RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 E9PCH4 1651 aa27.66■■■□□ 2.02
CHD3-214ENST00000572579 TMEM94Q12767 1356 aa27.65■■■□□ 2.02
CHD3-214ENST00000572579 NUTM2DQ5VT03 806 aaPredicted RBP27.65■■■□□ 2.02
CHD3-214ENST00000572579 TMEM131LA2VDJ0 1609 aa27.65■■■□□ 2.02
CHD3-214ENST00000572579 IQGAP3Q86VI3 1631 aa27.65■■■□□ 2.02
CHD3-214ENST00000572579 CHGAP10645 457 aaKnown RBP27.64■■■□□ 2.02
CHD3-214ENST00000572579 PLEKHG1Q9ULL1 1385 aa27.63■■■□□ 2.01
CHD3-214ENST00000572579 GCC2Q8IWJ2 1684 aa27.63■■■□□ 2.01
CHD3-214ENST00000572579 BCANQ96GW7 911 aa27.62■■■□□ 2.01
CHD3-214ENST00000572579 PROSER2Q86WR7 435 aaPredicted RBP27.61■■■□□ 2.01
CHD3-214ENST00000572579 XIRP1Q702N8 1843 aaKnown RBP27.61■■■□□ 2.01
CHD3-214ENST00000572579 NAIPQ13075 1403 aa27.58■■■□□ 2
CHD3-214ENST00000572579 PPP1R15AO75807 674 aaPredicted RBP27.57■■■□□ 2
CHD3-214ENST00000572579 TBX22Q9Y458 520 aa27.57■■■□□ 2
CHD3-214ENST00000572579 MYO5BQ9ULV0 1848 aa27.57■■■□□ 2
CHD3-214ENST00000572579 HDGFP51858 240 aaKnown RBP27.56■■■□□ 2
CHD3-214ENST00000572579 ADAMTS13Q76LX8 1427 aa27.56■■■□□ 2
CHD3-214ENST00000572579 SOCS7O14512 581 aa27.55■■■□□ 2
CHD3-214ENST00000572579 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.54■■■□□ 2
CHD3-214ENST00000572579 NWD1Q149M9 1564 aa27.52■■■□□ 2
CHD3-214ENST00000572579 FAM135BQ49AJ0 1406 aa27.5■■□□□ 1.99
CHD3-214ENST00000572579 MED1Q15648 1581 aaPredicted RBP27.49■■□□□ 1.99
CHD3-214ENST00000572579 NKTRP30414 1462 aaKnown RBP27.49■■□□□ 1.99
CHD3-214ENST00000572579 HFM1A2PYH4 1435 aa27.43■■□□□ 1.98
CHD3-214ENST00000572579 PTPRUQ92729 1446 aa27.43■■□□□ 1.98
CHD3-214ENST00000572579 SLAIN2Q9P270 581 aa27.42■■□□□ 1.98
CHD3-214ENST00000572579 CHD2O14647 1828 aaKnown RBP27.41■■□□□ 1.98
CHD3-214ENST00000572579 MSH6P52701 1360 aa27.39■■□□□ 1.98
CHD3-214ENST00000572579 AMOTL2Q9Y2J4 779 aa27.39■■□□□ 1.98
CHD3-214ENST00000572579 TRIM52Q96A61 297 aa27.38■■□□□ 1.97
CHD3-214ENST00000572579 PIK3R4Q99570 1358 aa27.37■■□□□ 1.97
CHD3-214ENST00000572579 ZNF326Q5BKZ1 582 aaKnown RBP27.37■■□□□ 1.97
CHD3-214ENST00000572579 RGS17Q9UGC6 210 aaPredicted RBP27.37■■□□□ 1.97
CHD3-214ENST00000572579 SPHKAPQ2M3C7 1700 aa27.36■■□□□ 1.97
CHD3-214ENST00000572579 METP08581 1390 aa27.35■■□□□ 1.97
CHD3-214ENST00000572579 CLTCL1P53675 1640 aa27.34■■□□□ 1.97
CHD3-214ENST00000572579 NCOA3Q9Y6Q9 1424 aa27.33■■□□□ 1.97
CHD3-214ENST00000572579 TRPM2O94759 1503 aa27.33■■□□□ 1.97
CHD3-214ENST00000572579 NRXN3Q9Y4C0 1643 aa27.33■■□□□ 1.97
CHD3-214ENST00000572579 DIP2AQ14689 1571 aa27.32■■□□□ 1.96
CHD3-214ENST00000572579 FOXD1Q16676 465 aa27.32■■□□□ 1.96
CHD3-214ENST00000572579 SLC4A1APQ9BWU0 796 aaKnown RBP27.32■■□□□ 1.96
CHD3-214ENST00000572579 ROBO1Q9Y6N7 1651 aa27.32■■□□□ 1.96
CHD3-214ENST00000572579 C19orf44Q9H6X5 657 aa27.31■■□□□ 1.96
CHD3-214ENST00000572579 SETBP1Q9Y6X0 1596 aa27.3■■□□□ 1.96
CHD3-214ENST00000572579 PHF23Q9BUL5 403 aaPredicted RBP27.29■■□□□ 1.96
CHD3-214ENST00000572579 NEXMIFQ5QGS0 1516 aa27.28■■□□□ 1.96
CHD3-214ENST00000572579 C14orf37Q86TY3 774 aa27.28■■□□□ 1.96
CHD3-214ENST00000572579 CADPS2Q86UW7 1296 aa27.24■■□□□ 1.95
CHD3-214ENST00000572579 ATF3P18847 181 aa27.22■■□□□ 1.95
CHD3-214ENST00000572579 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.2■■□□□ 1.94
CHD3-214ENST00000572579 XRN1Q8IZH2 1706 aaKnown RBP27.19■■□□□ 1.94
CHD3-214ENST00000572579 BRINP3Q76B58 766 aa27.18■■□□□ 1.94
CHD3-214ENST00000572579 MPHOSPH9Q99550 1183 aa27.18■■□□□ 1.94
CHD3-214ENST00000572579 VGFO15240 615 aaPredicted RBP27.17■■□□□ 1.94
CHD3-214ENST00000572579 RPGRIP1LQ68CZ1 1315 aa27.16■■□□□ 1.94
CHD3-214ENST00000572579 POTEAQ6S8J7 498 aa27.15■■□□□ 1.94
CHD3-214ENST00000572579 JCADQ9P266 1359 aa27.13■■□□□ 1.93
CHD3-214ENST00000572579 COL16A1Q07092 1604 aaPredicted RBP27.12■■□□□ 1.93
CHD3-214ENST00000572579 ROBO2Q9HCK4 1378 aa27.11■■□□□ 1.93
CHD3-214ENST00000572579 DCCP43146 1447 aa27.11■■□□□ 1.93
CHD3-214ENST00000572579 MST1RQ04912 1400 aa27.11■■□□□ 1.93
CHD3-214ENST00000572579 PHLPP1O60346 1717 aa27.1■■□□□ 1.93
CHD3-214ENST00000572579 KIF1BO60333 1816 aa27.1■■□□□ 1.93
CHD3-214ENST00000572579 ADGRF5Q8IZF2 1346 aa27.1■■□□□ 1.93
CHD3-214ENST00000572579 SPATA31E1Q6ZUB1 1445 aa27.08■■□□□ 1.93
CHD3-214ENST00000572579 RGL3Q3MIN7 710 aa27.08■■□□□ 1.93
CHD3-214ENST00000572579 ADGRL3Q9HAR2 1447 aa27.07■■□□□ 1.92
CHD3-214ENST00000572579 DDX17Q92841 729 aaKnown RBP27.07■■□□□ 1.92
CHD3-214ENST00000572579 AHDC1Q5TGY3 1603 aaPredicted RBP27.06■■□□□ 1.92
CHD3-214ENST00000572579 SETD1AO15047 1707 aaKnown RBP27.04■■□□□ 1.92
CHD3-214ENST00000572579 LRP6O75581 1613 aa27.04■■□□□ 1.92
CHD3-214ENST00000572579 CCDC144AA2RUR9 1427 aa27.03■■□□□ 1.92
CHD3-214ENST00000572579 SETD5Q9C0A6 1442 aa27.03■■□□□ 1.92
CHD3-214ENST00000572579 ASXL1Q8IXJ9 1541 aa27.02■■□□□ 1.92
CHD3-214ENST00000572579 PTCH1Q13635 1447 aa27.02■■□□□ 1.92
CHD3-214ENST00000572579 PRAG1Q86YV5 1406 aa27■■□□□ 1.91
CHD3-214ENST00000572579 SPATA31A6Q5VVP1 1343 aa27■■□□□ 1.91
CHD3-214ENST00000572579 PPLO60437 1756 aa26.99■■□□□ 1.91
CHD3-214ENST00000572579 ORAI2Q96SN7 254 aa26.97■■□□□ 1.91
CHD3-214ENST00000572579 C1orf167Q5SNV9 1468 aa26.97■■□□□ 1.91
CHD3-214ENST00000572579 RAB3GAP2Q9H2M9 1393 aa26.97■■□□□ 1.91
CHD3-214ENST00000572579 NALCNQ8IZF0 1738 aa26.96■■□□□ 1.91
CHD3-214ENST00000572579 TMEM132EQ6IEE7 984 aa26.95■■□□□ 1.9
CHD3-214ENST00000572579 ANKRD30BQ9BXX2 1392 aa26.94■■□□□ 1.9
CHD3-214ENST00000572579 WAPLQ7Z5K2 1190 aa26.93■■□□□ 1.9
CHD3-214ENST00000572579 STK26Q9P289 416 aa26.92■■□□□ 1.9
CHD3-214ENST00000572579 NUTM2BA6NNL0 878 aaPredicted RBP26.91■■□□□ 1.9
CHD3-214ENST00000572579 NUTM2EB1AL46 878 aaPredicted RBP26.91■■□□□ 1.9
CHD3-214ENST00000572579 NUTM2AQ8IVF1 878 aaPredicted RBP26.91■■□□□ 1.9
CHD3-214ENST00000572579 LRRC59Q96AG4 307 aaKnown RBP26.9■■□□□ 1.9
CHD3-214ENST00000572579 PIK3C2GO75747 1445 aa26.89■■□□□ 1.89
CHD3-214ENST00000572579 LRPPRCP42704 1394 aaKnown RBP26.88■■□□□ 1.89
CHD3-214ENST00000572579 PLEKHH1Q9ULM0 1364 aa26.88■■□□□ 1.89
CHD3-214ENST00000572579 SHPRHQ149N8 1683 aa26.88■■□□□ 1.89
CHD3-214ENST00000572579 NHSL1Q5SYE7 1610 aa26.87■■□□□ 1.89
CHD3-214ENST00000572579 ABCC11Q96J66 1382 aa26.87■■□□□ 1.89
CHD3-214ENST00000572579 MEX3CQ5U5Q3 659 aaKnown RBP26.87■■□□□ 1.89
CHD3-214ENST00000572579 TECPR2O15040 1411 aa26.87■■□□□ 1.89
CHD3-214ENST00000572579 PNPLA6Q8IY17 1366 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms