RNA–Protein interactions for RNA: ENST00000583363.5

CDK5RAP3-228, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 558 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-228ENST00000583363 L3MBTL2Q969R5 705 aa23.6■■□□□ 1.37
CDK5RAP3-228ENST00000583363 TONSLQ96HA7 1378 aa23.6■■□□□ 1.37
CDK5RAP3-228ENST00000583363 SCAF1Q9H7N4 1312 aaKnown RBP23.59■■□□□ 1.37
CDK5RAP3-228ENST00000583363 SPATA31E1Q6ZUB1 1445 aa23.59■■□□□ 1.37
CDK5RAP3-228ENST00000583363 PIK3C2BO00750 1634 aa23.59■■□□□ 1.37
CDK5RAP3-228ENST00000583363 HSPA1LP34931 641 aa23.59■■□□□ 1.37
CDK5RAP3-228ENST00000583363 PIP4K2BP78356 416 aa23.59■■□□□ 1.37
CDK5RAP3-228ENST00000583363 RGL3Q3MIN7 710 aa23.59■■□□□ 1.37
CDK5RAP3-228ENST00000583363 MED14O60244 1454 aa23.59■■□□□ 1.37
CDK5RAP3-228ENST00000583363 NPHP4O75161 1426 aaPredicted RBP23.59■■□□□ 1.37
CDK5RAP3-228ENST00000583363 CHGAP10645 457 aaKnown RBP23.58■■□□□ 1.37
CDK5RAP3-228ENST00000583363 TOM1O60784 492 aa23.57■■□□□ 1.36
CDK5RAP3-228ENST00000583363 IQGAP1P46940 1657 aa23.55■■□□□ 1.36
CDK5RAP3-228ENST00000583363 PPP1R15AO75807 674 aaPredicted RBP23.54■■□□□ 1.36
CDK5RAP3-228ENST00000583363 ALKQ9UM73 1620 aa23.54■■□□□ 1.36
CDK5RAP3-228ENST00000583363 KIF1BO60333 1816 aa23.54■■□□□ 1.36
CDK5RAP3-228ENST00000583363 MED1Q15648 1581 aaPredicted RBP23.53■■□□□ 1.36
CDK5RAP3-228ENST00000583363 STAG3Q9UJ98 1225 aa23.53■■□□□ 1.36
CDK5RAP3-228ENST00000583363 STRCP1A6NGW2 1772 aa23.52■■□□□ 1.36
CDK5RAP3-228ENST00000583363 ZNF326Q5BKZ1 582 aaKnown RBP23.5■■□□□ 1.35
CDK5RAP3-228ENST00000583363 DCAF11Q8TEB1 546 aa23.5■■□□□ 1.35
CDK5RAP3-228ENST00000583363 RPGRIP1LQ68CZ1 1315 aa23.5■■□□□ 1.35
CDK5RAP3-228ENST00000583363 ADGRB3O60242 1522 aa23.49■■□□□ 1.35
CDK5RAP3-228ENST00000583363 TMEM131LA2VDJ0 1609 aa23.48■■□□□ 1.35
CDK5RAP3-228ENST00000583363 STAC3Q96MF2 364 aa23.48■■□□□ 1.35
CDK5RAP3-228ENST00000583363 KDM2AQ9Y2K7 1162 aa23.48■■□□□ 1.35
CDK5RAP3-228ENST00000583363 UBR1Q8IWV7 1749 aa23.47■■□□□ 1.35
CDK5RAP3-228ENST00000583363 LRRC7Q96NW7 1537 aa23.45■■□□□ 1.34
CDK5RAP3-228ENST00000583363 MYO5BQ9ULV0 1848 aa23.41■■□□□ 1.34
CDK5RAP3-228ENST00000583363 NBPF8Q3BBV2 869 aa23.41■■□□□ 1.34
CDK5RAP3-228ENST00000583363 KDM5AP29375 1690 aaKnown RBP23.41■■□□□ 1.34
CDK5RAP3-228ENST00000583363 SCAF11Q99590 1463 aaKnown RBP23.39■■□□□ 1.34
CDK5RAP3-228ENST00000583363 VGFO15240 615 aaPredicted RBP23.39■■□□□ 1.33
CDK5RAP3-228ENST00000583363 HDGFP51858 240 aaKnown RBP23.39■■□□□ 1.33
CDK5RAP3-228ENST00000583363 ARHGAP23Q9P227 1491 aa23.38■■□□□ 1.33
CDK5RAP3-228ENST00000583363 TMEM2Q9UHN6 1383 aa23.38■■□□□ 1.33
CDK5RAP3-228ENST00000583363 ADGRF5Q8IZF2 1346 aa23.37■■□□□ 1.33
CDK5RAP3-228ENST00000583363 RIMS2Q9UQ26 1411 aa23.37■■□□□ 1.33
CDK5RAP3-228ENST00000583363 LTKP29376 864 aa23.37■■□□□ 1.33
CDK5RAP3-228ENST00000583363 NUTM2DQ5VT03 806 aaPredicted RBP23.37■■□□□ 1.33
CDK5RAP3-228ENST00000583363 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.37■■□□□ 1.33
CDK5RAP3-228ENST00000583363 SLIT1O75093 1534 aa23.37■■□□□ 1.33
CDK5RAP3-228ENST00000583363 NEXMIFQ5QGS0 1516 aa23.36■■□□□ 1.33
CDK5RAP3-228ENST00000583363 ZFYVE9O95405 1425 aa23.35■■□□□ 1.33
CDK5RAP3-228ENST00000583363 SENP3Q9H4L4 574 aaPredicted RBP23.35■■□□□ 1.33
CDK5RAP3-228ENST00000583363 TXNDC2Q86VQ3 553 aa23.34■■□□□ 1.33
CDK5RAP3-228ENST00000583363 MYOM2P54296 1465 aa23.34■■□□□ 1.33
CDK5RAP3-228ENST00000583363 PPLO60437 1756 aa23.34■■□□□ 1.33
CDK5RAP3-228ENST00000583363 PRAG1Q86YV5 1406 aa23.33■■□□□ 1.33
CDK5RAP3-228ENST00000583363 IFT172Q9UG01 1749 aa23.33■■□□□ 1.33
CDK5RAP3-228ENST00000583363 XIRP1Q702N8 1843 aaKnown RBP23.33■■□□□ 1.33
CDK5RAP3-228ENST00000583363 NRXN1Q9ULB1 1477 aa23.31■■□□□ 1.32
CDK5RAP3-228ENST00000583363 PHF23Q9BUL5 403 aaPredicted RBP23.31■■□□□ 1.32
CDK5RAP3-228ENST00000583363 EID1Q9Y6B2 187 aa23.31■■□□□ 1.32
CDK5RAP3-228ENST00000583363 C14orf93Q9H972 538 aaKnown RBP23.27■■□□□ 1.32
CDK5RAP3-228ENST00000583363 CFAP70Q5T0N1 1121 aa23.26■■□□□ 1.31
CDK5RAP3-228ENST00000583363 PIK3C2GO75747 1445 aa23.25■■□□□ 1.31
CDK5RAP3-228ENST00000583363 NBPF1Q3BBV0 1214 aa23.24■■□□□ 1.31
CDK5RAP3-228ENST00000583363 PLEKHG1Q9ULL1 1385 aa23.21■■□□□ 1.31
CDK5RAP3-228ENST00000583363 RALGAPBQ86X10 1494 aa23.21■■□□□ 1.31
CDK5RAP3-228ENST00000583363 ROCK2O75116 1388 aaKnown RBP23.18■■□□□ 1.3
CDK5RAP3-228ENST00000583363 BCANQ96GW7 911 aa23.18■■□□□ 1.3
CDK5RAP3-228ENST00000583363 TRPM1Q7Z4N2 1603 aa23.18■■□□□ 1.3
CDK5RAP3-228ENST00000583363 TMEM94Q12767 1356 aa23.17■■□□□ 1.3
CDK5RAP3-228ENST00000583363 GPRASP1Q5JY77 1395 aa23.17■■□□□ 1.3
CDK5RAP3-228ENST00000583363 CARD11Q9BXL7 1154 aa23.17■■□□□ 1.3
CDK5RAP3-228ENST00000583363 RGS17Q9UGC6 210 aaPredicted RBP23.17■■□□□ 1.3
CDK5RAP3-228ENST00000583363 KIAA1210Q9ULL0 1709 aa23.16■■□□□ 1.3
CDK5RAP3-228ENST00000583363 FAM135BQ49AJ0 1406 aa23.16■■□□□ 1.3
CDK5RAP3-228ENST00000583363 SLC26A8Q96RN1 970 aa23.15■■□□□ 1.3
CDK5RAP3-228ENST00000583363 SETBP1Q9Y6X0 1596 aa23.14■■□□□ 1.3
CDK5RAP3-228ENST00000583363 KCNA6P17658 529 aa23.14■■□□□ 1.29
CDK5RAP3-228ENST00000583363 TMEM132EQ6IEE7 984 aa23.14■■□□□ 1.29
CDK5RAP3-228ENST00000583363 TBX22Q9Y458 520 aa23.14■■□□□ 1.29
CDK5RAP3-228ENST00000583363 ADAMTS13Q76LX8 1427 aa23.13■■□□□ 1.29
CDK5RAP3-228ENST00000583363 RBM33Q96EV2 1170 aaKnown RBP23.12■■□□□ 1.29
CDK5RAP3-228ENST00000583363 NRXN3Q9Y4C0 1643 aa23.11■■□□□ 1.29
CDK5RAP3-228ENST00000583363 ROBO1Q9Y6N7 1651 aa23.11■■□□□ 1.29
CDK5RAP3-228ENST00000583363 PROSER2Q86WR7 435 aaPredicted RBP23.1■■□□□ 1.29
CDK5RAP3-228ENST00000583363 NWD1Q149M9 1564 aa23.1■■□□□ 1.29
CDK5RAP3-228ENST00000583363 EIF4G2P78344 907 aaKnown RBP eCLIP23.09■■□□□ 1.29
CDK5RAP3-228ENST00000583363 ADGRB1O14514 1584 aa23.09■■□□□ 1.29
CDK5RAP3-228ENST00000583363 LAMC1P11047 1609 aa23.08■■□□□ 1.29
CDK5RAP3-228ENST00000583363 METP08581 1390 aa23.08■■□□□ 1.29
CDK5RAP3-228ENST00000583363 NKTRP30414 1462 aaKnown RBP23.07■■□□□ 1.28
CDK5RAP3-228ENST00000583363 HSPA5P11021 654 aaKnown RBP23.06■■□□□ 1.28
CDK5RAP3-228ENST00000583363 SETD1AO15047 1707 aaKnown RBP23.05■■□□□ 1.28
CDK5RAP3-228ENST00000583363 USP47Q96K76 1375 aa23.04■■□□□ 1.28
CDK5RAP3-228ENST00000583363 ASXL1Q8IXJ9 1541 aa23.04■■□□□ 1.28
CDK5RAP3-228ENST00000583363 TRAK1Q9UPV9 953 aa23.04■■□□□ 1.28
CDK5RAP3-228ENST00000583363 YTHDC2Q9H6S0 1430 aaKnown RBP23.03■■□□□ 1.28
CDK5RAP3-228ENST00000583363 STK26Q9P289 416 aa23.03■■□□□ 1.28
CDK5RAP3-228ENST00000583363 LRPPRCP42704 1394 aaKnown RBP23.02■■□□□ 1.28
CDK5RAP3-228ENST00000583363 CHD2O14647 1828 aaKnown RBP23.02■■□□□ 1.28
CDK5RAP3-228ENST00000583363 DIP2AQ14689 1571 aa23.01■■□□□ 1.27
CDK5RAP3-228ENST00000583363 ST20-MTHFSA0A0A6YYL1 179 aa23.01■■□□□ 1.27
CDK5RAP3-228ENST00000583363 HIRIP3Q9BW71 556 aaPredicted RBP23.01■■□□□ 1.27
CDK5RAP3-228ENST00000583363 ABCC11Q96J66 1382 aa23.01■■□□□ 1.27
CDK5RAP3-228ENST00000583363 PIK3R4Q99570 1358 aa23.01■■□□□ 1.27
CDK5RAP3-228ENST00000583363 POTEAQ6S8J7 498 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms