RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 NUTM2DQ5VT03 806 aaPredicted RBP18.01■□□□□ 0.47
LIG3-207ENST00000586119 FAM135BQ49AJ0 1406 aa18■□□□□ 0.47
LIG3-207ENST00000586119 PPARGC1BQ86YN6 1023 aaKnown RBP18■□□□□ 0.47
LIG3-207ENST00000586119 CHGAP10645 457 aaKnown RBP17.99■□□□□ 0.47
LIG3-207ENST00000586119 ZFYVE9O95405 1425 aa17.98■□□□□ 0.47
LIG3-207ENST00000586119 GCC2Q8IWJ2 1684 aa17.97■□□□□ 0.47
LIG3-207ENST00000586119 RIMS2Q9UQ26 1411 aa17.97■□□□□ 0.47
LIG3-207ENST00000586119 ROBO1Q9Y6N7 1651 aa17.96■□□□□ 0.47
LIG3-207ENST00000586119 ITGAEP38570 1179 aa17.96■□□□□ 0.47
LIG3-207ENST00000586119 TMEM131LA2VDJ0 1609 aa17.96■□□□□ 0.47
LIG3-207ENST00000586119 CHD2O14647 1828 aaKnown RBP17.95■□□□□ 0.46
LIG3-207ENST00000586119 RPRD2Q5VT52 1461 aaKnown RBP17.95■□□□□ 0.46
LIG3-207ENST00000586119 PPP1R15AO75807 674 aaPredicted RBP17.94■□□□□ 0.46
LIG3-207ENST00000586119 POTEAQ6S8J7 498 aa17.94■□□□□ 0.46
LIG3-207ENST00000586119 NWD1Q149M9 1564 aa17.94■□□□□ 0.46
LIG3-207ENST00000586119 E9PCH4 1651 aa17.93■□□□□ 0.46
LIG3-207ENST00000586119 PLEKHG1Q9ULL1 1385 aa17.93■□□□□ 0.46
LIG3-207ENST00000586119 SLAIN2Q9P270 581 aa17.93■□□□□ 0.46
LIG3-207ENST00000586119 UNC13BO14795 1591 aa17.91■□□□□ 0.46
LIG3-207ENST00000586119 TBX22Q9Y458 520 aa17.91■□□□□ 0.46
LIG3-207ENST00000586119 MSH6P52701 1360 aa17.91■□□□□ 0.46
LIG3-207ENST00000586119 NKTRP30414 1462 aaKnown RBP17.9■□□□□ 0.46
LIG3-207ENST00000586119 HDGFP51858 240 aaKnown RBP17.89■□□□□ 0.45
LIG3-207ENST00000586119 ADAMTS13Q76LX8 1427 aa17.89■□□□□ 0.45
LIG3-207ENST00000586119 NUP155O75694 1391 aa17.88■□□□□ 0.45
LIG3-207ENST00000586119 ROCK1Q13464 1354 aa17.87■□□□□ 0.45
LIG3-207ENST00000586119 PHLPP1O60346 1717 aa17.86■□□□□ 0.45
LIG3-207ENST00000586119 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.86■□□□□ 0.45
LIG3-207ENST00000586119 IQGAP3Q86VI3 1631 aa17.86■□□□□ 0.45
LIG3-207ENST00000586119 C14orf37Q86TY3 774 aa17.85■□□□□ 0.45
LIG3-207ENST00000586119 PTPRUQ92729 1446 aa17.84■□□□□ 0.45
LIG3-207ENST00000586119 AMOTL2Q9Y2J4 779 aa17.83■□□□□ 0.44
LIG3-207ENST00000586119 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.82■□□□□ 0.44
LIG3-207ENST00000586119 C19orf44Q9H6X5 657 aa17.8■□□□□ 0.44
LIG3-207ENST00000586119 JCADQ9P266 1359 aa17.79■□□□□ 0.44
LIG3-207ENST00000586119 COL16A1Q07092 1604 aaPredicted RBP17.79■□□□□ 0.44
LIG3-207ENST00000586119 NCOA3Q9Y6Q9 1424 aa17.78■□□□□ 0.44
LIG3-207ENST00000586119 ATF3P18847 181 aa17.77■□□□□ 0.44
LIG3-207ENST00000586119 CADPS2Q86UW7 1296 aa17.77■□□□□ 0.44
LIG3-207ENST00000586119 LRP6O75581 1613 aa17.76■□□□□ 0.43
LIG3-207ENST00000586119 NRXN3Q9Y4C0 1643 aa17.76■□□□□ 0.43
LIG3-207ENST00000586119 ZNF326Q5BKZ1 582 aaKnown RBP17.76■□□□□ 0.43
LIG3-207ENST00000586119 PIK3R4Q99570 1358 aa17.76■□□□□ 0.43
LIG3-207ENST00000586119 SETD1AO15047 1707 aaKnown RBP17.75■□□□□ 0.43
LIG3-207ENST00000586119 DIP2AQ14689 1571 aa17.75■□□□□ 0.43
LIG3-207ENST00000586119 BRINP3Q76B58 766 aa17.75■□□□□ 0.43
LIG3-207ENST00000586119 METP08581 1390 aa17.75■□□□□ 0.43
LIG3-207ENST00000586119 SPHKAPQ2M3C7 1700 aa17.75■□□□□ 0.43
LIG3-207ENST00000586119 TRPM2O94759 1503 aa17.74■□□□□ 0.43
LIG3-207ENST00000586119 DDX17Q92841 729 aaKnown RBP17.72■□□□□ 0.43
LIG3-207ENST00000586119 CLTCL1P53675 1640 aa17.7■□□□□ 0.42
LIG3-207ENST00000586119 AHDC1Q5TGY3 1603 aaPredicted RBP17.7■□□□□ 0.42
LIG3-207ENST00000586119 NUTM2BA6NNL0 878 aaPredicted RBP17.7■□□□□ 0.42
LIG3-207ENST00000586119 NUTM2EB1AL46 878 aaPredicted RBP17.7■□□□□ 0.42
LIG3-207ENST00000586119 MEX3CQ5U5Q3 659 aaKnown RBP17.7■□□□□ 0.42
LIG3-207ENST00000586119 NUTM2AQ8IVF1 878 aaPredicted RBP17.7■□□□□ 0.42
LIG3-207ENST00000586119 XRN1Q8IZH2 1706 aaKnown RBP17.69■□□□□ 0.42
LIG3-207ENST00000586119 SETBP1Q9Y6X0 1596 aa17.69■□□□□ 0.42
LIG3-207ENST00000586119 SPATA31A6Q5VVP1 1343 aa17.69■□□□□ 0.42
LIG3-207ENST00000586119 MST1RQ04912 1400 aa17.67■□□□□ 0.42
LIG3-207ENST00000586119 TRIM52Q96A61 297 aa17.67■□□□□ 0.42
LIG3-207ENST00000586119 NEXMIFQ5QGS0 1516 aa17.67■□□□□ 0.42
LIG3-207ENST00000586119 NAIPQ13075 1403 aa17.66■□□□□ 0.42
LIG3-207ENST00000586119 SHPRHQ149N8 1683 aa17.66■□□□□ 0.42
LIG3-207ENST00000586119 ASXL1Q8IXJ9 1541 aa17.64■□□□□ 0.41
LIG3-207ENST00000586119 KIF1BO60333 1816 aa17.64■□□□□ 0.41
LIG3-207ENST00000586119 RRBP1Q9P2E9 1410 aaKnown RBP17.64■□□□□ 0.41
LIG3-207ENST00000586119 ZNF772Q68DY9 489 aaPredicted RBP17.63■□□□□ 0.41
LIG3-207ENST00000586119 DCCP43146 1447 aa17.62■□□□□ 0.41
LIG3-207ENST00000586119 NALCNQ8IZF0 1738 aa17.61■□□□□ 0.41
LIG3-207ENST00000586119 FOXD1Q16676 465 aa17.61■□□□□ 0.41
LIG3-207ENST00000586119 NHSL1Q5SYE7 1610 aa17.61■□□□□ 0.41
LIG3-207ENST00000586119 UPF1Q92900 1129 aaKnown RBP eCLIP17.6■□□□□ 0.41
LIG3-207ENST00000586119 SETD5Q9C0A6 1442 aa17.6■□□□□ 0.41
LIG3-207ENST00000586119 ADGRL3Q9HAR2 1447 aa17.59■□□□□ 0.41
LIG3-207ENST00000586119 AFF2P51816 1311 aa17.59■□□□□ 0.41
LIG3-207ENST00000586119 RXRBP28702 533 aa17.59■□□□□ 0.41
LIG3-207ENST00000586119 LRRC59Q96AG4 307 aaKnown RBP17.59■□□□□ 0.41
LIG3-207ENST00000586119 ORAI2Q96SN7 254 aa17.59■□□□□ 0.41
LIG3-207ENST00000586119 ROBO2Q9HCK4 1378 aa17.58■□□□□ 0.4
LIG3-207ENST00000586119 C8orf37Q96NL8 207 aa17.57■□□□□ 0.4
LIG3-207ENST00000586119 SLC4A1APQ9BWU0 796 aaKnown RBP17.57■□□□□ 0.4
LIG3-207ENST00000586119 C1orf167Q5SNV9 1468 aa17.56■□□□□ 0.4
LIG3-207ENST00000586119 PNPLA6Q8IY17 1366 aa17.56■□□□□ 0.4
LIG3-207ENST00000586119 VGFO15240 615 aaPredicted RBP17.56■□□□□ 0.4
LIG3-207ENST00000586119 ADAMTS2O95450 1211 aa17.54■□□□□ 0.4
LIG3-207ENST00000586119 QTRT2Q9H974 415 aaKnown RBP17.53■□□□□ 0.4
LIG3-207ENST00000586119 PPLO60437 1756 aa17.52■□□□□ 0.4
LIG3-207ENST00000586119 HFM1A2PYH4 1435 aa17.52■□□□□ 0.4
LIG3-207ENST00000586119 ADGRF5Q8IZF2 1346 aa17.51■□□□□ 0.39
LIG3-207ENST00000586119 RPGRIP1LQ68CZ1 1315 aa17.5■□□□□ 0.39
LIG3-207ENST00000586119 RGL3Q3MIN7 710 aa17.5■□□□□ 0.39
LIG3-207ENST00000586119 SOS2Q07890 1332 aaPredicted RBP17.49■□□□□ 0.39
LIG3-207ENST00000586119 PTCH1Q13635 1447 aa17.49■□□□□ 0.39
LIG3-207ENST00000586119 NGLY1Q96IV0 654 aa17.49■□□□□ 0.39
LIG3-207ENST00000586119 WAPLQ7Z5K2 1190 aa17.48■□□□□ 0.39
LIG3-207ENST00000586119 STK26Q9P289 416 aa17.48■□□□□ 0.39
LIG3-207ENST00000586119 NUTM2FA1L443 756 aa17.47■□□□□ 0.39
LIG3-207ENST00000586119 RGS12O14924 1447 aa17.47■□□□□ 0.39
LIG3-207ENST00000586119 RBM6P78332 1123 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms