RNA–Protein interactions for RNA: ENST00000588907.2

SCAMP4-211, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 4

Gene SCAMP4, Length 547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-211ENST00000588907 IFT172Q9UG01 1749 aa24.43■■□□□ 1.5
SCAMP4-211ENST00000588907 PPLO60437 1756 aa24.42■■□□□ 1.5
SCAMP4-211ENST00000588907 NEXMIFQ5QGS0 1516 aa24.42■■□□□ 1.5
SCAMP4-211ENST00000588907 MYOM2P54296 1465 aa24.42■■□□□ 1.5
SCAMP4-211ENST00000588907 ARHGAP23Q9P227 1491 aa24.42■■□□□ 1.5
SCAMP4-211ENST00000588907 ZFYVE9O95405 1425 aa24.41■■□□□ 1.5
SCAMP4-211ENST00000588907 L3MBTL2Q969R5 705 aa24.4■■□□□ 1.5
SCAMP4-211ENST00000588907 RIMS2Q9UQ26 1411 aa24.4■■□□□ 1.5
SCAMP4-211ENST00000588907 LMTK3Q96Q04 1460 aa24.39■■□□□ 1.5
SCAMP4-211ENST00000588907 VGFO15240 615 aaPredicted RBP24.39■■□□□ 1.49
SCAMP4-211ENST00000588907 EID1Q9Y6B2 187 aa24.38■■□□□ 1.49
SCAMP4-211ENST00000588907 DCAF11Q8TEB1 546 aa24.37■■□□□ 1.49
SCAMP4-211ENST00000588907 SCAF11Q99590 1463 aaKnown RBP24.34■■□□□ 1.49
SCAMP4-211ENST00000588907 PPP1R15AO75807 674 aaPredicted RBP24.34■■□□□ 1.49
SCAMP4-211ENST00000588907 NRXN1Q9ULB1 1477 aa24.32■■□□□ 1.48
SCAMP4-211ENST00000588907 ANKLE2Q86XL3 938 aa24.32■■□□□ 1.48
SCAMP4-211ENST00000588907 POLR1AO95602 1720 aaPredicted RBP24.3■■□□□ 1.48
SCAMP4-211ENST00000588907 TXNDC2Q86VQ3 553 aa24.3■■□□□ 1.48
SCAMP4-211ENST00000588907 PRAG1Q86YV5 1406 aa24.29■■□□□ 1.48
SCAMP4-211ENST00000588907 PLEKHG1Q9ULL1 1385 aa24.29■■□□□ 1.48
SCAMP4-211ENST00000588907 PIK3C2GO75747 1445 aa24.28■■□□□ 1.48
SCAMP4-211ENST00000588907 AEBP2Q6ZN18 517 aaPredicted RBP24.28■■□□□ 1.48
SCAMP4-211ENST00000588907 KDM2AQ9Y2K7 1162 aa24.28■■□□□ 1.48
SCAMP4-211ENST00000588907 LAMC1P11047 1609 aa24.28■■□□□ 1.48
SCAMP4-211ENST00000588907 SETBP1Q9Y6X0 1596 aa24.26■■□□□ 1.47
SCAMP4-211ENST00000588907 MED14O60244 1454 aa24.26■■□□□ 1.47
SCAMP4-211ENST00000588907 KIAA1210Q9ULL0 1709 aa24.25■■□□□ 1.47
SCAMP4-211ENST00000588907 LTKP29376 864 aa24.24■■□□□ 1.47
SCAMP4-211ENST00000588907 ADGRF5Q8IZF2 1346 aa24.24■■□□□ 1.47
SCAMP4-211ENST00000588907 DIP2AQ14689 1571 aa24.23■■□□□ 1.47
SCAMP4-211ENST00000588907 NUTM2DQ5VT03 806 aaPredicted RBP24.2■■□□□ 1.46
SCAMP4-211ENST00000588907 IQGAP1P46940 1657 aa24.2■■□□□ 1.46
SCAMP4-211ENST00000588907 RALGAPBQ86X10 1494 aa24.19■■□□□ 1.46
SCAMP4-211ENST00000588907 NPHP4O75161 1426 aaPredicted RBP24.19■■□□□ 1.46
SCAMP4-211ENST00000588907 HSPA2P54652 639 aa24.19■■□□□ 1.46
SCAMP4-211ENST00000588907 TRPM1Q7Z4N2 1603 aa24.18■■□□□ 1.46
SCAMP4-211ENST00000588907 NRXN3Q9Y4C0 1643 aa24.17■■□□□ 1.46
SCAMP4-211ENST00000588907 BCANQ96GW7 911 aa24.17■■□□□ 1.46
SCAMP4-211ENST00000588907 C14orf93Q9H972 538 aaKnown RBP24.17■■□□□ 1.46
SCAMP4-211ENST00000588907 ALKQ9UM73 1620 aa24.16■■□□□ 1.46
SCAMP4-211ENST00000588907 STRCQ7RTU9 1775 aa24.14■■□□□ 1.46
SCAMP4-211ENST00000588907 NBPF8Q3BBV2 869 aa24.14■■□□□ 1.45
SCAMP4-211ENST00000588907 DMRT2Q9Y5R5 561 aa24.14■■□□□ 1.45
SCAMP4-211ENST00000588907 NCKAP5LQ9HCH0 1330 aa24.13■■□□□ 1.45
SCAMP4-211ENST00000588907 ADAMTS13Q76LX8 1427 aa24.13■■□□□ 1.45
SCAMP4-211ENST00000588907 TBX22Q9Y458 520 aa24.13■■□□□ 1.45
SCAMP4-211ENST00000588907 ROCK2O75116 1388 aaKnown RBP24.13■■□□□ 1.45
SCAMP4-211ENST00000588907 SETD1AO15047 1707 aaKnown RBP24.13■■□□□ 1.45
SCAMP4-211ENST00000588907 PIK3R4Q99570 1358 aa24.12■■□□□ 1.45
SCAMP4-211ENST00000588907 GPRASP1Q5JY77 1395 aa24.11■■□□□ 1.45
SCAMP4-211ENST00000588907 CFAP70Q5T0N1 1121 aa24.09■■□□□ 1.45
SCAMP4-211ENST00000588907 ADGRB1O14514 1584 aa24.08■■□□□ 1.44
SCAMP4-211ENST00000588907 SLC26A8Q96RN1 970 aa24.05■■□□□ 1.44
SCAMP4-211ENST00000588907 ASXL1Q8IXJ9 1541 aa24.04■■□□□ 1.44
SCAMP4-211ENST00000588907 CARD11Q9BXL7 1154 aa24.03■■□□□ 1.44
SCAMP4-211ENST00000588907 METP08581 1390 aa24.02■■□□□ 1.44
SCAMP4-211ENST00000588907 LRPPRCP42704 1394 aaKnown RBP24.02■■□□□ 1.44
SCAMP4-211ENST00000588907 EIF3AQ14152 1382 aaKnown RBP24.02■■□□□ 1.44
SCAMP4-211ENST00000588907 YTHDC2Q9H6S0 1430 aaKnown RBP24.01■■□□□ 1.43
SCAMP4-211ENST00000588907 NBPF1Q3BBV0 1214 aa24.01■■□□□ 1.43
SCAMP4-211ENST00000588907 KNDC1Q76NI1 1749 aa24.01■■□□□ 1.43
SCAMP4-211ENST00000588907 TECPR2O15040 1411 aa24■■□□□ 1.43
SCAMP4-211ENST00000588907 SENP3Q9H4L4 574 aaPredicted RBP23.99■■□□□ 1.43
SCAMP4-211ENST00000588907 ABCC11Q96J66 1382 aa23.99■■□□□ 1.43
SCAMP4-211ENST00000588907 DLC1Q96QB1 1528 aa23.99■■□□□ 1.43
SCAMP4-211ENST00000588907 NWD1Q149M9 1564 aa23.98■■□□□ 1.43
SCAMP4-211ENST00000588907 CHD2O14647 1828 aaKnown RBP23.98■■□□□ 1.43
SCAMP4-211ENST00000588907 TMEM132EQ6IEE7 984 aa23.97■■□□□ 1.43
SCAMP4-211ENST00000588907 XRN1Q8IZH2 1706 aaKnown RBP23.97■■□□□ 1.43
SCAMP4-211ENST00000588907 CPS1P31327 1500 aa23.96■■□□□ 1.43
SCAMP4-211ENST00000588907 PTCH1Q13635 1447 aa23.96■■□□□ 1.43
SCAMP4-211ENST00000588907 NKTRP30414 1462 aaKnown RBP23.94■■□□□ 1.42
SCAMP4-211ENST00000588907 USP47Q96K76 1375 aa23.94■■□□□ 1.42
SCAMP4-211ENST00000588907 KCNA6P17658 529 aa23.94■■□□□ 1.42
SCAMP4-211ENST00000588907 SIRT1Q96EB6 747 aa23.94■■□□□ 1.42
SCAMP4-211ENST00000588907 FAM135BQ49AJ0 1406 aa23.93■■□□□ 1.42
SCAMP4-211ENST00000588907 EIF4G2P78344 907 aaKnown RBP eCLIP23.93■■□□□ 1.42
SCAMP4-211ENST00000588907 ARHGEF28Q8N1W1 1705 aaKnown RBP23.93■■□□□ 1.42
SCAMP4-211ENST00000588907 AMOTL2Q9Y2J4 779 aa23.92■■□□□ 1.42
SCAMP4-211ENST00000588907 PTPRUQ92729 1446 aa23.92■■□□□ 1.42
SCAMP4-211ENST00000588907 SLC24A1O60721 1099 aa23.91■■□□□ 1.42
SCAMP4-211ENST00000588907 TRAK1Q9UPV9 953 aa23.9■■□□□ 1.42
SCAMP4-211ENST00000588907 STK26Q9P289 416 aa23.89■■□□□ 1.41
SCAMP4-211ENST00000588907 SBNO2Q9Y2G9 1366 aa23.86■■□□□ 1.41
SCAMP4-211ENST00000588907 CENPJQ9HC77 1338 aaPredicted RBP23.85■■□□□ 1.41
SCAMP4-211ENST00000588907 ROBO2Q9HCK4 1378 aa23.84■■□□□ 1.41
SCAMP4-211ENST00000588907 POGKQ9P215 609 aa23.84■■□□□ 1.41
SCAMP4-211ENST00000588907 NCOA3Q9Y6Q9 1424 aa23.83■■□□□ 1.4
SCAMP4-211ENST00000588907 QRICH2Q9H0J4 1663 aa23.83■■□□□ 1.4
SCAMP4-211ENST00000588907 PRAM1Q96QH2 718 aa23.82■■□□□ 1.4
SCAMP4-211ENST00000588907 HSPA5P11021 654 aaKnown RBP23.81■■□□□ 1.4
SCAMP4-211ENST00000588907 STRCP1A6NGW2 1772 aa23.8■■□□□ 1.4
SCAMP4-211ENST00000588907 ST20-MTHFSA0A0A6YYL1 179 aa23.8■■□□□ 1.4
SCAMP4-211ENST00000588907 ZNF335Q9H4Z2 1342 aaPredicted RBP23.8■■□□□ 1.4
SCAMP4-211ENST00000588907 ADGRB2O60241 1585 aa23.77■■□□□ 1.4
SCAMP4-211ENST00000588907 PROSER2Q86WR7 435 aaPredicted RBP23.76■■□□□ 1.39
SCAMP4-211ENST00000588907 WAPLQ7Z5K2 1190 aa23.75■■□□□ 1.39
SCAMP4-211ENST00000588907 PLEKHH1Q9ULM0 1364 aa23.75■■□□□ 1.39
SCAMP4-211ENST00000588907 ADGRL3Q9HAR2 1447 aa23.74■■□□□ 1.39
SCAMP4-211ENST00000588907 TMF1P82094 1093 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms