RNA–Protein interactions for RNA: ENST00000583976.1

SKA2-209, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-209ENST00000583976 NKTRP30414 1462 aaKnown RBP24.2■■□□□ 1.47
SKA2-209ENST00000583976 RBM33Q96EV2 1170 aaKnown RBP24.2■■□□□ 1.46
SKA2-209ENST00000583976 ROBO1Q9Y6N7 1651 aa24.19■■□□□ 1.46
SKA2-209ENST00000583976 IQGAP3Q86VI3 1631 aa24.19■■□□□ 1.46
SKA2-209ENST00000583976 PHF23Q9BUL5 403 aaPredicted RBP24.17■■□□□ 1.46
SKA2-209ENST00000583976 RIMS2Q9UQ26 1411 aa24.16■■□□□ 1.46
SKA2-209ENST00000583976 SLC52A1Q9NWF4 448 aa24.15■■□□□ 1.46
SKA2-209ENST00000583976 KCNA6P17658 529 aa24.14■■□□□ 1.45
SKA2-209ENST00000583976 PLEKHG1Q9ULL1 1385 aa24.13■■□□□ 1.45
SKA2-209ENST00000583976 ROCK1Q13464 1354 aa24.12■■□□□ 1.45
SKA2-209ENST00000583976 CHD2O14647 1828 aaKnown RBP24.12■■□□□ 1.45
SKA2-209ENST00000583976 FAM135BQ49AJ0 1406 aa24.1■■□□□ 1.45
SKA2-209ENST00000583976 PROSER2Q86WR7 435 aaPredicted RBP24.09■■□□□ 1.45
SKA2-209ENST00000583976 BCANQ96GW7 911 aa24.09■■□□□ 1.45
SKA2-209ENST00000583976 PPP1R15AO75807 674 aaPredicted RBP24.06■■□□□ 1.44
SKA2-209ENST00000583976 PPARGC1BQ86YN6 1023 aaKnown RBP24.06■■□□□ 1.44
SKA2-209ENST00000583976 ADAMTS13Q76LX8 1427 aa24.06■■□□□ 1.44
SKA2-209ENST00000583976 ITGAEP38570 1179 aa24.05■■□□□ 1.44
SKA2-209ENST00000583976 DIP2AQ14689 1571 aa24.04■■□□□ 1.44
SKA2-209ENST00000583976 CHGAP10645 457 aaKnown RBP24.04■■□□□ 1.44
SKA2-209ENST00000583976 NUTM2DQ5VT03 806 aaPredicted RBP24.04■■□□□ 1.44
SKA2-209ENST00000583976 SPHKAPQ2M3C7 1700 aa24.04■■□□□ 1.44
SKA2-209ENST00000583976 MSH6P52701 1360 aa24.03■■□□□ 1.44
SKA2-209ENST00000583976 PHLPP1O60346 1717 aa24.03■■□□□ 1.44
SKA2-209ENST00000583976 RGS17Q9UGC6 210 aaPredicted RBP24.02■■□□□ 1.44
SKA2-209ENST00000583976 NUP155O75694 1391 aa24.02■■□□□ 1.44
SKA2-209ENST00000583976 NRXN3Q9Y4C0 1643 aa24■■□□□ 1.43
SKA2-209ENST00000583976 COL16A1Q07092 1604 aaPredicted RBP23.99■■□□□ 1.43
SKA2-209ENST00000583976 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.96■■□□□ 1.43
SKA2-209ENST00000583976 TRPM2O94759 1503 aa23.96■■□□□ 1.43
SKA2-209ENST00000583976 XRN1Q8IZH2 1706 aaKnown RBP23.95■■□□□ 1.42
SKA2-209ENST00000583976 PTPRUQ92729 1446 aa23.94■■□□□ 1.42
SKA2-209ENST00000583976 CLTCL1P53675 1640 aa23.94■■□□□ 1.42
SKA2-209ENST00000583976 TBX22Q9Y458 520 aa23.93■■□□□ 1.42
SKA2-209ENST00000583976 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.92■■□□□ 1.42
SKA2-209ENST00000583976 SETBP1Q9Y6X0 1596 aa23.91■■□□□ 1.42
SKA2-209ENST00000583976 SLAIN2Q9P270 581 aa23.91■■□□□ 1.42
SKA2-209ENST00000583976 SETD1AO15047 1707 aaKnown RBP23.9■■□□□ 1.42
SKA2-209ENST00000583976 HDGFP51858 240 aaKnown RBP23.89■■□□□ 1.41
SKA2-209ENST00000583976 PIK3R4Q99570 1358 aa23.89■■□□□ 1.41
SKA2-209ENST00000583976 AHDC1Q5TGY3 1603 aaPredicted RBP23.88■■□□□ 1.41
SKA2-209ENST00000583976 LRP6O75581 1613 aa23.88■■□□□ 1.41
SKA2-209ENST00000583976 RRBP1Q9P2E9 1410 aaKnown RBP23.87■■□□□ 1.41
SKA2-209ENST00000583976 NCOA3Q9Y6Q9 1424 aa23.87■■□□□ 1.41
SKA2-209ENST00000583976 POTEAQ6S8J7 498 aa23.87■■□□□ 1.41
SKA2-209ENST00000583976 C14orf37Q86TY3 774 aa23.87■■□□□ 1.41
SKA2-209ENST00000583976 NEXMIFQ5QGS0 1516 aa23.87■■□□□ 1.41
SKA2-209ENST00000583976 JCADQ9P266 1359 aa23.86■■□□□ 1.41
SKA2-209ENST00000583976 NAIPQ13075 1403 aa23.84■■□□□ 1.41
SKA2-209ENST00000583976 SHPRHQ149N8 1683 aa23.83■■□□□ 1.4
SKA2-209ENST00000583976 NALCNQ8IZF0 1738 aa23.81■■□□□ 1.4
SKA2-209ENST00000583976 AMOTL2Q9Y2J4 779 aa23.81■■□□□ 1.4
SKA2-209ENST00000583976 METP08581 1390 aa23.8■■□□□ 1.4
SKA2-209ENST00000583976 ASXL1Q8IXJ9 1541 aa23.79■■□□□ 1.4
SKA2-209ENST00000583976 KIF1BO60333 1816 aa23.79■■□□□ 1.4
SKA2-209ENST00000583976 ZNF326Q5BKZ1 582 aaKnown RBP23.78■■□□□ 1.4
SKA2-209ENST00000583976 DCCP43146 1447 aa23.77■■□□□ 1.4
SKA2-209ENST00000583976 CADPS2Q86UW7 1296 aa23.77■■□□□ 1.4
SKA2-209ENST00000583976 C19orf44Q9H6X5 657 aa23.77■■□□□ 1.4
SKA2-209ENST00000583976 NHSL1Q5SYE7 1610 aa23.77■■□□□ 1.4
SKA2-209ENST00000583976 ATF3P18847 181 aa23.76■■□□□ 1.39
SKA2-209ENST00000583976 MST1RQ04912 1400 aa23.76■■□□□ 1.39
SKA2-209ENST00000583976 BRINP3Q76B58 766 aa23.74■■□□□ 1.39
SKA2-209ENST00000583976 ADGRL3Q9HAR2 1447 aa23.73■■□□□ 1.39
SKA2-209ENST00000583976 HFM1A2PYH4 1435 aa23.71■■□□□ 1.39
SKA2-209ENST00000583976 SPATA31A6Q5VVP1 1343 aa23.69■■□□□ 1.38
SKA2-209ENST00000583976 PPLO60437 1756 aa23.68■■□□□ 1.38
SKA2-209ENST00000583976 MEX3CQ5U5Q3 659 aaKnown RBP23.65■■□□□ 1.38
SKA2-209ENST00000583976 PTCH1Q13635 1447 aa23.65■■□□□ 1.38
SKA2-209ENST00000583976 DDX17Q92841 729 aaKnown RBP23.63■■□□□ 1.37
SKA2-209ENST00000583976 SETD5Q9C0A6 1442 aa23.63■■□□□ 1.37
SKA2-209ENST00000583976 TRIM52Q96A61 297 aa23.62■■□□□ 1.37
SKA2-209ENST00000583976 ROBO2Q9HCK4 1378 aa23.62■■□□□ 1.37
SKA2-209ENST00000583976 NUTM2BA6NNL0 878 aaPredicted RBP23.6■■□□□ 1.37
SKA2-209ENST00000583976 NUTM2EB1AL46 878 aaPredicted RBP23.6■■□□□ 1.37
SKA2-209ENST00000583976 NUTM2AQ8IVF1 878 aaPredicted RBP23.6■■□□□ 1.37
SKA2-209ENST00000583976 PRAG1Q86YV5 1406 aa23.59■■□□□ 1.37
SKA2-209ENST00000583976 C1orf167Q5SNV9 1468 aa23.58■■□□□ 1.37
SKA2-209ENST00000583976 LAMC1P11047 1609 aa23.58■■□□□ 1.36
SKA2-209ENST00000583976 PNPLA6Q8IY17 1366 aa23.57■■□□□ 1.36
SKA2-209ENST00000583976 SLC4A1APQ9BWU0 796 aaKnown RBP23.57■■□□□ 1.36
SKA2-209ENST00000583976 IFT172Q9UG01 1749 aa23.56■■□□□ 1.36
SKA2-209ENST00000583976 FOXD1Q16676 465 aa23.56■■□□□ 1.36
SKA2-209ENST00000583976 ZNF772Q68DY9 489 aaPredicted RBP23.54■■□□□ 1.36
SKA2-209ENST00000583976 AFF2P51816 1311 aa23.53■■□□□ 1.36
SKA2-209ENST00000583976 CDC42BPGQ6DT37 1551 aa23.52■■□□□ 1.36
SKA2-209ENST00000583976 VGFO15240 615 aaPredicted RBP23.5■■□□□ 1.35
SKA2-209ENST00000583976 CCDC144AA2RUR9 1427 aa23.48■■□□□ 1.35
SKA2-209ENST00000583976 SPATA31E1Q6ZUB1 1445 aa23.48■■□□□ 1.35
SKA2-209ENST00000583976 LRRC59Q96AG4 307 aaKnown RBP23.47■■□□□ 1.35
SKA2-209ENST00000583976 C8orf37Q96NL8 207 aa23.47■■□□□ 1.35
SKA2-209ENST00000583976 ORAI2Q96SN7 254 aa23.47■■□□□ 1.35
SKA2-209ENST00000583976 RPGRIP1LQ68CZ1 1315 aa23.47■■□□□ 1.35
SKA2-209ENST00000583976 RGS12O14924 1447 aa23.47■■□□□ 1.35
SKA2-209ENST00000583976 KNDC1Q76NI1 1749 aa23.46■■□□□ 1.35
SKA2-209ENST00000583976 ADGRF5Q8IZF2 1346 aa23.46■■□□□ 1.35
SKA2-209ENST00000583976 CDK12Q9NYV4 1490 aaPredicted RBP23.46■■□□□ 1.35
SKA2-209ENST00000583976 COL22A1Q8NFW1 1626 aaPredicted RBP23.44■■□□□ 1.34
SKA2-209ENST00000583976 RXRBP28702 533 aa23.43■■□□□ 1.34
SKA2-209ENST00000583976 SOS2Q07890 1332 aaPredicted RBP23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms