RNA–Protein interactions for RNA: ENST00000583708.5

UBBP4-201, Transcript of ubiquitin B pseudogene 4, humanhuman

BASIC

Gene UBBP4, Length 689 nt, Biotype transcribed unprocessed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-201ENST00000583708 CLTCL1P53675 1640 aa13.47□□□□□ -0.25
UBBP4-201ENST00000583708 UBR1Q8IWV7 1749 aa13.46□□□□□ -0.25
UBBP4-201ENST00000583708 RIMS2Q9UQ26 1411 aa13.46□□□□□ -0.26
UBBP4-201ENST00000583708 KIF1BO60333 1816 aa13.46□□□□□ -0.26
UBBP4-201ENST00000583708 MED14O60244 1454 aa13.45□□□□□ -0.26
UBBP4-201ENST00000583708 SCAF11Q99590 1463 aaKnown RBP13.44□□□□□ -0.26
UBBP4-201ENST00000583708 RGL3Q3MIN7 710 aa13.44□□□□□ -0.26
UBBP4-201ENST00000583708 PPP1R15AO75807 674 aaPredicted RBP13.43□□□□□ -0.26
UBBP4-201ENST00000583708 HSPA2P54652 639 aa13.43□□□□□ -0.26
UBBP4-201ENST00000583708 PLEKHG1Q9ULL1 1385 aa13.43□□□□□ -0.26
UBBP4-201ENST00000583708 LTKP29376 864 aa13.42□□□□□ -0.26
UBBP4-201ENST00000583708 SIN3AQ96ST3 1273 aa13.42□□□□□ -0.26
UBBP4-201ENST00000583708 TBX22Q9Y458 520 aa13.42□□□□□ -0.26
UBBP4-201ENST00000583708 NEUROD1Q13562 356 aa13.41□□□□□ -0.26
UBBP4-201ENST00000583708 DCAF11Q8TEB1 546 aa13.4□□□□□ -0.26
UBBP4-201ENST00000583708 TONSLQ96HA7 1378 aa13.4□□□□□ -0.26
UBBP4-201ENST00000583708 NPHP4O75161 1426 aaPredicted RBP13.39□□□□□ -0.27
UBBP4-201ENST00000583708 L3MBTL2Q969R5 705 aa13.39□□□□□ -0.27
UBBP4-201ENST00000583708 MYOM2P54296 1465 aa13.39□□□□□ -0.27
UBBP4-201ENST00000583708 NCKAP5LQ9HCH0 1330 aa13.39□□□□□ -0.27
UBBP4-201ENST00000583708 PIK3R4Q99570 1358 aa13.38□□□□□ -0.27
UBBP4-201ENST00000583708 NEXMIFQ5QGS0 1516 aa13.38□□□□□ -0.27
UBBP4-201ENST00000583708 BCANQ96GW7 911 aa13.36□□□□□ -0.27
UBBP4-201ENST00000583708 C14orf93Q9H972 538 aaKnown RBP13.36□□□□□ -0.27
UBBP4-201ENST00000583708 NRXN1Q9ULB1 1477 aa13.36□□□□□ -0.27
UBBP4-201ENST00000583708 DIP2AQ14689 1571 aa13.34□□□□□ -0.27
UBBP4-201ENST00000583708 SETBP1Q9Y6X0 1596 aa13.34□□□□□ -0.27
UBBP4-201ENST00000583708 ADGRF5Q8IZF2 1346 aa13.34□□□□□ -0.27
UBBP4-201ENST00000583708 PIK3C2GO75747 1445 aa13.33□□□□□ -0.28
UBBP4-201ENST00000583708 KDM2AQ9Y2K7 1162 aa13.33□□□□□ -0.28
UBBP4-201ENST00000583708 MYO5BQ9ULV0 1848 aa13.33□□□□□ -0.28
UBBP4-201ENST00000583708 POLR1AO95602 1720 aaPredicted RBP13.33□□□□□ -0.28
UBBP4-201ENST00000583708 PPLO60437 1756 aa13.32□□□□□ -0.28
UBBP4-201ENST00000583708 STRCQ7RTU9 1775 aa13.32□□□□□ -0.28
UBBP4-201ENST00000583708 KCNA6P17658 529 aa13.32□□□□□ -0.28
UBBP4-201ENST00000583708 SIRT1Q96EB6 747 aa13.32□□□□□ -0.28
UBBP4-201ENST00000583708 ADAMTS13Q76LX8 1427 aa13.31□□□□□ -0.28
UBBP4-201ENST00000583708 ZEB1P37275 1124 aaPredicted RBP13.31□□□□□ -0.28
UBBP4-201ENST00000583708 NUTM2DQ5VT03 806 aaPredicted RBP13.31□□□□□ -0.28
UBBP4-201ENST00000583708 SLC26A8Q96RN1 970 aa13.3□□□□□ -0.28
UBBP4-201ENST00000583708 IQGAP1P46940 1657 aa13.3□□□□□ -0.28
UBBP4-201ENST00000583708 IFT172Q9UG01 1749 aa13.3□□□□□ -0.28
UBBP4-201ENST00000583708 PRAG1Q86YV5 1406 aa13.3□□□□□ -0.28
UBBP4-201ENST00000583708 LAMC1P11047 1609 aa13.28□□□□□ -0.28
UBBP4-201ENST00000583708 SLC24A1O60721 1099 aa13.27□□□□□ -0.29
UBBP4-201ENST00000583708 CFAP70Q5T0N1 1121 aa13.27□□□□□ -0.29
UBBP4-201ENST00000583708 ABCC11Q96J66 1382 aa13.27□□□□□ -0.29
UBBP4-201ENST00000583708 ALKQ9UM73 1620 aa13.27□□□□□ -0.29
UBBP4-201ENST00000583708 LRPPRCP42704 1394 aaKnown RBP13.26□□□□□ -0.29
UBBP4-201ENST00000583708 NCOA3Q9Y6Q9 1424 aa13.26□□□□□ -0.29
UBBP4-201ENST00000583708 KIAA1210Q9ULL0 1709 aa13.25□□□□□ -0.29
UBBP4-201ENST00000583708 AMOTL2Q9Y2J4 779 aa13.25□□□□□ -0.29
UBBP4-201ENST00000583708 GPRASP1Q5JY77 1395 aa13.24□□□□□ -0.29
UBBP4-201ENST00000583708 CPS1P31327 1500 aa13.23□□□□□ -0.29
UBBP4-201ENST00000583708 METP08581 1390 aa13.23□□□□□ -0.29
UBBP4-201ENST00000583708 NBPF8Q3BBV2 869 aa13.23□□□□□ -0.29
UBBP4-201ENST00000583708 NRXN3Q9Y4C0 1643 aa13.23□□□□□ -0.29
UBBP4-201ENST00000583708 NKTRP30414 1462 aaKnown RBP13.23□□□□□ -0.29
UBBP4-201ENST00000583708 TECPR2O15040 1411 aa13.22□□□□□ -0.29
UBBP4-201ENST00000583708 FAM135BQ49AJ0 1406 aa13.22□□□□□ -0.29
UBBP4-201ENST00000583708 YTHDC2Q9H6S0 1430 aaKnown RBP13.22□□□□□ -0.29
UBBP4-201ENST00000583708 RALGAPBQ86X10 1494 aa13.21□□□□□ -0.3
UBBP4-201ENST00000583708 PTCH1Q13635 1447 aa13.21□□□□□ -0.3
UBBP4-201ENST00000583708 ROCK2O75116 1388 aaKnown RBP13.2□□□□□ -0.3
UBBP4-201ENST00000583708 TMEM132EQ6IEE7 984 aa13.2□□□□□ -0.3
UBBP4-201ENST00000583708 PROSER2Q86WR7 435 aaPredicted RBP13.2□□□□□ -0.3
UBBP4-201ENST00000583708 NWD1Q149M9 1564 aa13.2□□□□□ -0.3
UBBP4-201ENST00000583708 DLC1Q96QB1 1528 aa13.19□□□□□ -0.3
UBBP4-201ENST00000583708 ZNF335Q9H4Z2 1342 aaPredicted RBP13.19□□□□□ -0.3
UBBP4-201ENST00000583708 IQSEC2Q5JU85 1478 aa13.19□□□□□ -0.3
UBBP4-201ENST00000583708 CHD2O14647 1828 aaKnown RBP13.19□□□□□ -0.3
UBBP4-201ENST00000583708 NBPF1Q3BBV0 1214 aa13.19□□□□□ -0.3
UBBP4-201ENST00000583708 CARD11Q9BXL7 1154 aa13.19□□□□□ -0.3
UBBP4-201ENST00000583708 ADGRB1O14514 1584 aa13.19□□□□□ -0.3
UBBP4-201ENST00000583708 EIF3AQ14152 1382 aaKnown RBP13.19□□□□□ -0.3
UBBP4-201ENST00000583708 PTPRUQ92729 1446 aa13.18□□□□□ -0.3
UBBP4-201ENST00000583708 SETD1AO15047 1707 aaKnown RBP13.17□□□□□ -0.3
UBBP4-201ENST00000583708 C19orf44Q9H6X5 657 aa13.17□□□□□ -0.3
UBBP4-201ENST00000583708 POGKQ9P215 609 aa13.16□□□□□ -0.3
UBBP4-201ENST00000583708 STK26Q9P289 416 aa13.16□□□□□ -0.3
UBBP4-201ENST00000583708 TRPM1Q7Z4N2 1603 aa13.16□□□□□ -0.3
UBBP4-201ENST00000583708 LTBP4Q8N2S1 1624 aa13.16□□□□□ -0.3
UBBP4-201ENST00000583708 TRAK1Q9UPV9 953 aa13.15□□□□□ -0.3
UBBP4-201ENST00000583708 XRN1Q8IZH2 1706 aaKnown RBP13.15□□□□□ -0.3
UBBP4-201ENST00000583708 CERKQ8TCT0 537 aa13.14□□□□□ -0.31
UBBP4-201ENST00000583708 SENP3Q9H4L4 574 aaPredicted RBP13.14□□□□□ -0.31
UBBP4-201ENST00000583708 TMEM94Q12767 1356 aa13.14□□□□□ -0.31
UBBP4-201ENST00000583708 ROBO2Q9HCK4 1378 aa13.14□□□□□ -0.31
UBBP4-201ENST00000583708 ASXL1Q8IXJ9 1541 aa13.13□□□□□ -0.31
UBBP4-201ENST00000583708 LRRC7Q96NW7 1537 aa13.13□□□□□ -0.31
UBBP4-201ENST00000583708 SBNO2Q9Y2G9 1366 aa13.13□□□□□ -0.31
UBBP4-201ENST00000583708 CADPS2Q86UW7 1296 aa13.13□□□□□ -0.31
UBBP4-201ENST00000583708 PUS7Q96PZ0 661 aaKnown RBP13.13□□□□□ -0.31
UBBP4-201ENST00000583708 PRAM1Q96QH2 718 aa13.13□□□□□ -0.31
UBBP4-201ENST00000583708 KNDC1Q76NI1 1749 aa13.13□□□□□ -0.31
UBBP4-201ENST00000583708 DCCP43146 1447 aa13.13□□□□□ -0.31
UBBP4-201ENST00000583708 CENPJQ9HC77 1338 aaPredicted RBP13.13□□□□□ -0.31
UBBP4-201ENST00000583708 MSH6P52701 1360 aa13.12□□□□□ -0.31
UBBP4-201ENST00000583708 EIF4G2P78344 907 aaKnown RBP eCLIP13.12□□□□□ -0.31
UBBP4-201ENST00000583708 ATF3P18847 181 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 192.2 ms