 aaKnown RBP13.56□□□□□ -0.24
SMAD4-215ENST00000592911 SETBP1Q9Y6X0 1596 aa13.55□□□□□ -0.24
SMAD4-215ENST00000592911 ASXL1Q8IXJ9 1541 aa13.54□□□□□ -0.24
SMAD4-215ENST00000592911 E9PCH4 1651 aa13.54□□□□□ -0.24
SMAD4-215ENST00000592911 BRINP3Q76B58 766 aa13.54□□□□□ -0.24
SMAD4-215ENST00000592911 LAMC1P11047 1609 aa13.53□□□□□ -0.24
SMAD4-215ENST00000592911 LRRC59Q96AG4 307 aaKnown RBP13.53□□□□□ -0.24
SMAD4-215ENST00000592911 ROCK1Q13464 1354 aa13.52□□□□□ -0.25
SMAD4-215ENST00000592911 MST1RQ04912 1400 aa13.51□□□□□ -0.25
SMAD4-215ENST00000592911 RBM6P78332 1123 aaKnown RBP13.51□□□□□ -0.25
SMAD4-215ENST00000592911 TRIM52Q96A61 297 aa13.51□□□□□ -0.25
SMAD4-215ENST00000592911 CHIC2Q9UKJ5 165 aa13.51□□□□□ -0.25
SMAD4-215ENST00000592911 AFF2P51816 1311 aa13.5□□□□□ -0.25
SMAD4-215ENST00000592911 AMOTL2Q9Y2J4 779 aa13.5□□□□□ -0.25
SMAD4-215ENST00000592911 NRXN3Q9Y4C0 1643 aa13.5□□□□□ -0.25
SMAD4-215ENST00000592911 NGLY1Q96IV0 654 aa13.49□□□□□ -0.25
SMAD4-215ENST00000592911 ADGRL3Q9HAR2 1447 aa13.48□□□□□ -0.25
SMAD4-215ENST00000592911 RGS12O14924 1447 aa13.47□□□□□ -0.25
SMAD4-215ENST00000592911 PTPRUQ92729 1446 aa13.47□□□□□ -0.25
SMAD4-215ENST00000592911 SRCAPQ6ZRS2 3230 aa13.47□□□□□ -0.25
SMAD4-215ENST00000592911 ATAD2Q6PL18 1390 aa13.47□□□□□ -0.25
SMAD4-215ENST00000592911 PRAG1Q86YV5 1406 aa13.47□□□□□ -0.25
SMAD4-215ENST00000592911 PNPLA6Q8IY17 1366 aa13.46□□□□□ -0.25
SMAD4-215ENST00000592911 SPHKAPQ2M3C7 1700 aa13.46□□□□□ -0.25
SMAD4-215ENST00000592911 PTCH1Q13635 1447 aa13.45□□□□□ -0.26
SMAD4-215ENST00000592911 CHGAP10645 457 aaKnown RBP13.44□□□□□ -0.26
SMAD4-215ENST00000592911 CCDC125Q86Z20 511 aa13.44□□□□□ -0.26
SMAD4-215ENST00000592911 QTRT2Q9H974 415 aaKnown RBP13.44□□□□□ -0.26
SMAD4-215ENST00000592911 COL22A1Q8NFW1 1626 aaPredicted RBP13.43□□□□□ -0.26
SMAD4-215ENST00000592911 C1QBPQ07021 282 aaKnown RBP13.43□□□□□ -0.26
SMAD4-215ENST00000592911 NALCNQ8IZF0 1738 aa13.43□□□□□ -0.26
SMAD4-215ENST00000592911 NUTM2BA6NNL0 878 aaPredicted RBP13.42□□□□□ -0.26
SMAD4-215ENST00000592911 NUTM2EB1AL46 878 aaPredicted RBP13.42□□□□□ -0.26
SMAD4-215ENST00000592911 NUTM2AQ8IVF1 878 aaPredicted RBP13.42□□□□□ -0.26
SMAD4-215ENST00000592911 FAM50AQ14320 339 aaKnown RBP13.41□□□□□ -0.26
SMAD4-215ENST00000592911 C8orf37Q96NL8 207 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms