RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 REREQ9P2R6 1566 aa15.24■□□□□ 0.03
SKA2-204ENST00000578519 PPRC1Q5VV67 1664 aaKnown RBP15.23■□□□□ 0.03
SKA2-204ENST00000578519 KIF1BO60333 1816 aa15.23■□□□□ 0.03
SKA2-204ENST00000578519 AGLP35573 1532 aa15.22■□□□□ 0.03
SKA2-204ENST00000578519 VGFO15240 615 aaPredicted RBP15.22■□□□□ 0.03
SKA2-204ENST00000578519 YEATS2Q9ULM3 1422 aa15.22■□□□□ 0.03
SKA2-204ENST00000578519 SCAF11Q99590 1463 aaKnown RBP15.21■□□□□ 0.03
SKA2-204ENST00000578519 NOS1P29475 1434 aa15.21■□□□□ 0.03
SKA2-204ENST00000578519 ESF1Q9H501 851 aaKnown RBP15.21■□□□□ 0.03
SKA2-204ENST00000578519 KIAA1210Q9ULL0 1709 aa15.2■□□□□ 0.02
SKA2-204ENST00000578519 CAMSAP1Q5T5Y3 1602 aa15.19■□□□□ 0.02
SKA2-204ENST00000578519 MADDQ8WXG6 1647 aa15.19■□□□□ 0.02
SKA2-204ENST00000578519 RALBP1Q15311 655 aa15.19■□□□□ 0.02
SKA2-204ENST00000578519 PPP4R3CPQ6ZMV5 832 aa15.18■□□□□ 0.02
SKA2-204ENST00000578519 GTF3C3Q9Y5Q9 886 aa15.18■□□□□ 0.02
SKA2-204ENST00000578519 ADGRB3O60242 1522 aa15.17■□□□□ 0.02
SKA2-204ENST00000578519 TESK2Q96S53 571 aa15.16■□□□□ 0.02
SKA2-204ENST00000578519 MRS2Q9HD23 443 aa15.16■□□□□ 0.02
SKA2-204ENST00000578519 TSPOAP1O95153 1857 aa15.16■□□□□ 0.02
SKA2-204ENST00000578519 COL17A1Q9UMD9 1497 aaPredicted RBP15.14■□□□□ 0.01
SKA2-204ENST00000578519 NRXN1Q9ULB1 1477 aa15.14■□□□□ 0.01
SKA2-204ENST00000578519 CFAP70Q5T0N1 1121 aa15.13■□□□□ 0.01
SKA2-204ENST00000578519 C14orf93Q9H972 538 aaKnown RBP15.13■□□□□ 0.01
SKA2-204ENST00000578519 STAG3Q9UJ98 1225 aa15.13■□□□□ 0.01
SKA2-204ENST00000578519 ADGRF5Q8IZF2 1346 aa15.13■□□□□ 0.01
SKA2-204ENST00000578519 HDGFP51858 240 aaKnown RBP15.12■□□□□ 0.01
SKA2-204ENST00000578519 ZFYVE9O95405 1425 aa15.11■□□□□ 0.01
SKA2-204ENST00000578519 IDI1Q13907 227 aa15.11■□□□□ 0.01
SKA2-204ENST00000578519 UGGT1Q9NYU2 1555 aa15.11■□□□□ 0.01
SKA2-204ENST00000578519 SETBP1Q9Y6X0 1596 aa15.11■□□□□ 0.01
SKA2-204ENST00000578519 TMC1Q8TDI8 760 aa15.1■□□□□ 0.01
SKA2-204ENST00000578519 MYBBP1AQ9BQG0 1328 aaKnown RBP15.1■□□□□ 0.01
SKA2-204ENST00000578519 ARHGEF40Q8TER5 1519 aa15.09■□□□□ 0.01
SKA2-204ENST00000578519 KIF13AQ9H1H9 1805 aa15.09■□□□□ 0.01
SKA2-204ENST00000578519 IQGAP1P46940 1657 aa15.09■□□□□ 0.01
SKA2-204ENST00000578519 PIK3C2BO00750 1634 aa15.08■□□□□ 0
SKA2-204ENST00000578519 HOXD11P31277 338 aaPredicted RBP15.08■□□□□ 0
SKA2-204ENST00000578519 HNRNPUQ00839 825 aaKnown RBP eCLIP15.08■□□□□ 0
SKA2-204ENST00000578519 IFT172Q9UG01 1749 aa15.08■□□□□ 0
SKA2-204ENST00000578519 SBNO2Q9Y2G9 1366 aa15.08■□□□□ 0
SKA2-204ENST00000578519 PUS7Q96PZ0 661 aaKnown RBP15.07■□□□□ 0
SKA2-204ENST00000578519 KNSTRNQ9Y448 316 aa15.07■□□□□ 0
SKA2-204ENST00000578519 CENPJQ9HC77 1338 aaPredicted RBP15.07■□□□□ 0
SKA2-204ENST00000578519 BRD4O60885 1362 aaPredicted RBP15.07■□□□□ 0
SKA2-204ENST00000578519 DISP3Q9P2K9 1392 aa15.07■□□□□ 0
SKA2-204ENST00000578519 PIK3C2GO75747 1445 aa15.07■□□□□ 0
SKA2-204ENST00000578519 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.06■□□□□ 0
SKA2-204ENST00000578519 PANK3Q9H999 370 aa15.06■□□□□ 0
SKA2-204ENST00000578519 ERVK-7P63135 1459 aa15.06■□□□□ 0
SKA2-204ENST00000578519 SYNMO15061 1565 aa15.06■□□□□ 0
SKA2-204ENST00000578519 FAM9BQ8IZU0 186 aa15.05■□□□□ -0
SKA2-204ENST00000578519 PPLO60437 1756 aa15.04■□□□□ -0
SKA2-204ENST00000578519 MROH2AA6NES4 1674 aa15.04■□□□□ -0
SKA2-204ENST00000578519 PREX1Q8TCU6 1659 aa15.04■□□□□ -0
SKA2-204ENST00000578519 NEFLP07196 543 aa15.04■□□□□ -0
SKA2-204ENST00000578519 MLECQ14165 292 aa15.04■□□□□ -0
SKA2-204ENST00000578519 NLRP13Q86W25 1043 aa15.04■□□□□ -0
SKA2-204ENST00000578519 PER1O15534 1290 aaPredicted RBP15.03■□□□□ -0
SKA2-204ENST00000578519 PELP1Q8IZL8 1130 aaKnown RBP15.01□□□□□ -0.01
SKA2-204ENST00000578519 CFAP65Q6ZU64 1925 aaKnown RBP15.01□□□□□ -0.01
SKA2-204ENST00000578519 NEXMIFQ5QGS0 1516 aa15.01□□□□□ -0.01
SKA2-204ENST00000578519 SIGLEC1Q9BZZ2 1709 aa15□□□□□ -0.01
SKA2-204ENST00000578519 ZMYM3Q14202 1370 aa15□□□□□ -0.01
SKA2-204ENST00000578519 PARD3Q8TEW0 1356 aa15□□□□□ -0.01
SKA2-204ENST00000578519 TRHP20396 242 aaPredicted RBP15□□□□□ -0.01
SKA2-204ENST00000578519 FBXO31Q5XUX0 539 aaPredicted RBP15□□□□□ -0.01
SKA2-204ENST00000578519 TRAK1Q9UPV9 953 aa15□□□□□ -0.01
SKA2-204ENST00000578519 NPC1L1Q9UHC9 1359 aa14.99□□□□□ -0.01
SKA2-204ENST00000578519 SPATA31D1Q6ZQQ2 1576 aa14.99□□□□□ -0.01
SKA2-204ENST00000578519 EVC2Q86UK5 1308 aa14.99□□□□□ -0.01
SKA2-204ENST00000578519 CNGB1Q14028 1251 aaPredicted RBP14.99□□□□□ -0.01
SKA2-204ENST00000578519 ZBED9Q6R2W3 1325 aa14.98□□□□□ -0.01
SKA2-204ENST00000578519 TMEM131LA2VDJ0 1609 aa14.98□□□□□ -0.01
SKA2-204ENST00000578519 MYO3AQ8NEV4 1616 aa14.98□□□□□ -0.01
SKA2-204ENST00000578519 CLTCQ00610 1675 aaKnown RBP14.97□□□□□ -0.01
SKA2-204ENST00000578519 KDM5AP29375 1690 aaKnown RBP14.97□□□□□ -0.01
SKA2-204ENST00000578519 CCDC184Q52MB2 194 aa14.96□□□□□ -0.01
SKA2-204ENST00000578519 PNISRQ8TF01 805 aaKnown RBP14.96□□□□□ -0.01
SKA2-204ENST00000578519 INSRP06213 1382 aa14.96□□□□□ -0.02
SKA2-204ENST00000578519 CC2D1BQ5T0F9 858 aaKnown RBP14.95□□□□□ -0.02
SKA2-204ENST00000578519 TMEM132EQ6IEE7 984 aa14.95□□□□□ -0.02
SKA2-204ENST00000578519 TNRQ92752 1358 aa14.95□□□□□ -0.02
SKA2-204ENST00000578519 ADGRB1O14514 1584 aa14.94□□□□□ -0.02
SKA2-204ENST00000578519 POGKQ9P215 609 aa14.94□□□□□ -0.02
SKA2-204ENST00000578519 RIMS2Q9UQ26 1411 aa14.93□□□□□ -0.02
SKA2-204ENST00000578519 NUTM2DQ5VT03 806 aaPredicted RBP14.93□□□□□ -0.02
SKA2-204ENST00000578519 NINLQ9Y2I6 1382 aa14.93□□□□□ -0.02
SKA2-204ENST00000578519 ASXL1Q8IXJ9 1541 aa14.92□□□□□ -0.02
SKA2-204ENST00000578519 A2ML1A8K2U0 1454 aa14.92□□□□□ -0.02
SKA2-204ENST00000578519 LRPPRCP42704 1394 aaKnown RBP14.89□□□□□ -0.03
SKA2-204ENST00000578519 AMER1Q5JTC6 1135 aaPredicted RBP14.89□□□□□ -0.03
SKA2-204ENST00000578519 CNKSR2Q8WXI2 1034 aa14.89□□□□□ -0.03
SKA2-204ENST00000578519 YTHDC2Q9H6S0 1430 aaKnown RBP14.89□□□□□ -0.03
SKA2-204ENST00000578519 NLRP1Q9C000 1473 aa14.89□□□□□ -0.03
SKA2-204ENST00000578519 ATAD2Q6PL18 1390 aa14.88□□□□□ -0.03
SKA2-204ENST00000578519 WDR43Q15061 677 aaKnown RBP eCLIP14.88□□□□□ -0.03
SKA2-204ENST00000578519 ERICH6BQ5W0A0 696 aa14.88□□□□□ -0.03
SKA2-204ENST00000578519 SIRT1Q96EB6 747 aa14.88□□□□□ -0.03
SKA2-204ENST00000578519 STK26Q9P289 416 aa14.88□□□□□ -0.03
SKA2-204ENST00000578519 PDE3BQ13370 1112 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms