RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 DAPK1P53355 1430 aa12.08□□□□□ -0.48
VMP1-204ENST00000587259 TMEM94Q12767 1356 aa12.07□□□□□ -0.48
VMP1-204ENST00000587259 ARHGAP31Q2M1Z3 1444 aa12.07□□□□□ -0.48
VMP1-204ENST00000587259 ERBINQ96RT1 1412 aa12.07□□□□□ -0.48
VMP1-204ENST00000587259 MAP3K1Q13233 1512 aa12.06□□□□□ -0.48
VMP1-204ENST00000587259 POTEAQ6S8J7 498 aa12.06□□□□□ -0.48
VMP1-204ENST00000587259 APLP2Q06481 763 aa12.05□□□□□ -0.48
VMP1-204ENST00000587259 FGD6Q6ZV73 1430 aa12.04□□□□□ -0.48
VMP1-204ENST00000587259 SAMD1Q6SPF0 538 aaPredicted RBP12.04□□□□□ -0.48
VMP1-204ENST00000587259 PROSER2Q86WR7 435 aaPredicted RBP12.04□□□□□ -0.48
VMP1-204ENST00000587259 EFCAB6Q5THR3 1501 aa12.04□□□□□ -0.48
VMP1-204ENST00000587259 KANK1Q14678 1352 aa12.04□□□□□ -0.48
VMP1-204ENST00000587259 ABCB7O75027 752 aa12.03□□□□□ -0.48
VMP1-204ENST00000587259 BCANQ96GW7 911 aa12.03□□□□□ -0.48
VMP1-204ENST00000587259 KCNA6P17658 529 aa12.02□□□□□ -0.49
VMP1-204ENST00000587259 TET3O43151 1660 aa12.02□□□□□ -0.49
VMP1-204ENST00000587259 ROBO1Q9Y6N7 1651 aa12.02□□□□□ -0.49
VMP1-204ENST00000587259 FAM135BQ49AJ0 1406 aa12.02□□□□□ -0.49
VMP1-204ENST00000587259 NUTM2DQ5VT03 806 aaPredicted RBP12.01□□□□□ -0.49
VMP1-204ENST00000587259 ANKRD30AQ9BXX3 1397 aa12.01□□□□□ -0.49
VMP1-204ENST00000587259 MYCNP04198 464 aaPredicted RBP12□□□□□ -0.49
VMP1-204ENST00000587259 FAM50AQ14320 339 aaKnown RBP12□□□□□ -0.49
VMP1-204ENST00000587259 ZNF219Q9P2Y4 722 aaPredicted RBP12□□□□□ -0.49
VMP1-204ENST00000587259 NOS1P29475 1434 aa12□□□□□ -0.49
VMP1-204ENST00000587259 ADGRB3O60242 1522 aa12□□□□□ -0.49
VMP1-204ENST00000587259 LMTK2Q8IWU2 1503 aa12□□□□□ -0.49
VMP1-204ENST00000587259 CHGAP10645 457 aaKnown RBP11.97□□□□□ -0.49
VMP1-204ENST00000587259 MYO5BQ9ULV0 1848 aa11.97□□□□□ -0.49
VMP1-204ENST00000587259 SETD1AO15047 1707 aaKnown RBP11.97□□□□□ -0.49
VMP1-204ENST00000587259 NWD1Q149M9 1564 aa11.96□□□□□ -0.49
VMP1-204ENST00000587259 SLAIN2Q9P270 581 aa11.96□□□□□ -0.49
VMP1-204ENST00000587259 ZFYVE9O95405 1425 aa11.95□□□□□ -0.5
VMP1-204ENST00000587259 RIMS2Q9UQ26 1411 aa11.95□□□□□ -0.5
VMP1-204ENST00000587259 MSH6P52701 1360 aa11.95□□□□□ -0.5
VMP1-204ENST00000587259 PPP1R15AO75807 674 aaPredicted RBP11.95□□□□□ -0.5
VMP1-204ENST00000587259 KDM5AP29375 1690 aaKnown RBP11.94□□□□□ -0.5
VMP1-204ENST00000587259 GCC2Q8IWJ2 1684 aa11.94□□□□□ -0.5
VMP1-204ENST00000587259 FOXD4L1Q9NU39 408 aa11.94□□□□□ -0.5
VMP1-204ENST00000587259 ADGRL2O95490 1459 aa11.94□□□□□ -0.5
VMP1-204ENST00000587259 NKTRP30414 1462 aaKnown RBP11.94□□□□□ -0.5
VMP1-204ENST00000587259 PHLPP1O60346 1717 aa11.94□□□□□ -0.5
VMP1-204ENST00000587259 ANKRD50Q9ULJ7 1429 aa11.94□□□□□ -0.5
VMP1-204ENST00000587259 TRIM26Q12899 539 aaPredicted RBP11.93□□□□□ -0.5
VMP1-204ENST00000587259 SLC52A1Q9NWF4 448 aa11.93□□□□□ -0.5
VMP1-204ENST00000587259 LRP6O75581 1613 aa11.93□□□□□ -0.5
VMP1-204ENST00000587259 PLEKHG1Q9ULL1 1385 aa11.92□□□□□ -0.5
VMP1-204ENST00000587259 C14orf37Q86TY3 774 aa11.92□□□□□ -0.5
VMP1-204ENST00000587259 TMEM131LA2VDJ0 1609 aa11.92□□□□□ -0.5
VMP1-204ENST00000587259 CHD2O14647 1828 aaKnown RBP11.9□□□□□ -0.5
VMP1-204ENST00000587259 ADAMTS13Q76LX8 1427 aa11.9□□□□□ -0.5
VMP1-204ENST00000587259 PPARGC1BQ86YN6 1023 aaKnown RBP11.9□□□□□ -0.5
VMP1-204ENST00000587259 JCADQ9P266 1359 aa11.9□□□□□ -0.5
VMP1-204ENST00000587259 COL16A1Q07092 1604 aaPredicted RBP11.89□□□□□ -0.51
VMP1-204ENST00000587259 ITGAEP38570 1179 aa11.89□□□□□ -0.51
VMP1-204ENST00000587259 TRIM52Q96A61 297 aa11.89□□□□□ -0.51
VMP1-204ENST00000587259 RPRD2Q5VT52 1461 aaKnown RBP11.89□□□□□ -0.51
VMP1-204ENST00000587259 E9PCH4 1651 aa11.88□□□□□ -0.51
VMP1-204ENST00000587259 PTPRUQ92729 1446 aa11.88□□□□□ -0.51
VMP1-204ENST00000587259 NUTM2BA6NNL0 878 aaPredicted RBP11.87□□□□□ -0.51
VMP1-204ENST00000587259 NUTM2EB1AL46 878 aaPredicted RBP11.87□□□□□ -0.51
VMP1-204ENST00000587259 MEX3CQ5U5Q3 659 aaKnown RBP11.87□□□□□ -0.51
VMP1-204ENST00000587259 NUTM2AQ8IVF1 878 aaPredicted RBP11.87□□□□□ -0.51
VMP1-204ENST00000587259 TBX22Q9Y458 520 aa11.87□□□□□ -0.51
VMP1-204ENST00000587259 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.86□□□□□ -0.51
VMP1-204ENST00000587259 DDX17Q92841 729 aaKnown RBP11.86□□□□□ -0.51
VMP1-204ENST00000587259 AMOTL2Q9Y2J4 779 aa11.86□□□□□ -0.51
VMP1-204ENST00000587259 UNC13BO14795 1591 aa11.86□□□□□ -0.51
VMP1-204ENST00000587259 ZBTB22O15209 634 aa11.85□□□□□ -0.51
VMP1-204ENST00000587259 BRINP3Q76B58 766 aa11.85□□□□□ -0.51
VMP1-204ENST00000587259 ATF3P18847 181 aa11.84□□□□□ -0.51
VMP1-204ENST00000587259 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.84□□□□□ -0.51
VMP1-204ENST00000587259 NUP155O75694 1391 aa11.83□□□□□ -0.52
VMP1-204ENST00000587259 HDGFP51858 240 aaKnown RBP11.83□□□□□ -0.52
VMP1-204ENST00000587259 C19orf44Q9H6X5 657 aa11.83□□□□□ -0.52
VMP1-204ENST00000587259 CADPS2Q86UW7 1296 aa11.82□□□□□ -0.52
VMP1-204ENST00000587259 UPF1Q92900 1129 aaKnown RBP eCLIP11.82□□□□□ -0.52
VMP1-204ENST00000587259 SPATA31A6Q5VVP1 1343 aa11.82□□□□□ -0.52
VMP1-204ENST00000587259 AHDC1Q5TGY3 1603 aaPredicted RBP11.82□□□□□ -0.52
VMP1-204ENST00000587259 METP08581 1390 aa11.81□□□□□ -0.52
VMP1-204ENST00000587259 DIP2AQ14689 1571 aa11.81□□□□□ -0.52
VMP1-204ENST00000587259 PCGF6Q9BYE7 350 aa11.81□□□□□ -0.52
VMP1-204ENST00000587259 ATF5Q9Y2D1 282 aaPredicted RBP11.81□□□□□ -0.52
VMP1-204ENST00000587259 IQGAP3Q86VI3 1631 aa11.81□□□□□ -0.52
VMP1-204ENST00000587259 NRXN3Q9Y4C0 1643 aa11.81□□□□□ -0.52
VMP1-204ENST00000587259 TRPM2O94759 1503 aa11.81□□□□□ -0.52
VMP1-204ENST00000587259 NCOA3Q9Y6Q9 1424 aa11.8□□□□□ -0.52
VMP1-204ENST00000587259 POLA2Q14181 598 aa11.8□□□□□ -0.52
VMP1-204ENST00000587259 ZNF326Q5BKZ1 582 aaKnown RBP11.8□□□□□ -0.52
VMP1-204ENST00000587259 SHPRHQ149N8 1683 aa11.79□□□□□ -0.52
VMP1-204ENST00000587259 ZNF772Q68DY9 489 aaPredicted RBP11.79□□□□□ -0.52
VMP1-204ENST00000587259 POTEHQ6S545 545 aa11.79□□□□□ -0.52
VMP1-204ENST00000587259 ASXL1Q8IXJ9 1541 aa11.79□□□□□ -0.52
VMP1-204ENST00000587259 AFF2P51816 1311 aa11.79□□□□□ -0.52
VMP1-204ENST00000587259 MST1RQ04912 1400 aa11.78□□□□□ -0.52
VMP1-204ENST00000587259 RXRBP28702 533 aa11.78□□□□□ -0.52
VMP1-204ENST00000587259 ROCK1Q13464 1354 aa11.78□□□□□ -0.52
VMP1-204ENST00000587259 PIK3R4Q99570 1358 aa11.78□□□□□ -0.52
VMP1-204ENST00000587259 XRN1Q8IZH2 1706 aaKnown RBP11.77□□□□□ -0.52
VMP1-204ENST00000587259 C8orf37Q96NL8 207 aa11.77□□□□□ -0.53
VMP1-204ENST00000587259 SETBP1Q9Y6X0 1596 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms