RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 CDC42BPBQ9Y5S2 1711 aa10.05□□□□□ -0.8
ZNF540-206ENST00000589117 ERICH6Q7L0X2 663 aa10.05□□□□□ -0.8
ZNF540-206ENST00000589117 MAST1Q9Y2H9 1570 aa10.05□□□□□ -0.8
ZNF540-206ENST00000589117 FAM135AQ9P2D6 1515 aa10.05□□□□□ -0.8
ZNF540-206ENST00000589117 KTN1Q86UP2 1357 aaKnown RBP10.04□□□□□ -0.8
ZNF540-206ENST00000589117 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.03□□□□□ -0.8
ZNF540-206ENST00000589117 SYCP2Q9BX26 1530 aa10.03□□□□□ -0.8
ZNF540-206ENST00000589117 CLEC11AQ9Y240 323 aa10.02□□□□□ -0.8
ZNF540-206ENST00000589117 KDM5CP41229 1560 aa10.02□□□□□ -0.8
ZNF540-206ENST00000589117 PLCH2O75038 1416 aa10.02□□□□□ -0.81
ZNF540-206ENST00000589117 ZC3H15Q8WU90 426 aaKnown RBP10.02□□□□□ -0.81
ZNF540-206ENST00000589117 DUOX2Q9NRD8 1548 aa10.02□□□□□ -0.81
ZNF540-206ENST00000589117 UHRF1BP1LA0JNW5 1464 aa10.02□□□□□ -0.81
ZNF540-206ENST00000589117 MYO5CQ9NQX4 1742 aa10.02□□□□□ -0.81
ZNF540-206ENST00000589117 ST20-MTHFSA0A0A6YYL1 179 aa10.01□□□□□ -0.81
ZNF540-206ENST00000589117 TMC1Q8TDI8 760 aa10.01□□□□□ -0.81
ZNF540-206ENST00000589117 ERBINQ96RT1 1412 aa10.01□□□□□ -0.81
ZNF540-206ENST00000589117 RALBP1Q15311 655 aa10.01□□□□□ -0.81
ZNF540-206ENST00000589117 SLC24A3Q9HC58 644 aa10.01□□□□□ -0.81
ZNF540-206ENST00000589117 PLXNC1O60486 1568 aa10.01□□□□□ -0.81
ZNF540-206ENST00000589117 CCDC184Q52MB2 194 aa10□□□□□ -0.81
ZNF540-206ENST00000589117 STAC3Q96MF2 364 aa10□□□□□ -0.81
ZNF540-206ENST00000589117 TTC37Q6PGP7 1564 aa10□□□□□ -0.81
ZNF540-206ENST00000589117 DHX29Q7Z478 1369 aaKnown RBP10□□□□□ -0.81
ZNF540-206ENST00000589117 WDR70Q9NW82 654 aa10□□□□□ -0.81
ZNF540-206ENST00000589117 UNC13BO14795 1591 aa9.99□□□□□ -0.81
ZNF540-206ENST00000589117 NEUROD2Q15784 382 aa9.99□□□□□ -0.81
ZNF540-206ENST00000589117 RYDENQ9NUL5 291 aaKnown RBP9.99□□□□□ -0.81
ZNF540-206ENST00000589117 RGL3Q3MIN7 710 aa9.99□□□□□ -0.81
ZNF540-206ENST00000589117 SEMA3EO15041 775 aa9.98□□□□□ -0.81
ZNF540-206ENST00000589117 PRAG1Q86YV5 1406 aa9.98□□□□□ -0.81
ZNF540-206ENST00000589117 PPP4R2Q9NY27 417 aa9.98□□□□□ -0.81
ZNF540-206ENST00000589117 ATP10AO60312 1499 aa9.97□□□□□ -0.81
ZNF540-206ENST00000589117 SPAG9O60271 1321 aaKnown RBP9.97□□□□□ -0.81
ZNF540-206ENST00000589117 WASHC2CQ9Y4E1 1318 aa9.97□□□□□ -0.81
ZNF540-206ENST00000589117 BCORL1Q5H9F3 1711 aa9.97□□□□□ -0.81
ZNF540-206ENST00000589117 RTEL1-TNFRSF6BF6WH68 1400 aa9.97□□□□□ -0.81
ZNF540-206ENST00000589117 IQGAP3Q86VI3 1631 aa9.97□□□□□ -0.81
ZNF540-206ENST00000589117 PRR29P0C7W0 189 aa9.96□□□□□ -0.81
ZNF540-206ENST00000589117 MYBBP1AQ9BQG0 1328 aaKnown RBP9.96□□□□□ -0.81
ZNF540-206ENST00000589117 BRD4O60885 1362 aaPredicted RBP9.96□□□□□ -0.82
ZNF540-206ENST00000589117 CLASP1Q7Z460 1538 aa9.95□□□□□ -0.82
ZNF540-206ENST00000589117 ARAP3Q8WWN8 1544 aa9.95□□□□□ -0.82
ZNF540-206ENST00000589117 SPDYE1Q8NFV5 336 aaPredicted RBP9.95□□□□□ -0.82
ZNF540-206ENST00000589117 MFRPQ9BY79 579 aa9.95□□□□□ -0.82
ZNF540-206ENST00000589117 ZCCHC11Q5TAX3 1644 aaKnown RBP9.95□□□□□ -0.82
ZNF540-206ENST00000589117 GPRASP1Q5JY77 1395 aa9.95□□□□□ -0.82
ZNF540-206ENST00000589117 ERCC6L2Q5T890 1561 aa9.95□□□□□ -0.82
ZNF540-206ENST00000589117 PPP1R37O75864 691 aa9.95□□□□□ -0.82
ZNF540-206ENST00000589117 CNGB1Q14028 1251 aaPredicted RBP9.95□□□□□ -0.82
ZNF540-206ENST00000589117 EIF2AK4Q9P2K8 1649 aaKnown RBP9.94□□□□□ -0.82
ZNF540-206ENST00000589117 PNISRQ8TF01 805 aaKnown RBP9.94□□□□□ -0.82
ZNF540-206ENST00000589117 KANK1Q14678 1352 aa9.94□□□□□ -0.82
ZNF540-206ENST00000589117 TMF1P82094 1093 aa9.94□□□□□ -0.82
ZNF540-206ENST00000589117 MAGI2Q86UL8 1455 aa9.94□□□□□ -0.82
ZNF540-206ENST00000589117 SMG6Q86US8 1419 aaKnown RBP9.93□□□□□ -0.82
ZNF540-206ENST00000589117 PLA2R1Q13018 1463 aa9.93□□□□□ -0.82
ZNF540-206ENST00000589117 ABCC1P33527 1531 aa9.93□□□□□ -0.82
ZNF540-206ENST00000589117 CDCA8Q53HL2 280 aa9.93□□□□□ -0.82
ZNF540-206ENST00000589117 NLRP13Q86W25 1043 aa9.93□□□□□ -0.82
ZNF540-206ENST00000589117 NUDCQ9Y266 331 aa9.93□□□□□ -0.82
ZNF540-206ENST00000589117 TRPM1Q7Z4N2 1603 aa9.92□□□□□ -0.82
ZNF540-206ENST00000589117 PCDHB8Q9UN66 801 aa9.92□□□□□ -0.82
ZNF540-206ENST00000589117 PCDHB13Q9Y5F0 798 aa9.92□□□□□ -0.82
ZNF540-206ENST00000589117 LAMC1P11047 1609 aa9.92□□□□□ -0.82
ZNF540-206ENST00000589117 A2MP01023 1474 aa9.92□□□□□ -0.82
ZNF540-206ENST00000589117 IRX6P78412 446 aaPredicted RBP9.91□□□□□ -0.82
ZNF540-206ENST00000589117 MYT1LQ9UL68 1186 aa9.91□□□□□ -0.82
ZNF540-206ENST00000589117 NBPF1Q3BBV0 1214 aa9.91□□□□□ -0.82
ZNF540-206ENST00000589117 RBM19Q9Y4C8 960 aaKnown RBP9.91□□□□□ -0.82
ZNF540-206ENST00000589117 TRAPPC8Q9Y2L5 1435 aa9.91□□□□□ -0.82
ZNF540-206ENST00000589117 AFAP1Q8N556 730 aa9.9□□□□□ -0.82
ZNF540-206ENST00000589117 WDR7Q9Y4E6 1490 aa9.9□□□□□ -0.82
ZNF540-206ENST00000589117 LRPPRCP42704 1394 aaKnown RBP9.89□□□□□ -0.83
ZNF540-206ENST00000589117 PRDM15P57071 1507 aaPredicted RBP9.88□□□□□ -0.83
ZNF540-206ENST00000589117 PDE3BQ13370 1112 aa9.88□□□□□ -0.83
ZNF540-206ENST00000589117 FANCAO15360 1455 aa9.88□□□□□ -0.83
ZNF540-206ENST00000589117 TESPA1A2RU30 521 aaPredicted RBP9.88□□□□□ -0.83
ZNF540-206ENST00000589117 TESK2Q96S53 571 aa9.88□□□□□ -0.83
ZNF540-206ENST00000589117 PARD3Q8TEW0 1356 aa9.88□□□□□ -0.83
ZNF540-206ENST00000589117 COL17A1Q9UMD9 1497 aaPredicted RBP9.87□□□□□ -0.83
ZNF540-206ENST00000589117 ARHGEF1Q92888 912 aaKnown RBP9.87□□□□□ -0.83
ZNF540-206ENST00000589117 TSPYL2Q9H2G4 693 aaPredicted RBP9.87□□□□□ -0.83
ZNF540-206ENST00000589117 PER1O15534 1290 aaPredicted RBP9.87□□□□□ -0.83
ZNF540-206ENST00000589117 EIF3AQ14152 1382 aaKnown RBP9.86□□□□□ -0.83
ZNF540-206ENST00000589117 KIF3BO15066 747 aa9.86□□□□□ -0.83
ZNF540-206ENST00000589117 PANK3Q9H999 370 aa9.86□□□□□ -0.83
ZNF540-206ENST00000589117 INSRP06213 1382 aa9.86□□□□□ -0.83
ZNF540-206ENST00000589117 ZFYVE16Q7Z3T8 1539 aa9.86□□□□□ -0.83
ZNF540-206ENST00000589117 PTPRTO14522 1441 aa9.86□□□□□ -0.83
ZNF540-206ENST00000589117 E9PCH4 1651 aa9.86□□□□□ -0.83
ZNF540-206ENST00000589117 KNSTRNQ9Y448 316 aa9.85□□□□□ -0.83
ZNF540-206ENST00000589117 TRPM2O94759 1503 aa9.85□□□□□ -0.83
ZNF540-206ENST00000589117 E2F4Q16254 413 aa9.85□□□□□ -0.83
ZNF540-206ENST00000589117 SCAPERQ9BY12 1400 aa9.85□□□□□ -0.83
ZNF540-206ENST00000589117 RNF123Q5XPI4 1314 aa9.85□□□□□ -0.83
ZNF540-206ENST00000589117 ADGRL1O94910 1474 aa9.85□□□□□ -0.83
ZNF540-206ENST00000589117 ATP7AQ04656 1500 aa9.84□□□□□ -0.83
ZNF540-206ENST00000589117 REM2Q8IYK8 340 aaPredicted RBP9.84□□□□□ -0.83
ZNF540-206ENST00000589117 ABCA9Q8IUA7 1624 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms