RNA–Protein interactions for RNA: ENST00000584887.1

TOP3A-219, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 545 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-219ENST00000584887 IQGAP3Q86VI3 1631 aa31.17■■■□□ 2.58
TOP3A-219ENST00000584887 E9PCH4 1651 aa31.17■■■□□ 2.58
TOP3A-219ENST00000584887 RIMS2Q9UQ26 1411 aa31.15■■■□□ 2.58
TOP3A-219ENST00000584887 KCNA6P17658 529 aa31.15■■■□□ 2.58
TOP3A-219ENST00000584887 XIRP1Q702N8 1843 aaKnown RBP31.13■■■□□ 2.57
TOP3A-219ENST00000584887 TMEM94Q12767 1356 aa31.13■■■□□ 2.57
TOP3A-219ENST00000584887 ZFYVE9O95405 1425 aa31.13■■■□□ 2.57
TOP3A-219ENST00000584887 TMEM131LA2VDJ0 1609 aa31.13■■■□□ 2.57
TOP3A-219ENST00000584887 PROSER2Q86WR7 435 aaPredicted RBP31.12■■■□□ 2.57
TOP3A-219ENST00000584887 HDGFP51858 240 aaKnown RBP31.11■■■□□ 2.57
TOP3A-219ENST00000584887 MED1Q15648 1581 aaPredicted RBP31.11■■■□□ 2.57
TOP3A-219ENST00000584887 RBM33Q96EV2 1170 aaKnown RBP31.1■■■□□ 2.57
TOP3A-219ENST00000584887 PLEKHG1Q9ULL1 1385 aa31.09■■■□□ 2.57
TOP3A-219ENST00000584887 SOCS7O14512 581 aa31.09■■■□□ 2.57
TOP3A-219ENST00000584887 NUTM2DQ5VT03 806 aaPredicted RBP31.07■■■□□ 2.56
TOP3A-219ENST00000584887 NKTRP30414 1462 aaKnown RBP31.04■■■□□ 2.56
TOP3A-219ENST00000584887 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.04■■■□□ 2.56
TOP3A-219ENST00000584887 NWD1Q149M9 1564 aa31.04■■■□□ 2.56
TOP3A-219ENST00000584887 RRBP1Q9P2E9 1410 aaKnown RBP31.03■■■□□ 2.56
TOP3A-219ENST00000584887 PHF23Q9BUL5 403 aaPredicted RBP30.98■■■□□ 2.55
TOP3A-219ENST00000584887 MSH6P52701 1360 aa30.95■■■□□ 2.55
TOP3A-219ENST00000584887 TBX22Q9Y458 520 aa30.95■■■□□ 2.55
TOP3A-219ENST00000584887 SPHKAPQ2M3C7 1700 aa30.93■■■□□ 2.54
TOP3A-219ENST00000584887 FAM135BQ49AJ0 1406 aa30.93■■■□□ 2.54
TOP3A-219ENST00000584887 CHD2O14647 1828 aaKnown RBP30.93■■■□□ 2.54
TOP3A-219ENST00000584887 ADAMTS13Q76LX8 1427 aa30.91■■■□□ 2.54
TOP3A-219ENST00000584887 NAIPQ13075 1403 aa30.9■■■□□ 2.54
TOP3A-219ENST00000584887 ZNF326Q5BKZ1 582 aaKnown RBP30.9■■■□□ 2.54
TOP3A-219ENST00000584887 C14orf37Q86TY3 774 aa30.9■■■□□ 2.54
TOP3A-219ENST00000584887 DIP2AQ14689 1571 aa30.88■■■□□ 2.53
TOP3A-219ENST00000584887 ROBO1Q9Y6N7 1651 aa30.88■■■□□ 2.53
TOP3A-219ENST00000584887 TRIM52Q96A61 297 aa30.86■■■□□ 2.53
TOP3A-219ENST00000584887 TRPM2O94759 1503 aa30.83■■■□□ 2.53
TOP3A-219ENST00000584887 PIK3R4Q99570 1358 aa30.82■■■□□ 2.52
TOP3A-219ENST00000584887 SLAIN2Q9P270 581 aa30.82■■■□□ 2.52
TOP3A-219ENST00000584887 CLTCL1P53675 1640 aa30.8■■■□□ 2.52
TOP3A-219ENST00000584887 HFM1A2PYH4 1435 aa30.8■■■□□ 2.52
TOP3A-219ENST00000584887 AMOTL2Q9Y2J4 779 aa30.78■■■□□ 2.52
TOP3A-219ENST00000584887 PTPRUQ92729 1446 aa30.76■■■□□ 2.51
TOP3A-219ENST00000584887 NCOA3Q9Y6Q9 1424 aa30.76■■■□□ 2.51
TOP3A-219ENST00000584887 SETBP1Q9Y6X0 1596 aa30.74■■■□□ 2.51
TOP3A-219ENST00000584887 NRXN3Q9Y4C0 1643 aa30.73■■■□□ 2.51
TOP3A-219ENST00000584887 ATF3P18847 181 aa30.73■■■□□ 2.51
TOP3A-219ENST00000584887 SLC4A1APQ9BWU0 796 aaKnown RBP30.72■■■□□ 2.51
TOP3A-219ENST00000584887 PHLPP1O60346 1717 aa30.71■■■□□ 2.51
TOP3A-219ENST00000584887 C19orf44Q9H6X5 657 aa30.71■■■□□ 2.51
TOP3A-219ENST00000584887 KIF1BO60333 1816 aa30.7■■■□□ 2.51
TOP3A-219ENST00000584887 NEXMIFQ5QGS0 1516 aa30.7■■■□□ 2.51
TOP3A-219ENST00000584887 CADPS2Q86UW7 1296 aa30.7■■■□□ 2.51
TOP3A-219ENST00000584887 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.7■■■□□ 2.5
TOP3A-219ENST00000584887 METP08581 1390 aa30.67■■■□□ 2.5
TOP3A-219ENST00000584887 XRN1Q8IZH2 1706 aaKnown RBP30.66■■■□□ 2.5
TOP3A-219ENST00000584887 RGS17Q9UGC6 210 aaPredicted RBP30.63■■■□□ 2.49
TOP3A-219ENST00000584887 JCADQ9P266 1359 aa30.62■■■□□ 2.49
TOP3A-219ENST00000584887 FOXD1Q16676 465 aa30.6■■■□□ 2.49
TOP3A-219ENST00000584887 COL16A1Q07092 1604 aaPredicted RBP30.58■■■□□ 2.49
TOP3A-219ENST00000584887 VGFO15240 615 aaPredicted RBP30.57■■■□□ 2.48
TOP3A-219ENST00000584887 DCCP43146 1447 aa30.56■■■□□ 2.48
TOP3A-219ENST00000584887 BRINP3Q76B58 766 aa30.54■■■□□ 2.48
TOP3A-219ENST00000584887 AHDC1Q5TGY3 1603 aaPredicted RBP30.53■■■□□ 2.48
TOP3A-219ENST00000584887 RPGRIP1LQ68CZ1 1315 aa30.52■■■□□ 2.48
TOP3A-219ENST00000584887 ADGRL3Q9HAR2 1447 aa30.51■■■□□ 2.47
TOP3A-219ENST00000584887 POTEAQ6S8J7 498 aa30.5■■■□□ 2.47
TOP3A-219ENST00000584887 MST1RQ04912 1400 aa30.49■■■□□ 2.47
TOP3A-219ENST00000584887 CCDC144AA2RUR9 1427 aa30.48■■■□□ 2.47
TOP3A-219ENST00000584887 ASXL1Q8IXJ9 1541 aa30.47■■■□□ 2.47
TOP3A-219ENST00000584887 PPLO60437 1756 aa30.47■■■□□ 2.47
TOP3A-219ENST00000584887 MEX3CQ5U5Q3 659 aaKnown RBP30.47■■■□□ 2.47
TOP3A-219ENST00000584887 MPHOSPH9Q99550 1183 aa30.47■■■□□ 2.47
TOP3A-219ENST00000584887 NALCNQ8IZF0 1738 aa30.46■■■□□ 2.47
TOP3A-219ENST00000584887 SPATA31A6Q5VVP1 1343 aa30.45■■■□□ 2.46
TOP3A-219ENST00000584887 SETD1AO15047 1707 aaKnown RBP30.44■■■□□ 2.46
TOP3A-219ENST00000584887 RGL3Q3MIN7 710 aa30.44■■■□□ 2.46
TOP3A-219ENST00000584887 PTCH1Q13635 1447 aa30.43■■■□□ 2.46
TOP3A-219ENST00000584887 LRP6O75581 1613 aa30.43■■■□□ 2.46
TOP3A-219ENST00000584887 ROBO2Q9HCK4 1378 aa30.42■■■□□ 2.46
TOP3A-219ENST00000584887 SHPRHQ149N8 1683 aa30.4■■■□□ 2.46
TOP3A-219ENST00000584887 NUTM2BA6NNL0 878 aaPredicted RBP30.39■■■□□ 2.46
TOP3A-219ENST00000584887 NUTM2EB1AL46 878 aaPredicted RBP30.39■■■□□ 2.46
TOP3A-219ENST00000584887 NUTM2AQ8IVF1 878 aaPredicted RBP30.39■■■□□ 2.46
TOP3A-219ENST00000584887 ADGRF5Q8IZF2 1346 aa30.38■■■□□ 2.45
TOP3A-219ENST00000584887 DDX17Q92841 729 aaKnown RBP30.37■■■□□ 2.45
TOP3A-219ENST00000584887 SPATA31E1Q6ZUB1 1445 aa30.35■■■□□ 2.45
TOP3A-219ENST00000584887 SETD5Q9C0A6 1442 aa30.35■■■□□ 2.45
TOP3A-219ENST00000584887 NHSL1Q5SYE7 1610 aa30.35■■■□□ 2.45
TOP3A-219ENST00000584887 C1orf167Q5SNV9 1468 aa30.34■■■□□ 2.45
TOP3A-219ENST00000584887 ANKRD30BQ9BXX2 1392 aa30.32■■■□□ 2.44
TOP3A-219ENST00000584887 PRAG1Q86YV5 1406 aa30.31■■■□□ 2.44
TOP3A-219ENST00000584887 LRRC59Q96AG4 307 aaKnown RBP30.31■■■□□ 2.44
TOP3A-219ENST00000584887 STK26Q9P289 416 aa30.31■■■□□ 2.44
TOP3A-219ENST00000584887 ZNF772Q68DY9 489 aaPredicted RBP30.28■■■□□ 2.44
TOP3A-219ENST00000584887 ACIN1Q9UKV3 1341 aaKnown RBP30.27■■■□□ 2.44
TOP3A-219ENST00000584887 ORAI2Q96SN7 254 aa30.27■■■□□ 2.44
TOP3A-219ENST00000584887 IFT172Q9UG01 1749 aa30.27■■■□□ 2.44
TOP3A-219ENST00000584887 RAB3GAP2Q9H2M9 1393 aa30.25■■■□□ 2.43
TOP3A-219ENST00000584887 TMEM132EQ6IEE7 984 aa30.24■■■□□ 2.43
TOP3A-219ENST00000584887 PNPLA6Q8IY17 1366 aa30.24■■■□□ 2.43
TOP3A-219ENST00000584887 LRPPRCP42704 1394 aaKnown RBP30.22■■■□□ 2.43
TOP3A-219ENST00000584887 PIK3C2GO75747 1445 aa30.22■■■□□ 2.43
TOP3A-219ENST00000584887 WAPLQ7Z5K2 1190 aa30.2■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms