RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 NEURL4Q96JN8 1562 aa15.58■□□□□ 0.08
SMARCA4-213ENST00000587988 STRCQ7RTU9 1775 aa15.57■□□□□ 0.08
SMARCA4-213ENST00000587988 TXNDC2Q86VQ3 553 aa15.57■□□□□ 0.08
SMARCA4-213ENST00000587988 ANKLE2Q86XL3 938 aa15.56■□□□□ 0.08
SMARCA4-213ENST00000587988 NEXMIFQ5QGS0 1516 aa15.56■□□□□ 0.08
SMARCA4-213ENST00000587988 CLSPNQ9HAW4 1339 aa15.55■□□□□ 0.08
SMARCA4-213ENST00000587988 SCAF11Q99590 1463 aaKnown RBP15.54■□□□□ 0.08
SMARCA4-213ENST00000587988 RPGRIP1LQ68CZ1 1315 aa15.54■□□□□ 0.08
SMARCA4-213ENST00000587988 SENP3Q9H4L4 574 aaPredicted RBP15.54■□□□□ 0.08
SMARCA4-213ENST00000587988 EID1Q9Y6B2 187 aa15.54■□□□□ 0.08
SMARCA4-213ENST00000587988 PPLO60437 1756 aa15.54■□□□□ 0.08
SMARCA4-213ENST00000587988 POLR1AO95602 1720 aaPredicted RBP15.54■□□□□ 0.08
SMARCA4-213ENST00000587988 IFT172Q9UG01 1749 aa15.53■□□□□ 0.08
SMARCA4-213ENST00000587988 HDGFP51858 240 aaKnown RBP15.52■□□□□ 0.08
SMARCA4-213ENST00000587988 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.52■□□□□ 0.08
SMARCA4-213ENST00000587988 PPP1R15AO75807 674 aaPredicted RBP15.51■□□□□ 0.07
SMARCA4-213ENST00000587988 DCAF11Q8TEB1 546 aa15.51■□□□□ 0.07
SMARCA4-213ENST00000587988 L3MBTL2Q969R5 705 aa15.51■□□□□ 0.07
SMARCA4-213ENST00000587988 KDM2AQ9Y2K7 1162 aa15.51■□□□□ 0.07
SMARCA4-213ENST00000587988 ADGRF5Q8IZF2 1346 aa15.5■□□□□ 0.07
SMARCA4-213ENST00000587988 VGFO15240 615 aaPredicted RBP15.5■□□□□ 0.07
SMARCA4-213ENST00000587988 MED14O60244 1454 aa15.5■□□□□ 0.07
SMARCA4-213ENST00000587988 NPHP4O75161 1426 aaPredicted RBP15.5■□□□□ 0.07
SMARCA4-213ENST00000587988 PLEKHG1Q9ULL1 1385 aa15.49■□□□□ 0.07
SMARCA4-213ENST00000587988 IQGAP1P46940 1657 aa15.48■□□□□ 0.07
SMARCA4-213ENST00000587988 TONSLQ96HA7 1378 aa15.47■□□□□ 0.07
SMARCA4-213ENST00000587988 MYOM2P54296 1465 aa15.46■□□□□ 0.07
SMARCA4-213ENST00000587988 BCANQ96GW7 911 aa15.46■□□□□ 0.07
SMARCA4-213ENST00000587988 NRXN3Q9Y4C0 1643 aa15.46■□□□□ 0.06
SMARCA4-213ENST00000587988 SLC26A8Q96RN1 970 aa15.45■□□□□ 0.06
SMARCA4-213ENST00000587988 NRXN1Q9ULB1 1477 aa15.45■□□□□ 0.06
SMARCA4-213ENST00000587988 ADAMTS13Q76LX8 1427 aa15.44■□□□□ 0.06
SMARCA4-213ENST00000587988 SETBP1Q9Y6X0 1596 aa15.44■□□□□ 0.06
SMARCA4-213ENST00000587988 PIK3C2GO75747 1445 aa15.43■□□□□ 0.06
SMARCA4-213ENST00000587988 STAC3Q96MF2 364 aa15.43■□□□□ 0.06
SMARCA4-213ENST00000587988 DMRT2Q9Y5R5 561 aa15.43■□□□□ 0.06
SMARCA4-213ENST00000587988 CFAP70Q5T0N1 1121 aa15.41■□□□□ 0.06
SMARCA4-213ENST00000587988 TBX22Q9Y458 520 aa15.41■□□□□ 0.06
SMARCA4-213ENST00000587988 ALKQ9UM73 1620 aa15.41■□□□□ 0.06
SMARCA4-213ENST00000587988 PRAG1Q86YV5 1406 aa15.41■□□□□ 0.06
SMARCA4-213ENST00000587988 SETD1AO15047 1707 aaKnown RBP15.4■□□□□ 0.06
SMARCA4-213ENST00000587988 NBPF8Q3BBV2 869 aa15.4■□□□□ 0.06
SMARCA4-213ENST00000587988 C14orf93Q9H972 538 aaKnown RBP15.4■□□□□ 0.06
SMARCA4-213ENST00000587988 TIMELESSQ9UNS1 1208 aa15.39■□□□□ 0.05
SMARCA4-213ENST00000587988 METP08581 1390 aa15.38■□□□□ 0.05
SMARCA4-213ENST00000587988 DIP2AQ14689 1571 aa15.38■□□□□ 0.05
SMARCA4-213ENST00000587988 TMEM132EQ6IEE7 984 aa15.37■□□□□ 0.05
SMARCA4-213ENST00000587988 ZNF335Q9H4Z2 1342 aaPredicted RBP15.37■□□□□ 0.05
SMARCA4-213ENST00000587988 PTPRUQ92729 1446 aa15.36■□□□□ 0.05
SMARCA4-213ENST00000587988 ASXL1Q8IXJ9 1541 aa15.36■□□□□ 0.05
SMARCA4-213ENST00000587988 STRCP1A6NGW2 1772 aa15.35■□□□□ 0.05
SMARCA4-213ENST00000587988 NBPF1Q3BBV0 1214 aa15.35■□□□□ 0.05
SMARCA4-213ENST00000587988 CHD2O14647 1828 aaKnown RBP15.34■□□□□ 0.05
SMARCA4-213ENST00000587988 LAMC1P11047 1609 aa15.34■□□□□ 0.05
SMARCA4-213ENST00000587988 TRPM1Q7Z4N2 1603 aa15.33■□□□□ 0.04
SMARCA4-213ENST00000587988 KCNA6P17658 529 aa15.33■□□□□ 0.04
SMARCA4-213ENST00000587988 KIAA1210Q9ULL0 1709 aa15.33■□□□□ 0.04
SMARCA4-213ENST00000587988 PIK3R4Q99570 1358 aa15.33■□□□□ 0.04
SMARCA4-213ENST00000587988 AMOTL2Q9Y2J4 779 aa15.32■□□□□ 0.04
SMARCA4-213ENST00000587988 ADGRB1O14514 1584 aa15.32■□□□□ 0.04
SMARCA4-213ENST00000587988 NWD1Q149M9 1564 aa15.3■□□□□ 0.04
SMARCA4-213ENST00000587988 LTBP4Q8N2S1 1624 aa15.3■□□□□ 0.04
SMARCA4-213ENST00000587988 STK26Q9P289 416 aa15.3■□□□□ 0.04
SMARCA4-213ENST00000587988 XRN1Q8IZH2 1706 aaKnown RBP15.29■□□□□ 0.04
SMARCA4-213ENST00000587988 YTHDC2Q9H6S0 1430 aaKnown RBP15.29■□□□□ 0.04
SMARCA4-213ENST00000587988 LRPPRCP42704 1394 aaKnown RBP15.29■□□□□ 0.04
SMARCA4-213ENST00000587988 ROCK2O75116 1388 aaKnown RBP15.28■□□□□ 0.04
SMARCA4-213ENST00000587988 RALGAPBQ86X10 1494 aa15.27■□□□□ 0.04
SMARCA4-213ENST00000587988 RBM33Q96EV2 1170 aaKnown RBP15.27■□□□□ 0.04
SMARCA4-213ENST00000587988 ABCC11Q96J66 1382 aa15.26■□□□□ 0.03
SMARCA4-213ENST00000587988 ROBO2Q9HCK4 1378 aa15.26■□□□□ 0.03
SMARCA4-213ENST00000587988 TRAK1Q9UPV9 953 aa15.26■□□□□ 0.03
SMARCA4-213ENST00000587988 GPRASP1Q5JY77 1395 aa15.25■□□□□ 0.03
SMARCA4-213ENST00000587988 PROSER2Q86WR7 435 aaPredicted RBP15.25■□□□□ 0.03
SMARCA4-213ENST00000587988 KNDC1Q76NI1 1749 aa15.25■□□□□ 0.03
SMARCA4-213ENST00000587988 NKTRP30414 1462 aaKnown RBP15.25■□□□□ 0.03
SMARCA4-213ENST00000587988 CPS1P31327 1500 aa15.24■□□□□ 0.03
SMARCA4-213ENST00000587988 LRRC7Q96NW7 1537 aa15.24■□□□□ 0.03
SMARCA4-213ENST00000587988 WAPLQ7Z5K2 1190 aa15.24■□□□□ 0.03
SMARCA4-213ENST00000587988 CARD11Q9BXL7 1154 aa15.24■□□□□ 0.03
SMARCA4-213ENST00000587988 TECPR2O15040 1411 aa15.24■□□□□ 0.03
SMARCA4-213ENST00000587988 PLEKHH1Q9ULM0 1364 aa15.24■□□□□ 0.03
SMARCA4-213ENST00000587988 PTCH1Q13635 1447 aa15.23■□□□□ 0.03
SMARCA4-213ENST00000587988 XIRP1Q702N8 1843 aaKnown RBP15.22■□□□□ 0.03
SMARCA4-213ENST00000587988 TMEM94Q12767 1356 aa15.22■□□□□ 0.03
SMARCA4-213ENST00000587988 DLC1Q96QB1 1528 aa15.22■□□□□ 0.03
SMARCA4-213ENST00000587988 ARHGEF28Q8N1W1 1705 aaKnown RBP15.21■□□□□ 0.03
SMARCA4-213ENST00000587988 SIRT1Q96EB6 747 aa15.21■□□□□ 0.03
SMARCA4-213ENST00000587988 PRAM1Q96QH2 718 aa15.21■□□□□ 0.03
SMARCA4-213ENST00000587988 SAFB2Q14151 953 aaKnown RBP eCLIP15.2■□□□□ 0.02
SMARCA4-213ENST00000587988 FAM135BQ49AJ0 1406 aa15.19■□□□□ 0.02
SMARCA4-213ENST00000587988 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.18■□□□□ 0.02
SMARCA4-213ENST00000587988 CERKQ8TCT0 537 aa15.18■□□□□ 0.02
SMARCA4-213ENST00000587988 POGKQ9P215 609 aa15.18■□□□□ 0.02
SMARCA4-213ENST00000587988 ZEB1P37275 1124 aaPredicted RBP15.16■□□□□ 0.02
SMARCA4-213ENST00000587988 NALCNQ8IZF0 1738 aa15.16■□□□□ 0.02
SMARCA4-213ENST00000587988 NCOA3Q9Y6Q9 1424 aa15.16■□□□□ 0.02
SMARCA4-213ENST00000587988 C14orf37Q86TY3 774 aa15.15■□□□□ 0.02
SMARCA4-213ENST00000587988 MINK1Q8N4C8 1332 aaPredicted RBP15.15■□□□□ 0.02
SMARCA4-213ENST00000587988 CENPJQ9HC77 1338 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 375.4 ms