RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GOLGA2Q08379 1002 aa9.39□□□□□ -0.91
VPS53-219ENST00000576019 TMEM106CQ9BVX2 250 aa9.39□□□□□ -0.91
VPS53-219ENST00000576019 KIAA0586Q9BVV6 1533 aa9.39□□□□□ -0.91
VPS53-219ENST00000576019 LOC105371045A0A1W2PR82 267 aa9.38□□□□□ -0.91
VPS53-219ENST00000576019 DSG2Q14126 1118 aa9.38□□□□□ -0.91
VPS53-219ENST00000576019 GZF1Q9H116 711 aaPredicted RBP9.38□□□□□ -0.91
VPS53-219ENST00000576019 WIZO95785 1651 aa9.38□□□□□ -0.91
VPS53-219ENST00000576019 HSPA1LP34931 641 aa9.37□□□□□ -0.91
VPS53-219ENST00000576019 MFAP1P55081 439 aaKnown RBP9.37□□□□□ -0.91
VPS53-219ENST00000576019 SH3D19Q5HYK7 790 aa9.37□□□□□ -0.91
VPS53-219ENST00000576019 FOXD4L5Q5VV16 416 aaPredicted RBP9.37□□□□□ -0.91
VPS53-219ENST00000576019 FOXD4L4Q8WXT5 416 aaPredicted RBP9.37□□□□□ -0.91
VPS53-219ENST00000576019 PLB1Q6P1J6 1458 aa9.36□□□□□ -0.91
VPS53-219ENST00000576019 UBAP1LF5GYI3 381 aa9.36□□□□□ -0.91
VPS53-219ENST00000576019 C7P10643 843 aa9.36□□□□□ -0.91
VPS53-219ENST00000576019 HIC1Q14526 733 aa9.36□□□□□ -0.91
VPS53-219ENST00000576019 SLC39A7Q92504 469 aa9.36□□□□□ -0.91
VPS53-219ENST00000576019 REPIN1Q9BWE0 567 aaKnown RBP9.36□□□□□ -0.91
VPS53-219ENST00000576019 RIMS1Q86UR5 1692 aaKnown RBP9.36□□□□□ -0.91
VPS53-219ENST00000576019 FCHSD2O94868 740 aa9.35□□□□□ -0.91
VPS53-219ENST00000576019 RBM25P49756 843 aaKnown RBP9.35□□□□□ -0.91
VPS53-219ENST00000576019 IRF5Q13568 498 aa9.35□□□□□ -0.91
VPS53-219ENST00000576019 ASXL2Q76L83 1435 aa9.35□□□□□ -0.91
VPS53-219ENST00000576019 ZNF428Q96B54 188 aa9.35□□□□□ -0.91
VPS53-219ENST00000576019 RGS17Q9UGC6 210 aaPredicted RBP9.35□□□□□ -0.91
VPS53-219ENST00000576019 TRIM35Q9UPQ4 493 aa9.35□□□□□ -0.91
VPS53-219ENST00000576019 IGSF3O75054 1194 aa9.34□□□□□ -0.91
VPS53-219ENST00000576019 ATP1B4Q9UN42 357 aaPredicted RBP9.34□□□□□ -0.91
VPS53-219ENST00000576019 CFAP43Q8NDM7 1665 aa9.34□□□□□ -0.91
VPS53-219ENST00000576019 IER5LQ5T953 404 aa9.33□□□□□ -0.92
VPS53-219ENST00000576019 PLSCR2Q9NRY7 297 aa9.33□□□□□ -0.92
VPS53-219ENST00000576019 METRNQ9UJH8 293 aa9.33□□□□□ -0.92
VPS53-219ENST00000576019 OSBPP22059 807 aa9.32□□□□□ -0.92
VPS53-219ENST00000576019 OXER1Q8TDS5 423 aa9.32□□□□□ -0.92
VPS53-219ENST00000576019 SETD1AO15047 1707 aaKnown RBP9.31□□□□□ -0.92
VPS53-219ENST00000576019 EPRSP07814 1512 aaKnown RBP9.31□□□□□ -0.92
VPS53-219ENST00000576019 COG6Q9Y2V7 657 aa9.3□□□□□ -0.92
VPS53-219ENST00000576019 PROCA1Q8NCQ7 364 aaPredicted RBP9.29□□□□□ -0.92
VPS53-219ENST00000576019 FGD5Q6ZNL6 1462 aa9.28□□□□□ -0.92
VPS53-219ENST00000576019 ABCC2Q92887 1545 aa9.28□□□□□ -0.92
VPS53-219ENST00000576019 SKIV2LQ15477 1246 aaKnown RBP9.28□□□□□ -0.92
VPS53-219ENST00000576019 LHX8Q68G74 356 aa9.28□□□□□ -0.92
VPS53-219ENST00000576019 FBXW7Q969H0 707 aa9.28□□□□□ -0.92
VPS53-219ENST00000576019 JPH4Q96JJ6 628 aa9.28□□□□□ -0.92
VPS53-219ENST00000576019 PREX1Q8TCU6 1659 aa9.28□□□□□ -0.92
VPS53-219ENST00000576019 ADAMTS12P58397 1594 aa9.28□□□□□ -0.92
VPS53-219ENST00000576019 POTEFA5A3E0 1075 aa9.27□□□□□ -0.93
VPS53-219ENST00000576019 ZNF330Q9Y3S2 320 aaPredicted RBP9.27□□□□□ -0.93
VPS53-219ENST00000576019 MAP3K9P80192 1104 aa9.26□□□□□ -0.93
VPS53-219ENST00000576019 FOXK1P85037 733 aa9.26□□□□□ -0.93
VPS53-219ENST00000576019 TMC2Q8TDI7 906 aa9.26□□□□□ -0.93
VPS53-219ENST00000576019 DDX12PQ92771 950 aa9.26□□□□□ -0.93
VPS53-219ENST00000576019 POLR3EQ9NVU0 708 aa9.26□□□□□ -0.93
VPS53-219ENST00000576019 ABCA5Q8WWZ7 1642 aa9.26□□□□□ -0.93
VPS53-219ENST00000576019 SPDYE5A6NIY4 337 aa9.25□□□□□ -0.93
VPS53-219ENST00000576019 PRIM1P49642 420 aaKnown RBP9.25□□□□□ -0.93
VPS53-219ENST00000576019 PTGDRQ13258 359 aa9.25□□□□□ -0.93
VPS53-219ENST00000576019 IRX5P78411 483 aaPredicted RBP9.24□□□□□ -0.93
VPS53-219ENST00000576019 MDM2Q00987 491 aaPredicted RBP9.24□□□□□ -0.93
VPS53-219ENST00000576019 PLPP6Q8IY26 295 aa9.24□□□□□ -0.93
VPS53-219ENST00000576019 UPF1Q92900 1129 aaKnown RBP eCLIP9.24□□□□□ -0.93
VPS53-219ENST00000576019 COLQQ9Y215 455 aaPredicted RBP9.24□□□□□ -0.93
VPS53-219ENST00000576019 POTEB2H3BUK9 544 aa9.23□□□□□ -0.93
VPS53-219ENST00000576019 CLCN1P35523 988 aa9.23□□□□□ -0.93
VPS53-219ENST00000576019 SNRKQ9NRH2 765 aa9.23□□□□□ -0.93
VPS53-219ENST00000576019 MAGI3Q5TCQ9 1506 aa9.22□□□□□ -0.93
VPS53-219ENST00000576019 SEC24BO95487 1268 aa9.22□□□□□ -0.93
VPS53-219ENST00000576019 POTEAQ6S8J7 498 aa9.22□□□□□ -0.93
VPS53-219ENST00000576019 BEGAINQ9BUH8 593 aa9.22□□□□□ -0.93
VPS53-219ENST00000576019 TMUB1Q9BVT8 246 aa9.22□□□□□ -0.93
VPS53-219ENST00000576019 GPCPD1Q9NPB8 672 aa9.22□□□□□ -0.93
VPS53-219ENST00000576019 SSTR3P32745 418 aaPredicted RBP9.21□□□□□ -0.94
VPS53-219ENST00000576019 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.21□□□□□ -0.942e-10■■□□□ 12.8
VPS53-219ENST00000576019 CUL7Q14999 1698 aa9.2□□□□□ -0.94
VPS53-219ENST00000576019 PPP1R15AO75807 674 aaPredicted RBP9.2□□□□□ -0.94
VPS53-219ENST00000576019 PLCG2P16885 1265 aa9.2□□□□□ -0.94
VPS53-219ENST00000576019 OCEL1Q9H607 264 aa9.2□□□□□ -0.94
VPS53-219ENST00000576019 TOP2AP11388 1531 aaKnown RBP9.2□□□□□ -0.94
VPS53-219ENST00000576019 MICALL2Q8IY33 904 aa9.19□□□□□ -0.94
VPS53-219ENST00000576019 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS53-219ENST00000576019 RUSC2Q8N2Y8 1516 aa9.19□□□□□ -0.94
VPS53-219ENST00000576019 ARAP3Q8WWN8 1544 aa9.19□□□□□ -0.94
VPS53-219ENST00000576019 POTEJP0CG39 1038 aa9.18□□□□□ -0.94
VPS53-219ENST00000576019 TTC37Q6PGP7 1564 aa9.18□□□□□ -0.94
VPS53-219ENST00000576019 CALR3Q96L12 384 aaKnown RBP9.18□□□□□ -0.94
VPS53-219ENST00000576019 PHOX2BQ99453 314 aa9.18□□□□□ -0.94
VPS53-219ENST00000576019 E9PSI1 815 aa9.17□□□□□ -0.94
VPS53-219ENST00000576019 PTGER2P43116 358 aa9.17□□□□□ -0.94
VPS53-219ENST00000576019 MYSM1Q5VVJ2 828 aa9.17□□□□□ -0.94
VPS53-219ENST00000576019 DPY19L2Q6NUT2 758 aa9.17□□□□□ -0.94
VPS53-219ENST00000576019 PDCD7Q8N8D1 485 aaKnown RBP9.17□□□□□ -0.94
VPS53-219ENST00000576019 GDPD2Q9HCC8 539 aa9.17□□□□□ -0.94
VPS53-219ENST00000576019 ARID4BQ4LE39 1312 aaPredicted RBP9.16□□□□□ -0.94
VPS53-219ENST00000576019 ACIN1Q9UKV3 1341 aaKnown RBP9.16□□□□□ -0.94
VPS53-219ENST00000576019 C2orf72A6NCS6 295 aa9.16□□□□□ -0.94
VPS53-219ENST00000576019 TBC1D12O60347 775 aa9.16□□□□□ -0.94
VPS53-219ENST00000576019 RFC5P40937 340 aa9.16□□□□□ -0.94
VPS53-219ENST00000576019 CDHR5Q9HBB8 845 aa9.16□□□□□ -0.94
VPS53-219ENST00000576019 FHAD1B1AJZ9 1412 aa9.15□□□□□ -0.94
VPS53-219ENST00000576019 CLK2P49760 499 aaKnown RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms