RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 SLC52A1Q9NWF4 448 aa23.51■■□□□ 1.35
CHD3-215ENST00000572750 ARHGAP23Q9P227 1491 aa23.5■■□□□ 1.35
CHD3-215ENST00000572750 POTEAQ6S8J7 498 aa23.5■■□□□ 1.35
CHD3-215ENST00000572750 LRRC7Q96NW7 1537 aa23.49■■□□□ 1.35
CHD3-215ENST00000572750 FOXD1Q16676 465 aa23.49■■□□□ 1.35
CHD3-215ENST00000572750 STAG3Q9UJ98 1225 aa23.49■■□□□ 1.35
CHD3-215ENST00000572750 MPHOSPH9Q99550 1183 aa23.48■■□□□ 1.35
CHD3-215ENST00000572750 IQGAP1P46940 1657 aa23.48■■□□□ 1.35
CHD3-215ENST00000572750 MED14O60244 1454 aa23.47■■□□□ 1.35
CHD3-215ENST00000572750 SCAF11Q99590 1463 aaKnown RBP23.47■■□□□ 1.35
CHD3-215ENST00000572750 KIF1BO60333 1816 aa23.46■■□□□ 1.35
CHD3-215ENST00000572750 TMEM2Q9UHN6 1383 aa23.46■■□□□ 1.35
CHD3-215ENST00000572750 ACIN1Q9UKV3 1341 aaKnown RBP23.46■■□□□ 1.35
CHD3-215ENST00000572750 SRCAPQ6ZRS2 3230 aa23.45■■□□□ 1.34
CHD3-215ENST00000572750 NPHP4O75161 1426 aaPredicted RBP23.45■■□□□ 1.34
CHD3-215ENST00000572750 TRIM26Q12899 539 aaPredicted RBP23.44■■□□□ 1.34
CHD3-215ENST00000572750 ANKLE2Q86XL3 938 aa23.44■■□□□ 1.34
CHD3-215ENST00000572750 CHGAP10645 457 aaKnown RBP23.42■■□□□ 1.34
CHD3-215ENST00000572750 SETD1AO15047 1707 aaKnown RBP23.41■■□□□ 1.34
CHD3-215ENST00000572750 ZFYVE9O95405 1425 aa23.41■■□□□ 1.34
CHD3-215ENST00000572750 HRCP23327 699 aa23.39■■□□□ 1.33
CHD3-215ENST00000572750 LTKP29376 864 aa23.39■■□□□ 1.33
CHD3-215ENST00000572750 RIMS2Q9UQ26 1411 aa23.39■■□□□ 1.33
CHD3-215ENST00000572750 CCDC144AA2RUR9 1427 aa23.37■■□□□ 1.33
CHD3-215ENST00000572750 TXNDC2Q86VQ3 553 aa23.37■■□□□ 1.33
CHD3-215ENST00000572750 EID1Q9Y6B2 187 aa23.35■■□□□ 1.33
CHD3-215ENST00000572750 NEXMIFQ5QGS0 1516 aa23.34■■□□□ 1.33
CHD3-215ENST00000572750 XIRP1Q702N8 1843 aaKnown RBP23.33■■□□□ 1.33
CHD3-215ENST00000572750 NUTM2DQ5VT03 806 aaPredicted RBP23.3■■□□□ 1.32
CHD3-215ENST00000572750 PPLO60437 1756 aa23.29■■□□□ 1.32
CHD3-215ENST00000572750 PPP1R15AO75807 674 aaPredicted RBP23.29■■□□□ 1.32
CHD3-215ENST00000572750 ZNF326Q5BKZ1 582 aaKnown RBP23.29■■□□□ 1.32
CHD3-215ENST00000572750 IFT172Q9UG01 1749 aa23.28■■□□□ 1.32
CHD3-215ENST00000572750 ANKRD30BQ9BXX2 1392 aa23.27■■□□□ 1.32
CHD3-215ENST00000572750 PLEKHG1Q9ULL1 1385 aa23.27■■□□□ 1.32
CHD3-215ENST00000572750 SPATA31E1Q6ZUB1 1445 aa23.27■■□□□ 1.32
CHD3-215ENST00000572750 NRXN3Q9Y4C0 1643 aa23.26■■□□□ 1.31
CHD3-215ENST00000572750 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.24■■□□□ 1.31
CHD3-215ENST00000572750 FAM135BQ49AJ0 1406 aa23.23■■□□□ 1.31
CHD3-215ENST00000572750 SETBP1Q9Y6X0 1596 aa23.23■■□□□ 1.31
CHD3-215ENST00000572750 DIP2AQ14689 1571 aa23.22■■□□□ 1.31
CHD3-215ENST00000572750 HDGFP51858 240 aaKnown RBP23.21■■□□□ 1.31
CHD3-215ENST00000572750 BCANQ96GW7 911 aa23.21■■□□□ 1.31
CHD3-215ENST00000572750 SLC26A8Q96RN1 970 aa23.2■■□□□ 1.3
CHD3-215ENST00000572750 ADAMTS13Q76LX8 1427 aa23.19■■□□□ 1.3
CHD3-215ENST00000572750 NWD1Q149M9 1564 aa23.18■■□□□ 1.3
CHD3-215ENST00000572750 RGL3Q3MIN7 710 aa23.17■■□□□ 1.3
CHD3-215ENST00000572750 UPF1Q92900 1129 aaKnown RBP eCLIP23.17■■□□□ 1.3
CHD3-215ENST00000572750 DHX57Q6P158 1386 aaKnown RBP23.16■■□□□ 1.3
CHD3-215ENST00000572750 ROBO1Q9Y6N7 1651 aa23.16■■□□□ 1.3
CHD3-215ENST00000572750 PCGF6Q9BYE7 350 aa23.15■■□□□ 1.3
CHD3-215ENST00000572750 CHD2O14647 1828 aaKnown RBP23.15■■□□□ 1.3
CHD3-215ENST00000572750 RPGRIP1LQ68CZ1 1315 aa23.14■■□□□ 1.3
CHD3-215ENST00000572750 MYOM2P54296 1465 aa23.1■■□□□ 1.29
CHD3-215ENST00000572750 XRN1Q8IZH2 1706 aaKnown RBP23.09■■□□□ 1.29
CHD3-215ENST00000572750 VGFO15240 615 aaPredicted RBP23.09■■□□□ 1.29
CHD3-215ENST00000572750 NKTRP30414 1462 aaKnown RBP23.09■■□□□ 1.29
CHD3-215ENST00000572750 ADGRF5Q8IZF2 1346 aa23.08■■□□□ 1.28
CHD3-215ENST00000572750 TBX22Q9Y458 520 aa23.07■■□□□ 1.28
CHD3-215ENST00000572750 PIK3C2GO75747 1445 aa23.07■■□□□ 1.28
CHD3-215ENST00000572750 TMEM94Q12767 1356 aa23.06■■□□□ 1.28
CHD3-215ENST00000572750 RBM33Q96EV2 1170 aaKnown RBP23.06■■□□□ 1.28
CHD3-215ENST00000572750 METP08581 1390 aa23.05■■□□□ 1.28
CHD3-215ENST00000572750 PTPRUQ92729 1446 aa23.05■■□□□ 1.28
CHD3-215ENST00000572750 NRXN1Q9ULB1 1477 aa23.05■■□□□ 1.28
CHD3-215ENST00000572750 PIK3R4Q99570 1358 aa23.03■■□□□ 1.28
CHD3-215ENST00000572750 KCNA6P17658 529 aa23.03■■□□□ 1.28
CHD3-215ENST00000572750 LAMC1P11047 1609 aa23.03■■□□□ 1.28
CHD3-215ENST00000572750 ASXL1Q8IXJ9 1541 aa23.03■■□□□ 1.28
CHD3-215ENST00000572750 LRP6O75581 1613 aa23.02■■□□□ 1.28
CHD3-215ENST00000572750 PHLPP1O60346 1717 aa23■■□□□ 1.27
CHD3-215ENST00000572750 SIN3AQ96ST3 1273 aa22.99■■□□□ 1.27
CHD3-215ENST00000572750 JCADQ9P266 1359 aa22.97■■□□□ 1.27
CHD3-215ENST00000572750 DCAF11Q8TEB1 546 aa22.96■■□□□ 1.27
CHD3-215ENST00000572750 COL16A1Q07092 1604 aaPredicted RBP22.95■■□□□ 1.26
CHD3-215ENST00000572750 AMOTL2Q9Y2J4 779 aa22.95■■□□□ 1.26
CHD3-215ENST00000572750 NEUROD1Q13562 356 aa22.94■■□□□ 1.26
CHD3-215ENST00000572750 PROSER2Q86WR7 435 aaPredicted RBP22.94■■□□□ 1.26
CHD3-215ENST00000572750 KDM2AQ9Y2K7 1162 aa22.94■■□□□ 1.26
CHD3-215ENST00000572750 KNDC1Q76NI1 1749 aa22.94■■□□□ 1.26
CHD3-215ENST00000572750 PTCH1Q13635 1447 aa22.91■■□□□ 1.26
CHD3-215ENST00000572750 NALCNQ8IZF0 1738 aa22.91■■□□□ 1.26
CHD3-215ENST00000572750 PRAG1Q86YV5 1406 aa22.91■■□□□ 1.26
CHD3-215ENST00000572750 CFAP70Q5T0N1 1121 aa22.89■■□□□ 1.25
CHD3-215ENST00000572750 SLAIN2Q9P270 581 aa22.89■■□□□ 1.25
CHD3-215ENST00000572750 ADGRB1O14514 1584 aa22.89■■□□□ 1.25
CHD3-215ENST00000572750 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.88■■□□□ 1.25
CHD3-215ENST00000572750 ROBO2Q9HCK4 1378 aa22.88■■□□□ 1.25
CHD3-215ENST00000572750 TMEM132EQ6IEE7 984 aa22.87■■□□□ 1.25
CHD3-215ENST00000572750 C14orf93Q9H972 538 aaKnown RBP22.87■■□□□ 1.25
CHD3-215ENST00000572750 KIAA1210Q9ULL0 1709 aa22.87■■□□□ 1.25
CHD3-215ENST00000572750 YTHDC2Q9H6S0 1430 aaKnown RBP22.86■■□□□ 1.25
CHD3-215ENST00000572750 ZNF772Q68DY9 489 aaPredicted RBP22.86■■□□□ 1.25
CHD3-215ENST00000572750 L3MBTL2Q969R5 705 aa22.86■■□□□ 1.25
CHD3-215ENST00000572750 TECPR2O15040 1411 aa22.85■■□□□ 1.25
CHD3-215ENST00000572750 LRPPRCP42704 1394 aaKnown RBP22.85■■□□□ 1.25
CHD3-215ENST00000572750 MSH6P52701 1360 aa22.85■■□□□ 1.25
CHD3-215ENST00000572750 STAC3Q96MF2 364 aa22.84■■□□□ 1.25
CHD3-215ENST00000572750 NCOA3Q9Y6Q9 1424 aa22.83■■□□□ 1.25
CHD3-215ENST00000572750 C14orf37Q86TY3 774 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms