RNA–Protein interactions for RNA: ENST00000592333.1

CCDC43-205, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 692 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-205ENST00000592333 SLC26A8Q96RN1 970 aa28.82■■■□□ 2.2
CCDC43-205ENST00000592333 NKTRP30414 1462 aaKnown RBP28.82■■■□□ 2.2
CCDC43-205ENST00000592333 E9PCH4 1651 aa28.81■■■□□ 2.2
CCDC43-205ENST00000592333 NWD1Q149M9 1564 aa28.8■■■□□ 2.2
CCDC43-205ENST00000592333 NUP155O75694 1391 aa28.8■■■□□ 2.2
CCDC43-205ENST00000592333 TMEM94Q12767 1356 aa28.8■■■□□ 2.2
CCDC43-205ENST00000592333 MED1Q15648 1581 aaPredicted RBP28.79■■■□□ 2.2
CCDC43-205ENST00000592333 RIMS2Q9UQ26 1411 aa28.79■■■□□ 2.2
CCDC43-205ENST00000592333 FAM135BQ49AJ0 1406 aa28.78■■■□□ 2.2
CCDC43-205ENST00000592333 PROSER2Q86WR7 435 aaPredicted RBP28.77■■■□□ 2.2
CCDC43-205ENST00000592333 PPP1R15AO75807 674 aaPredicted RBP28.76■■■□□ 2.19
CCDC43-205ENST00000592333 BCANQ96GW7 911 aa28.76■■■□□ 2.19
CCDC43-205ENST00000592333 TBX22Q9Y458 520 aa28.76■■■□□ 2.19
CCDC43-205ENST00000592333 MYO5BQ9ULV0 1848 aa28.74■■■□□ 2.19
CCDC43-205ENST00000592333 ITGAEP38570 1179 aa28.74■■■□□ 2.19
CCDC43-205ENST00000592333 RRBP1Q9P2E9 1410 aaKnown RBP28.73■■■□□ 2.19
CCDC43-205ENST00000592333 NCOA3Q9Y6Q9 1424 aa28.71■■■□□ 2.19
CCDC43-205ENST00000592333 PIK3R4Q99570 1358 aa28.7■■■□□ 2.18
CCDC43-205ENST00000592333 CHD2O14647 1828 aaKnown RBP28.69■■■□□ 2.18
CCDC43-205ENST00000592333 CHGAP10645 457 aaKnown RBP28.69■■■□□ 2.18
CCDC43-205ENST00000592333 DIP2AQ14689 1571 aa28.69■■■□□ 2.18
CCDC43-205ENST00000592333 MSH6P52701 1360 aa28.67■■■□□ 2.18
CCDC43-205ENST00000592333 PPARGC1BQ86YN6 1023 aaKnown RBP28.67■■■□□ 2.18
CCDC43-205ENST00000592333 ADAMTS13Q76LX8 1427 aa28.64■■■□□ 2.18
CCDC43-205ENST00000592333 PHF23Q9BUL5 403 aaPredicted RBP28.62■■■□□ 2.17
CCDC43-205ENST00000592333 SPHKAPQ2M3C7 1700 aa28.6■■■□□ 2.17
CCDC43-205ENST00000592333 SLAIN2Q9P270 581 aa28.58■■■□□ 2.17
CCDC43-205ENST00000592333 NAIPQ13075 1403 aa28.58■■■□□ 2.17
CCDC43-205ENST00000592333 ROBO1Q9Y6N7 1651 aa28.58■■■□□ 2.16
CCDC43-205ENST00000592333 RBM33Q96EV2 1170 aaKnown RBP28.57■■■□□ 2.16
CCDC43-205ENST00000592333 TRPM2O94759 1503 aa28.56■■■□□ 2.16
CCDC43-205ENST00000592333 SENP3Q9H4L4 574 aaPredicted RBP28.55■■■□□ 2.16
CCDC43-205ENST00000592333 NUTM2DQ5VT03 806 aaPredicted RBP28.53■■■□□ 2.16
CCDC43-205ENST00000592333 C19orf44Q9H6X5 657 aa28.52■■■□□ 2.16
CCDC43-205ENST00000592333 HFM1A2PYH4 1435 aa28.52■■■□□ 2.16
CCDC43-205ENST00000592333 SETBP1Q9Y6X0 1596 aa28.51■■■□□ 2.15
CCDC43-205ENST00000592333 CADPS2Q86UW7 1296 aa28.5■■■□□ 2.15
CCDC43-205ENST00000592333 AMOTL2Q9Y2J4 779 aa28.49■■■□□ 2.15
CCDC43-205ENST00000592333 ZNF326Q5BKZ1 582 aaKnown RBP28.47■■■□□ 2.15
CCDC43-205ENST00000592333 C14orf37Q86TY3 774 aa28.46■■■□□ 2.15
CCDC43-205ENST00000592333 NRXN3Q9Y4C0 1643 aa28.44■■■□□ 2.14
CCDC43-205ENST00000592333 ATF3P18847 181 aa28.44■■■□□ 2.14
CCDC43-205ENST00000592333 DCCP43146 1447 aa28.43■■■□□ 2.14
CCDC43-205ENST00000592333 PTPRUQ92729 1446 aa28.43■■■□□ 2.14
CCDC43-205ENST00000592333 CLTCL1P53675 1640 aa28.43■■■□□ 2.14
CCDC43-205ENST00000592333 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.42■■■□□ 2.14
CCDC43-205ENST00000592333 JCADQ9P266 1359 aa28.41■■■□□ 2.14
CCDC43-205ENST00000592333 KIF1BO60333 1816 aa28.41■■■□□ 2.14
CCDC43-205ENST00000592333 PHLPP1O60346 1717 aa28.4■■■□□ 2.14
CCDC43-205ENST00000592333 XRN1Q8IZH2 1706 aaKnown RBP28.4■■■□□ 2.14
CCDC43-205ENST00000592333 NEXMIFQ5QGS0 1516 aa28.4■■■□□ 2.14
CCDC43-205ENST00000592333 RGS17Q9UGC6 210 aaPredicted RBP28.39■■■□□ 2.14
CCDC43-205ENST00000592333 TRIM52Q96A61 297 aa28.38■■■□□ 2.13
CCDC43-205ENST00000592333 RPGRIP1LQ68CZ1 1315 aa28.38■■■□□ 2.13
CCDC43-205ENST00000592333 VGFO15240 615 aaPredicted RBP28.37■■■□□ 2.13
CCDC43-205ENST00000592333 SLC4A1APQ9BWU0 796 aaKnown RBP28.36■■■□□ 2.13
CCDC43-205ENST00000592333 AHDC1Q5TGY3 1603 aaPredicted RBP28.35■■■□□ 2.13
CCDC43-205ENST00000592333 METP08581 1390 aa28.35■■■□□ 2.13
CCDC43-205ENST00000592333 COL16A1Q07092 1604 aaPredicted RBP28.34■■■□□ 2.13
CCDC43-205ENST00000592333 ACIN1Q9UKV3 1341 aaKnown RBP28.33■■■□□ 2.13
CCDC43-205ENST00000592333 SPATA31A6Q5VVP1 1343 aa28.31■■■□□ 2.12
CCDC43-205ENST00000592333 BRINP3Q76B58 766 aa28.27■■■□□ 2.12
CCDC43-205ENST00000592333 ADGRL3Q9HAR2 1447 aa28.26■■■□□ 2.12
CCDC43-205ENST00000592333 PRAG1Q86YV5 1406 aa28.26■■■□□ 2.11
CCDC43-205ENST00000592333 MST1RQ04912 1400 aa28.25■■■□□ 2.11
CCDC43-205ENST00000592333 PTCH1Q13635 1447 aa28.24■■■□□ 2.11
CCDC43-205ENST00000592333 SHPRHQ149N8 1683 aa28.22■■■□□ 2.11
CCDC43-205ENST00000592333 POTEAQ6S8J7 498 aa28.21■■■□□ 2.11
CCDC43-205ENST00000592333 ASXL1Q8IXJ9 1541 aa28.2■■■□□ 2.1
CCDC43-205ENST00000592333 SETD1AO15047 1707 aaKnown RBP28.19■■■□□ 2.1
CCDC43-205ENST00000592333 PPLO60437 1756 aa28.19■■■□□ 2.1
CCDC43-205ENST00000592333 SETD5Q9C0A6 1442 aa28.18■■■□□ 2.1
CCDC43-205ENST00000592333 CCDC144AA2RUR9 1427 aa28.18■■■□□ 2.1
CCDC43-205ENST00000592333 MPHOSPH9Q99550 1183 aa28.16■■■□□ 2.1
CCDC43-205ENST00000592333 NHSL1Q5SYE7 1610 aa28.15■■■□□ 2.1
CCDC43-205ENST00000592333 LRRC59Q96AG4 307 aaKnown RBP28.15■■■□□ 2.1
CCDC43-205ENST00000592333 NALCNQ8IZF0 1738 aa28.15■■■□□ 2.1
CCDC43-205ENST00000592333 ZNF772Q68DY9 489 aaPredicted RBP28.13■■■□□ 2.09
CCDC43-205ENST00000592333 LRP6O75581 1613 aa28.13■■■□□ 2.09
CCDC43-205ENST00000592333 ANKRD30BQ9BXX2 1392 aa28.12■■■□□ 2.09
CCDC43-205ENST00000592333 ROBO2Q9HCK4 1378 aa28.11■■■□□ 2.09
CCDC43-205ENST00000592333 SPATA31E1Q6ZUB1 1445 aa28.11■■■□□ 2.09
CCDC43-205ENST00000592333 MEX3CQ5U5Q3 659 aaKnown RBP28.1■■■□□ 2.09
CCDC43-205ENST00000592333 C1orf167Q5SNV9 1468 aa28.09■■■□□ 2.09
CCDC43-205ENST00000592333 FOXD1Q16676 465 aa28.09■■■□□ 2.09
CCDC43-205ENST00000592333 LAMC1P11047 1609 aa28.07■■■□□ 2.08
CCDC43-205ENST00000592333 ADGRF5Q8IZF2 1346 aa28.03■■■□□ 2.08
CCDC43-205ENST00000592333 TECPR2O15040 1411 aa28.02■■■□□ 2.08
CCDC43-205ENST00000592333 IFT172Q9UG01 1749 aa28.02■■■□□ 2.08
CCDC43-205ENST00000592333 RGL3Q3MIN7 710 aa28.02■■■□□ 2.08
CCDC43-205ENST00000592333 PNPLA6Q8IY17 1366 aa27.99■■■□□ 2.07
CCDC43-205ENST00000592333 ABCC11Q96J66 1382 aa27.99■■■□□ 2.07
CCDC43-205ENST00000592333 SOS2Q07890 1332 aaPredicted RBP27.99■■■□□ 2.07
CCDC43-205ENST00000592333 PIK3C2GO75747 1445 aa27.99■■■□□ 2.07
CCDC43-205ENST00000592333 CDC42BPGQ6DT37 1551 aa27.99■■■□□ 2.07
CCDC43-205ENST00000592333 LRPPRCP42704 1394 aaKnown RBP27.99■■■□□ 2.07
CCDC43-205ENST00000592333 NUTM2BA6NNL0 878 aaPredicted RBP27.97■■■□□ 2.07
CCDC43-205ENST00000592333 NUTM2EB1AL46 878 aaPredicted RBP27.97■■■□□ 2.07
CCDC43-205ENST00000592333 NUTM2AQ8IVF1 878 aaPredicted RBP27.97■■■□□ 2.07
CCDC43-205ENST00000592333 SIRT1Q96EB6 747 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms