RNA–Protein interactions for RNA: ENST00000580784.5

CSNK1D-215, Transcript of casein kinase 1 delta, human

TSL 1 (best)

Gene CSNK1D, Length 1,081 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSNK1D-215	ENST00000580784	SENP3	Q9H4L4	574 aa	Predicted RBP	32.31	■■■□□ 2.76
CSNK1D-215	ENST00000580784	ZFYVE9	O95405	1425 aa		32.3	■■■□□ 2.76
CSNK1D-215	ENST00000580784	XIRP1	Q702N8	1843 aa	Known RBP	32.3	■■■□□ 2.76
CSNK1D-215	ENST00000580784	HSPA1L	P34931	641 aa		32.29	■■■□□ 2.76
CSNK1D-215	ENST00000580784	RIMS2	Q9UQ26	1411 aa		32.28	■■■□□ 2.76
CSNK1D-215	ENST00000580784	NAIP	Q13075	1403 aa		32.26	■■■□□ 2.76
CSNK1D-215	ENST00000580784	KCNA6	P17658	529 aa		32.26	■■■□□ 2.75
CSNK1D-215	ENST00000580784	HDGF	P51858	240 aa	Known RBP	32.26	■■■□□ 2.75
CSNK1D-215	ENST00000580784	PPP1R15A	O75807	674 aa	Predicted RBP	32.25	■■■□□ 2.75
CSNK1D-215	ENST00000580784	PLEKHG1	Q9ULL1	1385 aa		32.22	■■■□□ 2.75
CSNK1D-215	ENST00000580784	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.21	■■■□□ 2.75
CSNK1D-215	ENST00000580784	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.2	■■■□□ 2.75
CSNK1D-215	ENST00000580784	SPHKAP	Q2M3C7	1700 aa		32.19	■■■□□ 2.74
CSNK1D-215	ENST00000580784	TMEM94	Q12767	1356 aa		32.18	■■■□□ 2.74
CSNK1D-215	ENST00000580784	PROSER2	Q86WR7	435 aa	Predicted RBP	32.17	■■■□□ 2.74
CSNK1D-215	ENST00000580784	RBM33	Q96EV2	1170 aa	Known RBP	32.17	■■■□□ 2.74
CSNK1D-215	ENST00000580784	HFM1	A2PYH4	1435 aa		32.14	■■■□□ 2.74
CSNK1D-215	ENST00000580784	NWD1	Q149M9	1564 aa		32.14	■■■□□ 2.74
CSNK1D-215	ENST00000580784	CHD2	O14647	1828 aa	Known RBP	32.14	■■■□□ 2.74
CSNK1D-215	ENST00000580784	ILDR2	Q71H61	639 aa		32.13	■■■□□ 2.73
CSNK1D-215	ENST00000580784	TBX22	Q9Y458	520 aa		32.12	■■■□□ 2.73
CSNK1D-215	ENST00000580784	TRIM52	Q96A61	297 aa		32.11	■■■□□ 2.73
CSNK1D-215	ENST00000580784	NKTR	P30414	1462 aa	Known RBP	32.1	■■■□□ 2.73
CSNK1D-215	ENST00000580784	ADAMTS13	Q76LX8	1427 aa		32.08	■■■□□ 2.73
CSNK1D-215	ENST00000580784	CLTCL1	P53675	1640 aa		32.04	■■■□□ 2.72
CSNK1D-215	ENST00000580784	ZNF326	Q5BKZ1	582 aa	Known RBP	32.04	■■■□□ 2.72
CSNK1D-215	ENST00000580784	TRPM2	O94759	1503 aa		32.02	■■■□□ 2.72
CSNK1D-215	ENST00000580784	DIP2A	Q14689	1571 aa		32.01	■■■□□ 2.71
CSNK1D-215	ENST00000580784	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32	■■■□□ 2.71
CSNK1D-215	ENST00000580784	FAM135B	Q49AJ0	1406 aa		31.98	■■■□□ 2.71
CSNK1D-215	ENST00000580784	KIF1B	O60333	1816 aa		31.98	■■■□□ 2.71
CSNK1D-215	ENST00000580784	MSH6	P52701	1360 aa		31.97	■■■□□ 2.71
CSNK1D-215	ENST00000580784	MED1	Q15648	1581 aa	Predicted RBP	31.97	■■■□□ 2.71
CSNK1D-215	ENST00000580784	PIK3R4	Q99570	1358 aa		31.96	■■■□□ 2.71
CSNK1D-215	ENST00000580784	NRXN3	Q9Y4C0	1643 aa		31.94	■■■□□ 2.7
CSNK1D-215	ENST00000580784	AMOTL2	Q9Y2J4	779 aa		31.92	■■■□□ 2.7
CSNK1D-215	ENST00000580784	ROBO1	Q9Y6N7	1651 aa		31.92	■■■□□ 2.7
CSNK1D-215	ENST00000580784	PTPRU	Q92729	1446 aa		31.92	■■■□□ 2.7
CSNK1D-215	ENST00000580784	NEXMIF	Q5QGS0	1516 aa		31.91	■■■□□ 2.7
CSNK1D-215	ENST00000580784	SETBP1	Q9Y6X0	1596 aa		31.9	■■■□□ 2.7
CSNK1D-215	ENST00000580784	SLAIN2	Q9P270	581 aa		31.9	■■■□□ 2.7
CSNK1D-215	ENST00000580784	FOXD1	Q16676	465 aa		31.88	■■■□□ 2.69
CSNK1D-215	ENST00000580784	C14orf37	Q86TY3	774 aa		31.88	■■■□□ 2.69
CSNK1D-215	ENST00000580784	NCOA3	Q9Y6Q9	1424 aa		31.88	■■■□□ 2.69
CSNK1D-215	ENST00000580784	MET	P08581	1390 aa		31.83	■■■□□ 2.69
CSNK1D-215	ENST00000580784	SOCS7	O14512	581 aa		31.83	■■■□□ 2.69
CSNK1D-215	ENST00000580784	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	31.83	■■■□□ 2.69
CSNK1D-215	ENST00000580784	C19orf44	Q9H6X5	657 aa		31.82	■■■□□ 2.68
CSNK1D-215	ENST00000580784	XRN1	Q8IZH2	1706 aa	Known RBP	31.8	■■■□□ 2.68
CSNK1D-215	ENST00000580784	MPHOSPH9	Q99550	1183 aa		31.8	■■■□□ 2.68
CSNK1D-215	ENST00000580784	VGF	O15240	615 aa	Predicted RBP	31.78	■■■□□ 2.68
CSNK1D-215	ENST00000580784	PHF23	Q9BUL5	403 aa	Predicted RBP	31.77	■■■□□ 2.68
CSNK1D-215	ENST00000580784	ATF3	P18847	181 aa		31.76	■■■□□ 2.67
CSNK1D-215	ENST00000580784	CADPS2	Q86UW7	1296 aa		31.76	■■■□□ 2.67
CSNK1D-215	ENST00000580784	RPGRIP1L	Q68CZ1	1315 aa		31.75	■■■□□ 2.67
CSNK1D-215	ENST00000580784	PHLPP1	O60346	1717 aa		31.73	■■■□□ 2.67
CSNK1D-215	ENST00000580784	PPL	O60437	1756 aa		31.73	■■■□□ 2.67
CSNK1D-215	ENST00000580784	SETD5	Q9C0A6	1442 aa		31.72	■■■□□ 2.67
CSNK1D-215	ENST00000580784	CCDC144A	A2RUR9	1427 aa		31.7	■■■□□ 2.67
CSNK1D-215	ENST00000580784	SETD1A	O15047	1707 aa	Known RBP	31.68	■■■□□ 2.66
CSNK1D-215	ENST00000580784	RGL3	Q3MIN7	710 aa		31.66	■■■□□ 2.66
CSNK1D-215	ENST00000580784	ACIN1	Q9UKV3	1341 aa	Known RBP	31.64	■■■□□ 2.66
CSNK1D-215	ENST00000580784	DCC	P43146	1447 aa		31.64	■■■□□ 2.66
CSNK1D-215	ENST00000580784	SPATA31E1	Q6ZUB1	1445 aa		31.62	■■■□□ 2.65
CSNK1D-215	ENST00000580784	COL16A1	Q07092	1604 aa	Predicted RBP	31.61	■■■□□ 2.65
CSNK1D-215	ENST00000580784	RGS17	Q9UGC6	210 aa	Predicted RBP	31.61	■■■□□ 2.65
CSNK1D-215	ENST00000580784	RAB3GAP2	Q9H2M9	1393 aa		31.6	■■■□□ 2.65
CSNK1D-215	ENST00000580784	BRINP3	Q76B58	766 aa		31.6	■■■□□ 2.65
CSNK1D-215	ENST00000580784	ADGRF5	Q8IZF2	1346 aa		31.59	■■■□□ 2.65
CSNK1D-215	ENST00000580784	NALCN	Q8IZF0	1738 aa		31.59	■■■□□ 2.65
CSNK1D-215	ENST00000580784	ADGRL3	Q9HAR2	1447 aa		31.58	■■■□□ 2.65
CSNK1D-215	ENST00000580784	JCAD	Q9P266	1359 aa		31.58	■■■□□ 2.65
CSNK1D-215	ENST00000580784	MST1R	Q04912	1400 aa		31.58	■■■□□ 2.65
CSNK1D-215	ENST00000580784	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.57	■■■□□ 2.64
CSNK1D-215	ENST00000580784	ROBO2	Q9HCK4	1378 aa		31.56	■■■□□ 2.64
CSNK1D-215	ENST00000580784	IFT172	Q9UG01	1749 aa		31.56	■■■□□ 2.64
CSNK1D-215	ENST00000580784	PTCH1	Q13635	1447 aa		31.54	■■■□□ 2.64
CSNK1D-215	ENST00000580784	ANKRD30B	Q9BXX2	1392 aa		31.53	■■■□□ 2.64
CSNK1D-215	ENST00000580784	ASXL1	Q8IXJ9	1541 aa		31.51	■■■□□ 2.63
CSNK1D-215	ENST00000580784	PRAG1	Q86YV5	1406 aa		31.49	■■■□□ 2.63
CSNK1D-215	ENST00000580784	STK26	Q9P289	416 aa		31.44	■■■□□ 2.62
CSNK1D-215	ENST00000580784	NHSL1	Q5SYE7	1610 aa		31.44	■■■□□ 2.62
CSNK1D-215	ENST00000580784	SHPRH	Q149N8	1683 aa		31.44	■■■□□ 2.62
CSNK1D-215	ENST00000580784	SPATA31A6	Q5VVP1	1343 aa		31.44	■■■□□ 2.62
CSNK1D-215	ENST00000580784	TMEM132E	Q6IEE7	984 aa		31.43	■■■□□ 2.62
CSNK1D-215	ENST00000580784	POTEA	Q6S8J7	498 aa		31.43	■■■□□ 2.62
CSNK1D-215	ENST00000580784	DDX17	Q92841	729 aa	Known RBP	31.43	■■■□□ 2.62
CSNK1D-215	ENST00000580784	PIK3C2G	O75747	1445 aa		31.42	■■■□□ 2.62
CSNK1D-215	ENST00000580784	C1orf167	Q5SNV9	1468 aa		31.42	■■■□□ 2.62
CSNK1D-215	ENST00000580784	LRP6	O75581	1613 aa		31.4	■■■□□ 2.62
CSNK1D-215	ENST00000580784	WAPL	Q7Z5K2	1190 aa		31.38	■■■□□ 2.61
CSNK1D-215	ENST00000580784	ORAI2	Q96SN7	254 aa		31.38	■■■□□ 2.61
CSNK1D-215	ENST00000580784	LRPPRC	P42704	1394 aa	Known RBP	31.38	■■■□□ 2.61
CSNK1D-215	ENST00000580784	HRC	P23327	699 aa		31.37	■■■□□ 2.61
CSNK1D-215	ENST00000580784	LRRC59	Q96AG4	307 aa	Known RBP	31.36	■■■□□ 2.61
CSNK1D-215	ENST00000580784	TECPR2	O15040	1411 aa		31.35	■■■□□ 2.61
CSNK1D-215	ENST00000580784	ABCC11	Q96J66	1382 aa		31.35	■■■□□ 2.61
CSNK1D-215	ENST00000580784	MEX3C	Q5U5Q3	659 aa	Known RBP	31.34	■■■□□ 2.61
CSNK1D-215	ENST00000580784	C14orf93	Q9H972	538 aa	Known RBP	31.34	■■■□□ 2.61
CSNK1D-215	ENST00000580784	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.33	■■■□□ 2.61

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