RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 PIK3C2BO00750 1634 aa16.33■□□□□ 0.2
CHD3-216ENST00000573936 ALKQ9UM73 1620 aa16.33■□□□□ 0.2
CHD3-216ENST00000573936 SLIT1O75093 1534 aa16.31■□□□□ 0.2
CHD3-216ENST00000573936 ARHGAP23Q9P227 1491 aa16.31■□□□□ 0.2
CHD3-216ENST00000573936 LRRC7Q96NW7 1537 aa16.3■□□□□ 0.2
CHD3-216ENST00000573936 LTKP29376 864 aa16.27■□□□□ 0.2
CHD3-216ENST00000573936 KDM5AP29375 1690 aaKnown RBP16.27■□□□□ 0.19
CHD3-216ENST00000573936 CHGAP10645 457 aaKnown RBP16.26■□□□□ 0.19
CHD3-216ENST00000573936 HDGFP51858 240 aaKnown RBP16.26■□□□□ 0.19
CHD3-216ENST00000573936 EID1Q9Y6B2 187 aa16.26■□□□□ 0.19
CHD3-216ENST00000573936 TXNDC2Q86VQ3 553 aa16.25■□□□□ 0.19
CHD3-216ENST00000573936 SPHKAPQ2M3C7 1700 aa16.25■□□□□ 0.19
CHD3-216ENST00000573936 TMEM2Q9UHN6 1383 aa16.25■□□□□ 0.19
CHD3-216ENST00000573936 ADGRB3O60242 1522 aa16.24■□□□□ 0.19
CHD3-216ENST00000573936 TRPM2O94759 1503 aa16.24■□□□□ 0.19
CHD3-216ENST00000573936 FOXD1Q16676 465 aa16.23■□□□□ 0.19
CHD3-216ENST00000573936 XIRP1Q702N8 1843 aaKnown RBP16.23■□□□□ 0.19
CHD3-216ENST00000573936 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.21■□□□□ 0.19
CHD3-216ENST00000573936 TMEM131LA2VDJ0 1609 aa16.19■□□□□ 0.18
CHD3-216ENST00000573936 CCDC144AA2RUR9 1427 aa16.19■□□□□ 0.18
CHD3-216ENST00000573936 ZNF326Q5BKZ1 582 aaKnown RBP16.18■□□□□ 0.18
CHD3-216ENST00000573936 CLTCL1P53675 1640 aa16.17■□□□□ 0.18
CHD3-216ENST00000573936 RIMS2Q9UQ26 1411 aa16.17■□□□□ 0.18
CHD3-216ENST00000573936 PPP1R15AO75807 674 aaPredicted RBP16.16■□□□□ 0.18
CHD3-216ENST00000573936 MYO5BQ9ULV0 1848 aa16.16■□□□□ 0.18
CHD3-216ENST00000573936 RPGRIP1LQ68CZ1 1315 aa16.15■□□□□ 0.18
CHD3-216ENST00000573936 NWD1Q149M9 1564 aa16.14■□□□□ 0.17
CHD3-216ENST00000573936 ZFYVE9O95405 1425 aa16.14■□□□□ 0.17
CHD3-216ENST00000573936 SLC26A8Q96RN1 970 aa16.14■□□□□ 0.17
CHD3-216ENST00000573936 TMEM94Q12767 1356 aa16.13■□□□□ 0.17
CHD3-216ENST00000573936 ANKRD30BQ9BXX2 1392 aa16.13■□□□□ 0.17
CHD3-216ENST00000573936 KIF1BO60333 1816 aa16.13■□□□□ 0.17
CHD3-216ENST00000573936 BCANQ96GW7 911 aa16.13■□□□□ 0.17
CHD3-216ENST00000573936 NKTRP30414 1462 aaKnown RBP16.12■□□□□ 0.17
CHD3-216ENST00000573936 PLEKHG1Q9ULL1 1385 aa16.12■□□□□ 0.17
CHD3-216ENST00000573936 VGFO15240 615 aaPredicted RBP16.1■□□□□ 0.17
CHD3-216ENST00000573936 RBM33Q96EV2 1170 aaKnown RBP16.1■□□□□ 0.17
CHD3-216ENST00000573936 ROBO1Q9Y6N7 1651 aa16.09■□□□□ 0.17
CHD3-216ENST00000573936 KCNA6P17658 529 aa16.09■□□□□ 0.17
CHD3-216ENST00000573936 NUTM2DQ5VT03 806 aaPredicted RBP16.09■□□□□ 0.17
CHD3-216ENST00000573936 PCGF6Q9BYE7 350 aa16.09■□□□□ 0.17
CHD3-216ENST00000573936 RGL3Q3MIN7 710 aa16.08■□□□□ 0.16
CHD3-216ENST00000573936 PROSER2Q86WR7 435 aaPredicted RBP16.08■□□□□ 0.16
CHD3-216ENST00000573936 RGS17Q9UGC6 210 aaPredicted RBP16.08■□□□□ 0.16
CHD3-216ENST00000573936 FAM135BQ49AJ0 1406 aa16.07■□□□□ 0.16
CHD3-216ENST00000573936 SPATA31E1Q6ZUB1 1445 aa16.07■□□□□ 0.16
CHD3-216ENST00000573936 NEXMIFQ5QGS0 1516 aa16.06■□□□□ 0.16
CHD3-216ENST00000573936 TBX22Q9Y458 520 aa16.06■□□□□ 0.16
CHD3-216ENST00000573936 CHD2O14647 1828 aaKnown RBP16.05■□□□□ 0.16
CHD3-216ENST00000573936 MSH6P52701 1360 aa16.04■□□□□ 0.16
CHD3-216ENST00000573936 DHX57Q6P158 1386 aaKnown RBP16.04■□□□□ 0.16
CHD3-216ENST00000573936 STAC3Q96MF2 364 aa16.03■□□□□ 0.16
CHD3-216ENST00000573936 POTEAQ6S8J7 498 aa16.02■□□□□ 0.16
CHD3-216ENST00000573936 DIP2AQ14689 1571 aa16.01■□□□□ 0.15
CHD3-216ENST00000573936 ADAMTS13Q76LX8 1427 aa16.01■□□□□ 0.15
CHD3-216ENST00000573936 PIK3R4Q99570 1358 aa16■□□□□ 0.15
CHD3-216ENST00000573936 SETBP1Q9Y6X0 1596 aa16■□□□□ 0.15
CHD3-216ENST00000573936 PHLPP1O60346 1717 aa15.99■□□□□ 0.15
CHD3-216ENST00000573936 PPLO60437 1756 aa15.99■□□□□ 0.15
CHD3-216ENST00000573936 SLAIN2Q9P270 581 aa15.98■□□□□ 0.15
CHD3-216ENST00000573936 ADGRF5Q8IZF2 1346 aa15.97■□□□□ 0.15
CHD3-216ENST00000573936 DCAF11Q8TEB1 546 aa15.96■□□□□ 0.15
CHD3-216ENST00000573936 C14orf37Q86TY3 774 aa15.95■□□□□ 0.14
CHD3-216ENST00000573936 MYOM2P54296 1465 aa15.95■□□□□ 0.14
CHD3-216ENST00000573936 COL16A1Q07092 1604 aaPredicted RBP15.94■□□□□ 0.14
CHD3-216ENST00000573936 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.94■□□□□ 0.14
CHD3-216ENST00000573936 IFT172Q9UG01 1749 aa15.94■□□□□ 0.14
CHD3-216ENST00000573936 NEUROD1Q13562 356 aa15.94■□□□□ 0.14
CHD3-216ENST00000573936 MEX3CQ5U5Q3 659 aaKnown RBP15.94■□□□□ 0.14
CHD3-216ENST00000573936 SIN3AQ96ST3 1273 aa15.94■□□□□ 0.14
CHD3-216ENST00000573936 KDM2AQ9Y2K7 1162 aa15.94■□□□□ 0.14
CHD3-216ENST00000573936 NRXN3Q9Y4C0 1643 aa15.94■□□□□ 0.14
CHD3-216ENST00000573936 JCADQ9P266 1359 aa15.93■□□□□ 0.14
CHD3-216ENST00000573936 AMOTL2Q9Y2J4 779 aa15.93■□□□□ 0.14
CHD3-216ENST00000573936 METP08581 1390 aa15.92■□□□□ 0.14
CHD3-216ENST00000573936 PIK3C2GO75747 1445 aa15.92■□□□□ 0.14
CHD3-216ENST00000573936 PTPRUQ92729 1446 aa15.92■□□□□ 0.14
CHD3-216ENST00000573936 NCOA3Q9Y6Q9 1424 aa15.92■□□□□ 0.14
CHD3-216ENST00000573936 NRXN1Q9ULB1 1477 aa15.91■□□□□ 0.14
CHD3-216ENST00000573936 XRN1Q8IZH2 1706 aaKnown RBP15.91■□□□□ 0.14
CHD3-216ENST00000573936 C14orf93Q9H972 538 aaKnown RBP15.91■□□□□ 0.14
CHD3-216ENST00000573936 CLSPNQ9HAW4 1339 aa15.9■□□□□ 0.14
CHD3-216ENST00000573936 ZNF772Q68DY9 489 aaPredicted RBP15.89■□□□□ 0.13
CHD3-216ENST00000573936 AHDC1Q5TGY3 1603 aaPredicted RBP15.89■□□□□ 0.13
CHD3-216ENST00000573936 ATF3P18847 181 aa15.88■□□□□ 0.13
CHD3-216ENST00000573936 L3MBTL2Q969R5 705 aa15.88■□□□□ 0.13
CHD3-216ENST00000573936 CFAP70Q5T0N1 1121 aa15.87■□□□□ 0.13
CHD3-216ENST00000573936 CADPS2Q86UW7 1296 aa15.87■□□□□ 0.13
CHD3-216ENST00000573936 SETD1AO15047 1707 aaKnown RBP15.87■□□□□ 0.13
CHD3-216ENST00000573936 SPATA31A6Q5VVP1 1343 aa15.87■□□□□ 0.13
CHD3-216ENST00000573936 LRP6O75581 1613 aa15.86■□□□□ 0.13
CHD3-216ENST00000573936 C19orf44Q9H6X5 657 aa15.86■□□□□ 0.13
CHD3-216ENST00000573936 LAMC1P11047 1609 aa15.85■□□□□ 0.13
CHD3-216ENST00000573936 SHPRHQ149N8 1683 aa15.85■□□□□ 0.13
CHD3-216ENST00000573936 TONSLQ96HA7 1378 aa15.85■□□□□ 0.13
CHD3-216ENST00000573936 DCCP43146 1447 aa15.85■□□□□ 0.13
CHD3-216ENST00000573936 TMEM132EQ6IEE7 984 aa15.84■□□□□ 0.13
CHD3-216ENST00000573936 CCER1Q8TC90 406 aaPredicted RBP15.84■□□□□ 0.13
CHD3-216ENST00000573936 LRPPRCP42704 1394 aaKnown RBP15.84■□□□□ 0.13
CHD3-216ENST00000573936 PRAG1Q86YV5 1406 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms