RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 PTPN23Q9H3S7 1636 aa19.21■□□□□ 0.67
TOP3A-215ENST00000583328 C14orf37Q86TY3 774 aa19.2■□□□□ 0.66
TOP3A-215ENST00000583328 KDM5AP29375 1690 aaKnown RBP19.2■□□□□ 0.66
TOP3A-215ENST00000583328 MEX3CQ5U5Q3 659 aaKnown RBP19.19■□□□□ 0.66
TOP3A-215ENST00000583328 FGD6Q6ZV73 1430 aa19.18■□□□□ 0.66
TOP3A-215ENST00000583328 ADGRB3O60242 1522 aa19.18■□□□□ 0.66
TOP3A-215ENST00000583328 PLEKHG1Q9ULL1 1385 aa19.18■□□□□ 0.66
TOP3A-215ENST00000583328 TBX22Q9Y458 520 aa19.17■□□□□ 0.66
TOP3A-215ENST00000583328 CROCC2H7BZ55 1655 aa19.17■□□□□ 0.66
TOP3A-215ENST00000583328 NWD1Q149M9 1564 aa19.16■□□□□ 0.66
TOP3A-215ENST00000583328 CHGAP10645 457 aaKnown RBP19.16■□□□□ 0.66
TOP3A-215ENST00000583328 ZNF772Q68DY9 489 aaPredicted RBP19.16■□□□□ 0.66
TOP3A-215ENST00000583328 RIMS2Q9UQ26 1411 aa19.16■□□□□ 0.66
TOP3A-215ENST00000583328 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.15■□□□□ 0.66
TOP3A-215ENST00000583328 SPATA31A6Q5VVP1 1343 aa19.15■□□□□ 0.66
TOP3A-215ENST00000583328 CADPS2Q86UW7 1296 aa19.14■□□□□ 0.65
TOP3A-215ENST00000583328 PHLPP1O60346 1717 aa19.14■□□□□ 0.65
TOP3A-215ENST00000583328 ATF3P18847 181 aa19.13■□□□□ 0.65
TOP3A-215ENST00000583328 TRIM52Q96A61 297 aa19.13■□□□□ 0.65
TOP3A-215ENST00000583328 ZFYVE9O95405 1425 aa19.13■□□□□ 0.65
TOP3A-215ENST00000583328 NCOA3Q9Y6Q9 1424 aa19.13■□□□□ 0.65
TOP3A-215ENST00000583328 FAM50AQ14320 339 aaKnown RBP19.12■□□□□ 0.65
TOP3A-215ENST00000583328 NUTM2DQ5VT03 806 aaPredicted RBP19.12■□□□□ 0.65
TOP3A-215ENST00000583328 UPF1Q92900 1129 aaKnown RBP eCLIP19.12■□□□□ 0.65
TOP3A-215ENST00000583328 C19orf44Q9H6X5 657 aa19.12■□□□□ 0.65
TOP3A-215ENST00000583328 RPRD2Q5VT52 1461 aaKnown RBP19.1■□□□□ 0.65
TOP3A-215ENST00000583328 ANKRD50Q9ULJ7 1429 aa19.09■□□□□ 0.65
TOP3A-215ENST00000583328 RXRBP28702 533 aa19.08■□□□□ 0.64
TOP3A-215ENST00000583328 SETD1AO15047 1707 aaKnown RBP19.08■□□□□ 0.64
TOP3A-215ENST00000583328 LRP6O75581 1613 aa19.07■□□□□ 0.64
TOP3A-215ENST00000583328 NUTM2BA6NNL0 878 aaPredicted RBP19.07■□□□□ 0.64
TOP3A-215ENST00000583328 NUTM2EB1AL46 878 aaPredicted RBP19.07■□□□□ 0.64
TOP3A-215ENST00000583328 NUTM2AQ8IVF1 878 aaPredicted RBP19.07■□□□□ 0.64
TOP3A-215ENST00000583328 ADGRL2O95490 1459 aa19.07■□□□□ 0.64
TOP3A-215ENST00000583328 COL16A1Q07092 1604 aaPredicted RBP19.06■□□□□ 0.64
TOP3A-215ENST00000583328 CHD2O14647 1828 aaKnown RBP19.05■□□□□ 0.64
TOP3A-215ENST00000583328 AMOTL2Q9Y2J4 779 aa19.05■□□□□ 0.64
TOP3A-215ENST00000583328 PIK3R4Q99570 1358 aa19.05■□□□□ 0.64
TOP3A-215ENST00000583328 BRINP3Q76B58 766 aa19.04■□□□□ 0.64
TOP3A-215ENST00000583328 ADAMTS13Q76LX8 1427 aa19.04■□□□□ 0.64
TOP3A-215ENST00000583328 TMEM131LA2VDJ0 1609 aa19.01■□□□□ 0.63
TOP3A-215ENST00000583328 AHDC1Q5TGY3 1603 aaPredicted RBP19■□□□□ 0.63
TOP3A-215ENST00000583328 AFF2P51816 1311 aa18.99■□□□□ 0.63
TOP3A-215ENST00000583328 GCC2Q8IWJ2 1684 aa18.98■□□□□ 0.63
TOP3A-215ENST00000583328 MYO5BQ9ULV0 1848 aa18.97■□□□□ 0.63
TOP3A-215ENST00000583328 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.97■□□□□ 0.63
TOP3A-215ENST00000583328 PTPRUQ92729 1446 aa18.97■□□□□ 0.63
TOP3A-215ENST00000583328 LRRC59Q96AG4 307 aaKnown RBP18.96■□□□□ 0.63
TOP3A-215ENST00000583328 DIP2AQ14689 1571 aa18.96■□□□□ 0.63
TOP3A-215ENST00000583328 C8orf37Q96NL8 207 aa18.94■□□□□ 0.62
TOP3A-215ENST00000583328 QTRT2Q9H974 415 aaKnown RBP18.94■□□□□ 0.62
TOP3A-215ENST00000583328 SHPRHQ149N8 1683 aa18.94■□□□□ 0.62
TOP3A-215ENST00000583328 TRPM2O94759 1503 aa18.94■□□□□ 0.62
TOP3A-215ENST00000583328 CDK12Q9NYV4 1490 aaPredicted RBP18.93■□□□□ 0.62
TOP3A-215ENST00000583328 NUP155O75694 1391 aa18.93■□□□□ 0.62
TOP3A-215ENST00000583328 DCCP43146 1447 aa18.92■□□□□ 0.62
TOP3A-215ENST00000583328 SETD5Q9C0A6 1442 aa18.92■□□□□ 0.62
TOP3A-215ENST00000583328 ZNF326Q5BKZ1 582 aaKnown RBP18.92■□□□□ 0.62
TOP3A-215ENST00000583328 RBM6P78332 1123 aaKnown RBP18.91■□□□□ 0.62
TOP3A-215ENST00000583328 DDX17Q92841 729 aaKnown RBP18.91■□□□□ 0.62
TOP3A-215ENST00000583328 ASXL1Q8IXJ9 1541 aa18.9■□□□□ 0.62
TOP3A-215ENST00000583328 MST1RQ04912 1400 aa18.89■□□□□ 0.61
TOP3A-215ENST00000583328 UNC13BO14795 1591 aa18.89■□□□□ 0.61
TOP3A-215ENST00000583328 E9PCH4 1651 aa18.88■□□□□ 0.61
TOP3A-215ENST00000583328 ROCK1Q13464 1354 aa18.87■□□□□ 0.61
TOP3A-215ENST00000583328 NGLY1Q96IV0 654 aa18.87■□□□□ 0.61
TOP3A-215ENST00000583328 METP08581 1390 aa18.86■□□□□ 0.61
TOP3A-215ENST00000583328 PNPLA6Q8IY17 1366 aa18.86■□□□□ 0.61
TOP3A-215ENST00000583328 ADAMTS2O95450 1211 aa18.86■□□□□ 0.61
TOP3A-215ENST00000583328 ITGAEP38570 1179 aa18.86■□□□□ 0.61
TOP3A-215ENST00000583328 RGS12O14924 1447 aa18.84■□□□□ 0.61
TOP3A-215ENST00000583328 IQGAP3Q86VI3 1631 aa18.82■□□□□ 0.6
TOP3A-215ENST00000583328 ADGRL3Q9HAR2 1447 aa18.82■□□□□ 0.6
TOP3A-215ENST00000583328 SETBP1Q9Y6X0 1596 aa18.81■□□□□ 0.6
TOP3A-215ENST00000583328 USP21Q9UK80 565 aa18.79■□□□□ 0.6
TOP3A-215ENST00000583328 XRN1Q8IZH2 1706 aaKnown RBP18.79■□□□□ 0.6
TOP3A-215ENST00000583328 ORAI2Q96SN7 254 aa18.78■□□□□ 0.6
TOP3A-215ENST00000583328 TRPC5Q9UL62 973 aaPredicted RBP18.78■□□□□ 0.6
TOP3A-215ENST00000583328 NHSL1Q5SYE7 1610 aa18.78■□□□□ 0.6
TOP3A-215ENST00000583328 NRXN3Q9Y4C0 1643 aa18.78■□□□□ 0.6
TOP3A-215ENST00000583328 C1orf167Q5SNV9 1468 aa18.77■□□□□ 0.6
TOP3A-215ENST00000583328 FOXD1Q16676 465 aa18.77■□□□□ 0.6
TOP3A-215ENST00000583328 ATAD2Q6PL18 1390 aa18.77■□□□□ 0.6
TOP3A-215ENST00000583328 SOS2Q07890 1332 aaPredicted RBP18.75■□□□□ 0.59
TOP3A-215ENST00000583328 FNBP4Q8N3X1 1017 aaPredicted RBP18.74■□□□□ 0.59
TOP3A-215ENST00000583328 ZRANB1Q9UGI0 708 aa18.73■□□□□ 0.59
TOP3A-215ENST00000583328 VGFO15240 615 aaPredicted RBP18.72■□□□□ 0.59
TOP3A-215ENST00000583328 PTCH1Q13635 1447 aa18.7■□□□□ 0.58
TOP3A-215ENST00000583328 ROBO2Q9HCK4 1378 aa18.69■□□□□ 0.58
TOP3A-215ENST00000583328 NEXMIFQ5QGS0 1516 aa18.69■□□□□ 0.58
TOP3A-215ENST00000583328 SPHKAPQ2M3C7 1700 aa18.67■□□□□ 0.58
TOP3A-215ENST00000583328 NALCNQ8IZF0 1738 aa18.67■□□□□ 0.58
TOP3A-215ENST00000583328 ESCO1Q5FWF5 840 aa18.67■□□□□ 0.58
TOP3A-215ENST00000583328 PPARGC1BQ86YN6 1023 aaKnown RBP18.67■□□□□ 0.58
TOP3A-215ENST00000583328 CCDC125Q86Z20 511 aa18.67■□□□□ 0.58
TOP3A-215ENST00000583328 ATRNO75882 1429 aa18.66■□□□□ 0.58
TOP3A-215ENST00000583328 NPHP3Q7Z494 1330 aa18.66■□□□□ 0.58
TOP3A-215ENST00000583328 RPGRIP1LQ68CZ1 1315 aa18.64■□□□□ 0.57
TOP3A-215ENST00000583328 CLTCL1P53675 1640 aa18.63■□□□□ 0.57
TOP3A-215ENST00000583328 FOXO3O43524 673 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms