RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 COL16A1Q07092 1604 aaPredicted RBP15.98■□□□□ 0.15
LIG3-212ENST00000590181 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.98■□□□□ 0.15
LIG3-212ENST00000590181 RPRD2Q5VT52 1461 aaKnown RBP15.97■□□□□ 0.15
LIG3-212ENST00000590181 NOS1P29475 1434 aa15.96■□□□□ 0.15
LIG3-212ENST00000590181 POTEAQ6S8J7 498 aa15.95■□□□□ 0.14
LIG3-212ENST00000590181 SLC52A1Q9NWF4 448 aa15.95■□□□□ 0.14
LIG3-212ENST00000590181 RRBP1Q9P2E9 1410 aaKnown RBP15.94■□□□□ 0.14
LIG3-212ENST00000590181 KCNA6P17658 529 aa15.94■□□□□ 0.14
LIG3-212ENST00000590181 MSH6P52701 1360 aa15.94■□□□□ 0.14
LIG3-212ENST00000590181 SHPRHQ149N8 1683 aa15.93■□□□□ 0.14
LIG3-212ENST00000590181 SLC26A8Q96RN1 970 aa15.93■□□□□ 0.14
LIG3-212ENST00000590181 TMEM131LA2VDJ0 1609 aa15.93■□□□□ 0.14
LIG3-212ENST00000590181 PROSER2Q86WR7 435 aaPredicted RBP15.92■□□□□ 0.14
LIG3-212ENST00000590181 RBM33Q96EV2 1170 aaKnown RBP15.92■□□□□ 0.14
LIG3-212ENST00000590181 ACIN1Q9UKV3 1341 aaKnown RBP15.92■□□□□ 0.14
LIG3-212ENST00000590181 IDI1Q13907 227 aa15.91■□□□□ 0.14
LIG3-212ENST00000590181 ZFYVE9O95405 1425 aa15.91■□□□□ 0.14
LIG3-212ENST00000590181 UNC13BO14795 1591 aa15.91■□□□□ 0.14
LIG3-212ENST00000590181 DIP2AQ14689 1571 aa15.91■□□□□ 0.14
LIG3-212ENST00000590181 HDGFP51858 240 aaKnown RBP15.9■□□□□ 0.14
LIG3-212ENST00000590181 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.9■□□□□ 0.14
LIG3-212ENST00000590181 LRP6O75581 1613 aa15.9■□□□□ 0.14
LIG3-212ENST00000590181 AHDC1Q5TGY3 1603 aaPredicted RBP15.9■□□□□ 0.14
LIG3-212ENST00000590181 JCADQ9P266 1359 aa15.89■□□□□ 0.13
LIG3-212ENST00000590181 PLEKHG1Q9ULL1 1385 aa15.88■□□□□ 0.13
LIG3-212ENST00000590181 RIMS2Q9UQ26 1411 aa15.87■□□□□ 0.13
LIG3-212ENST00000590181 E9PCH4 1651 aa15.87■□□□□ 0.13
LIG3-212ENST00000590181 BCANQ96GW7 911 aa15.87■□□□□ 0.13
LIG3-212ENST00000590181 IQGAP3Q86VI3 1631 aa15.84■□□□□ 0.13
LIG3-212ENST00000590181 TRPM2O94759 1503 aa15.84■□□□□ 0.13
LIG3-212ENST00000590181 PPP1R15AO75807 674 aaPredicted RBP15.83■□□□□ 0.12
LIG3-212ENST00000590181 ITGAEP38570 1179 aa15.83■□□□□ 0.12
LIG3-212ENST00000590181 PPARGC1BQ86YN6 1023 aaKnown RBP15.83■□□□□ 0.12
LIG3-212ENST00000590181 SLAIN2Q9P270 581 aa15.83■□□□□ 0.12
LIG3-212ENST00000590181 NUP155O75694 1391 aa15.83■□□□□ 0.12
LIG3-212ENST00000590181 XRN1Q8IZH2 1706 aaKnown RBP15.82■□□□□ 0.12
LIG3-212ENST00000590181 NHSL1Q5SYE7 1610 aa15.81■□□□□ 0.12
LIG3-212ENST00000590181 NCOA3Q9Y6Q9 1424 aa15.8■□□□□ 0.12
LIG3-212ENST00000590181 ADAMTS13Q76LX8 1427 aa15.79■□□□□ 0.12
LIG3-212ENST00000590181 SPATA31A6Q5VVP1 1343 aa15.79■□□□□ 0.12
LIG3-212ENST00000590181 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.79■□□□□ 0.12
LIG3-212ENST00000590181 NRXN3Q9Y4C0 1643 aa15.79■□□□□ 0.12
LIG3-212ENST00000590181 HFM1A2PYH4 1435 aa15.78■□□□□ 0.12
LIG3-212ENST00000590181 MEX3CQ5U5Q3 659 aaKnown RBP15.78■□□□□ 0.12
LIG3-212ENST00000590181 C14orf37Q86TY3 774 aa15.78■□□□□ 0.12
LIG3-212ENST00000590181 SPHKAPQ2M3C7 1700 aa15.77■□□□□ 0.12
LIG3-212ENST00000590181 ASXL1Q8IXJ9 1541 aa15.77■□□□□ 0.11
LIG3-212ENST00000590181 NAIPQ13075 1403 aa15.77■□□□□ 0.11
LIG3-212ENST00000590181 NALCNQ8IZF0 1738 aa15.76■□□□□ 0.11
LIG3-212ENST00000590181 PIK3R4Q99570 1358 aa15.75■□□□□ 0.11
LIG3-212ENST00000590181 TRIM52Q96A61 297 aa15.74■□□□□ 0.11
LIG3-212ENST00000590181 DCCP43146 1447 aa15.74■□□□□ 0.11
LIG3-212ENST00000590181 CDK12Q9NYV4 1490 aaPredicted RBP15.73■□□□□ 0.11
LIG3-212ENST00000590181 CHGAP10645 457 aaKnown RBP15.73■□□□□ 0.11
LIG3-212ENST00000590181 ZNF772Q68DY9 489 aaPredicted RBP15.73■□□□□ 0.11
LIG3-212ENST00000590181 CADPS2Q86UW7 1296 aa15.73■□□□□ 0.11
LIG3-212ENST00000590181 TBX22Q9Y458 520 aa15.73■□□□□ 0.11
LIG3-212ENST00000590181 SETBP1Q9Y6X0 1596 aa15.73■□□□□ 0.11
LIG3-212ENST00000590181 ATF3P18847 181 aa15.72■□□□□ 0.11
LIG3-212ENST00000590181 PTPRUQ92729 1446 aa15.71■□□□□ 0.11
LIG3-212ENST00000590181 NUTM2DQ5VT03 806 aaPredicted RBP15.71■□□□□ 0.11
LIG3-212ENST00000590181 UPF1Q92900 1129 aaKnown RBP eCLIP15.7■□□□□ 0.1
LIG3-212ENST00000590181 MST1RQ04912 1400 aa15.69■□□□□ 0.1
LIG3-212ENST00000590181 BRINP3Q76B58 766 aa15.68■□□□□ 0.1
LIG3-212ENST00000590181 C19orf44Q9H6X5 657 aa15.68■□□□□ 0.1
LIG3-212ENST00000590181 RGS12O14924 1447 aa15.68■□□□□ 0.1
LIG3-212ENST00000590181 SETD5Q9C0A6 1442 aa15.67■□□□□ 0.1
LIG3-212ENST00000590181 NUTM2BA6NNL0 878 aaPredicted RBP15.66■□□□□ 0.1
LIG3-212ENST00000590181 NUTM2EB1AL46 878 aaPredicted RBP15.66■□□□□ 0.1
LIG3-212ENST00000590181 NUTM2AQ8IVF1 878 aaPredicted RBP15.66■□□□□ 0.1
LIG3-212ENST00000590181 AFF2P51816 1311 aa15.66■□□□□ 0.1
LIG3-212ENST00000590181 LAMC1P11047 1609 aa15.65■□□□□ 0.1
LIG3-212ENST00000590181 CLTCL1P53675 1640 aa15.65■□□□□ 0.1
LIG3-212ENST00000590181 RXRBP28702 533 aa15.65■□□□□ 0.1
LIG3-212ENST00000590181 SLC4A1APQ9BWU0 796 aaKnown RBP15.65■□□□□ 0.1
LIG3-212ENST00000590181 ADGRL3Q9HAR2 1447 aa15.65■□□□□ 0.1
LIG3-212ENST00000590181 KIF1BO60333 1816 aa15.64■□□□□ 0.09
LIG3-212ENST00000590181 AMOTL2Q9Y2J4 779 aa15.64■□□□□ 0.09
LIG3-212ENST00000590181 RPGRIP1LQ68CZ1 1315 aa15.64■□□□□ 0.09
LIG3-212ENST00000590181 NEXMIFQ5QGS0 1516 aa15.63■□□□□ 0.09
LIG3-212ENST00000590181 PNPLA6Q8IY17 1366 aa15.62■□□□□ 0.09
LIG3-212ENST00000590181 HRCP23327 699 aa15.62■□□□□ 0.09
LIG3-212ENST00000590181 VGFO15240 615 aaPredicted RBP15.61■□□□□ 0.09
LIG3-212ENST00000590181 COL22A1Q8NFW1 1626 aaPredicted RBP15.59■□□□□ 0.09
LIG3-212ENST00000590181 SRCAPQ6ZRS2 3230 aa15.59■□□□□ 0.09
LIG3-212ENST00000590181 MARF1Q9Y4F3 1742 aaKnown RBP15.59■□□□□ 0.09
LIG3-212ENST00000590181 METP08581 1390 aa15.59■□□□□ 0.09
LIG3-212ENST00000590181 ZNF326Q5BKZ1 582 aaKnown RBP15.58■□□□□ 0.08
LIG3-212ENST00000590181 C8orf37Q96NL8 207 aa15.58■□□□□ 0.08
LIG3-212ENST00000590181 EP400Q96L91 3159 aa15.57■□□□□ 0.08
LIG3-212ENST00000590181 MPHOSPH9Q99550 1183 aa15.56■□□□□ 0.08
LIG3-212ENST00000590181 PTCH1Q13635 1447 aa15.56■□□□□ 0.08
LIG3-212ENST00000590181 C1orf167Q5SNV9 1468 aa15.55■□□□□ 0.08
LIG3-212ENST00000590181 LRRC59Q96AG4 307 aaKnown RBP15.55■□□□□ 0.08
LIG3-212ENST00000590181 RBM6P78332 1123 aaKnown RBP15.54■□□□□ 0.08
LIG3-212ENST00000590181 DDX17Q92841 729 aaKnown RBP15.54■□□□□ 0.08
LIG3-212ENST00000590181 PPLO60437 1756 aa15.54■□□□□ 0.08
LIG3-212ENST00000590181 CCDC144AA2RUR9 1427 aa15.53■□□□□ 0.08
LIG3-212ENST00000590181 ATAD2Q6PL18 1390 aa15.52■□□□□ 0.08
LIG3-212ENST00000590181 CDC42BPGQ6DT37 1551 aa15.52■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms