RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 TONSLQ96HA7 1378 aa15.79■□□□□ 0.12
TOP3A-216ENST00000583804 TMEM2Q9UHN6 1383 aa15.79■□□□□ 0.12
TOP3A-216ENST00000583804 RPGRIP1LQ68CZ1 1315 aa15.79■□□□□ 0.12
TOP3A-216ENST00000583804 PPP1R15AO75807 674 aaPredicted RBP15.78■□□□□ 0.12
TOP3A-216ENST00000583804 ZEB1P37275 1124 aaPredicted RBP15.78■□□□□ 0.12
TOP3A-216ENST00000583804 DCAF11Q8TEB1 546 aa15.78■□□□□ 0.12
TOP3A-216ENST00000583804 L3MBTL2Q969R5 705 aa15.78■□□□□ 0.12
TOP3A-216ENST00000583804 RIMS2Q9UQ26 1411 aa15.78■□□□□ 0.12
TOP3A-216ENST00000583804 ANKLE2Q86XL3 938 aa15.78■□□□□ 0.12
TOP3A-216ENST00000583804 MYO5BQ9ULV0 1848 aa15.77■□□□□ 0.12
TOP3A-216ENST00000583804 KDM5AP29375 1690 aaKnown RBP15.77■□□□□ 0.12
TOP3A-216ENST00000583804 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.77■□□□□ 0.11
TOP3A-216ENST00000583804 LTKP29376 864 aa15.76■□□□□ 0.11
TOP3A-216ENST00000583804 BCANQ96GW7 911 aa15.76■□□□□ 0.11
TOP3A-216ENST00000583804 NCKAP5LQ9HCH0 1330 aa15.75■□□□□ 0.11
TOP3A-216ENST00000583804 VGFO15240 615 aaPredicted RBP15.75■□□□□ 0.11
TOP3A-216ENST00000583804 NEURL4Q96JN8 1562 aa15.74■□□□□ 0.11
TOP3A-216ENST00000583804 ARHGAP23Q9P227 1491 aa15.74■□□□□ 0.11
TOP3A-216ENST00000583804 SLIT1O75093 1534 aa15.73■□□□□ 0.11
TOP3A-216ENST00000583804 ZFYVE9O95405 1425 aa15.73■□□□□ 0.11
TOP3A-216ENST00000583804 NEXMIFQ5QGS0 1516 aa15.73■□□□□ 0.11
TOP3A-216ENST00000583804 TIMELESSQ9UNS1 1208 aa15.71■□□□□ 0.11
TOP3A-216ENST00000583804 ADGRF5Q8IZF2 1346 aa15.71■□□□□ 0.11
TOP3A-216ENST00000583804 SCAF11Q99590 1463 aaKnown RBP15.71■□□□□ 0.1
TOP3A-216ENST00000583804 STAC3Q96MF2 364 aa15.7■□□□□ 0.1
TOP3A-216ENST00000583804 PPLO60437 1756 aa15.68■□□□□ 0.1
TOP3A-216ENST00000583804 SLC26A8Q96RN1 970 aa15.66■□□□□ 0.1
TOP3A-216ENST00000583804 PLEKHG1Q9ULL1 1385 aa15.66■□□□□ 0.1
TOP3A-216ENST00000583804 MYOM2P54296 1465 aa15.66■□□□□ 0.1
TOP3A-216ENST00000583804 IFT172Q9UG01 1749 aa15.66■□□□□ 0.1
TOP3A-216ENST00000583804 NPHP4O75161 1426 aaPredicted RBP15.65■□□□□ 0.1
TOP3A-216ENST00000583804 POLR1AO95602 1720 aaPredicted RBP15.64■□□□□ 0.09
TOP3A-216ENST00000583804 CFAP70Q5T0N1 1121 aa15.64■□□□□ 0.09
TOP3A-216ENST00000583804 DMRT2Q9Y5R5 561 aa15.64■□□□□ 0.09
TOP3A-216ENST00000583804 MED14O60244 1454 aa15.63■□□□□ 0.09
TOP3A-216ENST00000583804 NBPF8Q3BBV2 869 aa15.63■□□□□ 0.09
TOP3A-216ENST00000583804 STRCQ7RTU9 1775 aa15.63■□□□□ 0.09
TOP3A-216ENST00000583804 PRAG1Q86YV5 1406 aa15.62■□□□□ 0.09
TOP3A-216ENST00000583804 C14orf93Q9H972 538 aaKnown RBP15.62■□□□□ 0.09
TOP3A-216ENST00000583804 NRXN1Q9ULB1 1477 aa15.62■□□□□ 0.09
TOP3A-216ENST00000583804 PIK3C2GO75747 1445 aa15.62■□□□□ 0.09
TOP3A-216ENST00000583804 TBX22Q9Y458 520 aa15.61■□□□□ 0.09
TOP3A-216ENST00000583804 IQGAP1P46940 1657 aa15.6■□□□□ 0.09
TOP3A-216ENST00000583804 ADAMTS13Q76LX8 1427 aa15.6■□□□□ 0.09
TOP3A-216ENST00000583804 TMEM132EQ6IEE7 984 aa15.59■□□□□ 0.09
TOP3A-216ENST00000583804 SETBP1Q9Y6X0 1596 aa15.59■□□□□ 0.09
TOP3A-216ENST00000583804 ALKQ9UM73 1620 aa15.58■□□□□ 0.08
TOP3A-216ENST00000583804 NBPF1Q3BBV0 1214 aa15.58■□□□□ 0.08
TOP3A-216ENST00000583804 NRXN3Q9Y4C0 1643 aa15.57■□□□□ 0.08
TOP3A-216ENST00000583804 STK26Q9P289 416 aa15.56■□□□□ 0.08
TOP3A-216ENST00000583804 METP08581 1390 aa15.56■□□□□ 0.08
TOP3A-216ENST00000583804 ROCK2O75116 1388 aaKnown RBP15.55■□□□□ 0.08
TOP3A-216ENST00000583804 FBXO41Q8TF61 875 aa15.54■□□□□ 0.08
TOP3A-216ENST00000583804 DIP2AQ14689 1571 aa15.53■□□□□ 0.08
TOP3A-216ENST00000583804 AMOTL2Q9Y2J4 779 aa15.53■□□□□ 0.08
TOP3A-216ENST00000583804 CARD11Q9BXL7 1154 aa15.52■□□□□ 0.08
TOP3A-216ENST00000583804 LAMC1P11047 1609 aa15.52■□□□□ 0.08
TOP3A-216ENST00000583804 TRPM1Q7Z4N2 1603 aa15.52■□□□□ 0.07
TOP3A-216ENST00000583804 PIK3R4Q99570 1358 aa15.52■□□□□ 0.07
TOP3A-216ENST00000583804 KCNA6P17658 529 aa15.52■□□□□ 0.07
TOP3A-216ENST00000583804 TRAK1Q9UPV9 953 aa15.51■□□□□ 0.07
TOP3A-216ENST00000583804 KIAA1210Q9ULL0 1709 aa15.51■□□□□ 0.07
TOP3A-216ENST00000583804 ZNF335Q9H4Z2 1342 aaPredicted RBP15.5■□□□□ 0.07
TOP3A-216ENST00000583804 RALGAPBQ86X10 1494 aa15.5■□□□□ 0.07
TOP3A-216ENST00000583804 SETD1AO15047 1707 aaKnown RBP15.5■□□□□ 0.07
TOP3A-216ENST00000583804 PTPRUQ92729 1446 aa15.5■□□□□ 0.07
TOP3A-216ENST00000583804 YTHDC2Q9H6S0 1430 aaKnown RBP15.5■□□□□ 0.07
TOP3A-216ENST00000583804 ASXL1Q8IXJ9 1541 aa15.49■□□□□ 0.07
TOP3A-216ENST00000583804 LRPPRCP42704 1394 aaKnown RBP15.49■□□□□ 0.07
TOP3A-216ENST00000583804 ADGRB1O14514 1584 aa15.49■□□□□ 0.07
TOP3A-216ENST00000583804 HIRIP3Q9BW71 556 aaPredicted RBP15.47■□□□□ 0.07
TOP3A-216ENST00000583804 GPRASP1Q5JY77 1395 aa15.47■□□□□ 0.07
TOP3A-216ENST00000583804 ABCC11Q96J66 1382 aa15.47■□□□□ 0.07
TOP3A-216ENST00000583804 PROSER2Q86WR7 435 aaPredicted RBP15.46■□□□□ 0.07
TOP3A-216ENST00000583804 POGKQ9P215 609 aa15.46■□□□□ 0.07
TOP3A-216ENST00000583804 WAPLQ7Z5K2 1190 aa15.46■□□□□ 0.06
TOP3A-216ENST00000583804 CHD2O14647 1828 aaKnown RBP15.45■□□□□ 0.06
TOP3A-216ENST00000583804 RBM33Q96EV2 1170 aaKnown RBP15.45■□□□□ 0.06
TOP3A-216ENST00000583804 PRAM1Q96QH2 718 aa15.45■□□□□ 0.06
TOP3A-216ENST00000583804 SAFB2Q14151 953 aaKnown RBP eCLIP15.44■□□□□ 0.06
TOP3A-216ENST00000583804 ROBO2Q9HCK4 1378 aa15.44■□□□□ 0.06
TOP3A-216ENST00000583804 TECPR2O15040 1411 aa15.42■□□□□ 0.06
TOP3A-216ENST00000583804 C14orf37Q86TY3 774 aa15.42■□□□□ 0.06
TOP3A-216ENST00000583804 SIRT1Q96EB6 747 aa15.42■□□□□ 0.06
TOP3A-216ENST00000583804 NWD1Q149M9 1564 aa15.42■□□□□ 0.06
TOP3A-216ENST00000583804 EIF3AQ14152 1382 aaKnown RBP15.41■□□□□ 0.06
TOP3A-216ENST00000583804 USP47Q96K76 1375 aa15.41■□□□□ 0.06
TOP3A-216ENST00000583804 EIF4G2P78344 907 aaKnown RBP eCLIP15.41■□□□□ 0.06
TOP3A-216ENST00000583804 XRN1Q8IZH2 1706 aaKnown RBP15.41■□□□□ 0.06
TOP3A-216ENST00000583804 NKTRP30414 1462 aaKnown RBP15.41■□□□□ 0.06
TOP3A-216ENST00000583804 PLEKHH1Q9ULM0 1364 aa15.41■□□□□ 0.06
TOP3A-216ENST00000583804 STRCP1A6NGW2 1772 aa15.4■□□□□ 0.06
TOP3A-216ENST00000583804 CENPJQ9HC77 1338 aaPredicted RBP15.4■□□□□ 0.06
TOP3A-216ENST00000583804 PTCH1Q13635 1447 aa15.4■□□□□ 0.06
TOP3A-216ENST00000583804 FAM135BQ49AJ0 1406 aa15.4■□□□□ 0.06
TOP3A-216ENST00000583804 ST20-MTHFSA0A0A6YYL1 179 aa15.4■□□□□ 0.06
TOP3A-216ENST00000583804 DLC1Q96QB1 1528 aa15.39■□□□□ 0.05
TOP3A-216ENST00000583804 TMEM94Q12767 1356 aa15.39■□□□□ 0.05
TOP3A-216ENST00000583804 CPS1P31327 1500 aa15.39■□□□□ 0.05
TOP3A-216ENST00000583804 KNDC1Q76NI1 1749 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms