RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ZFYVE9O95405 1425 aa10.47□□□□□ -0.73
VPS53-213ENST00000572334 IQGAP3Q86VI3 1631 aa10.46□□□□□ -0.74
VPS53-213ENST00000572334 EID1Q9Y6B2 187 aa10.45□□□□□ -0.74
VPS53-213ENST00000572334 ROCK1Q13464 1354 aa10.44□□□□□ -0.74
VPS53-213ENST00000572334 SLC52A1Q9NWF4 448 aa10.44□□□□□ -0.74
VPS53-213ENST00000572334 TMEM94Q12767 1356 aa10.43□□□□□ -0.74
VPS53-213ENST00000572334 KCNA6P17658 529 aa10.43□□□□□ -0.74
VPS53-213ENST00000572334 SLC26A8Q96RN1 970 aa10.43□□□□□ -0.74
VPS53-213ENST00000572334 STAG3Q9UJ98 1225 aa10.43□□□□□ -0.74
VPS53-213ENST00000572334 ROBO1Q9Y6N7 1651 aa10.42□□□□□ -0.74
VPS53-213ENST00000572334 NKTRP30414 1462 aaKnown RBP10.42□□□□□ -0.74
VPS53-213ENST00000572334 FAM135BQ49AJ0 1406 aa10.41□□□□□ -0.74
VPS53-213ENST00000572334 RBM33Q96EV2 1170 aaKnown RBP10.41□□□□□ -0.74
VPS53-213ENST00000572334 RIMS2Q9UQ26 1411 aa10.41□□□□□ -0.74
VPS53-213ENST00000572334 PLEKHG1Q9ULL1 1385 aa10.4□□□□□ -0.74
VPS53-213ENST00000572334 ADAMTS13Q76LX8 1427 aa10.4□□□□□ -0.75
VPS53-213ENST00000572334 SPHKAPQ2M3C7 1700 aa10.39□□□□□ -0.75
VPS53-213ENST00000572334 RGS17Q9UGC6 210 aaPredicted RBP10.39□□□□□ -0.75
VPS53-213ENST00000572334 NRXN3Q9Y4C0 1643 aa10.39□□□□□ -0.75
VPS53-213ENST00000572334 PIAS4Q8N2W9 510 aaPredicted RBP10.38□□□□□ -0.75
VPS53-213ENST00000572334 PROSER2Q86WR7 435 aaPredicted RBP10.37□□□□□ -0.75
VPS53-213ENST00000572334 PPARGC1BQ86YN6 1023 aaKnown RBP10.37□□□□□ -0.75
VPS53-213ENST00000572334 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.36□□□□□ -0.75
VPS53-213ENST00000572334 DIP2AQ14689 1571 aa10.36□□□□□ -0.75
VPS53-213ENST00000572334 NUP155O75694 1391 aa10.36□□□□□ -0.75
VPS53-213ENST00000572334 PHLPP1O60346 1717 aa10.36□□□□□ -0.75
VPS53-213ENST00000572334 PTPRUQ92729 1446 aa10.35□□□□□ -0.75
VPS53-213ENST00000572334 NUTM2DQ5VT03 806 aaPredicted RBP10.35□□□□□ -0.75
VPS53-213ENST00000572334 TBX22Q9Y458 520 aa10.35□□□□□ -0.75
VPS53-213ENST00000572334 RRBP1Q9P2E9 1410 aaKnown RBP10.34□□□□□ -0.75
VPS53-213ENST00000572334 CLTCL1P53675 1640 aa10.34□□□□□ -0.75
VPS53-213ENST00000572334 COL16A1Q07092 1604 aaPredicted RBP10.34□□□□□ -0.75
VPS53-213ENST00000572334 XRN1Q8IZH2 1706 aaKnown RBP10.34□□□□□ -0.75
VPS53-213ENST00000572334 ITGAEP38570 1179 aa10.34□□□□□ -0.75
VPS53-213ENST00000572334 SETBP1Q9Y6X0 1596 aa10.33□□□□□ -0.76
VPS53-213ENST00000572334 NCOA3Q9Y6Q9 1424 aa10.33□□□□□ -0.76
VPS53-213ENST00000572334 MSH6P52701 1360 aa10.32□□□□□ -0.76
VPS53-213ENST00000572334 PIK3R4Q99570 1358 aa10.32□□□□□ -0.76
VPS53-213ENST00000572334 CHGAP10645 457 aaKnown RBP10.32□□□□□ -0.76
VPS53-213ENST00000572334 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.32□□□□□ -0.76
VPS53-213ENST00000572334 BCANQ96GW7 911 aa10.32□□□□□ -0.76
VPS53-213ENST00000572334 SLAIN2Q9P270 581 aa10.32□□□□□ -0.76
VPS53-213ENST00000572334 KIF1BO60333 1816 aa10.32□□□□□ -0.76
VPS53-213ENST00000572334 TRPM2O94759 1503 aa10.32□□□□□ -0.76
VPS53-213ENST00000572334 NAIPQ13075 1403 aa10.32□□□□□ -0.76
VPS53-213ENST00000572334 SETD1AO15047 1707 aaKnown RBP10.31□□□□□ -0.76
VPS53-213ENST00000572334 PPP1R15AO75807 674 aaPredicted RBP10.31□□□□□ -0.76
VPS53-213ENST00000572334 HDGFP51858 240 aaKnown RBP10.31□□□□□ -0.76
VPS53-213ENST00000572334 NEXMIFQ5QGS0 1516 aa10.31□□□□□ -0.76
VPS53-213ENST00000572334 AHDC1Q5TGY3 1603 aaPredicted RBP10.29□□□□□ -0.76
VPS53-213ENST00000572334 POTEAQ6S8J7 498 aa10.29□□□□□ -0.76
VPS53-213ENST00000572334 SHPRHQ149N8 1683 aa10.28□□□□□ -0.76
VPS53-213ENST00000572334 AMOTL2Q9Y2J4 779 aa10.28□□□□□ -0.76
VPS53-213ENST00000572334 LRP6O75581 1613 aa10.28□□□□□ -0.76
VPS53-213ENST00000572334 METP08581 1390 aa10.27□□□□□ -0.76
VPS53-213ENST00000572334 NALCNQ8IZF0 1738 aa10.27□□□□□ -0.76
VPS53-213ENST00000572334 C19orf44Q9H6X5 657 aa10.27□□□□□ -0.77
VPS53-213ENST00000572334 JCADQ9P266 1359 aa10.26□□□□□ -0.77
VPS53-213ENST00000572334 PPLO60437 1756 aa10.26□□□□□ -0.77
VPS53-213ENST00000572334 NHSL1Q5SYE7 1610 aa10.26□□□□□ -0.77
VPS53-213ENST00000572334 HFM1A2PYH4 1435 aa10.25□□□□□ -0.77
VPS53-213ENST00000572334 DCCP43146 1447 aa10.24□□□□□ -0.77
VPS53-213ENST00000572334 MST1RQ04912 1400 aa10.24□□□□□ -0.77
VPS53-213ENST00000572334 BRINP3Q76B58 766 aa10.24□□□□□ -0.77
VPS53-213ENST00000572334 CADPS2Q86UW7 1296 aa10.24□□□□□ -0.77
VPS53-213ENST00000572334 ASXL1Q8IXJ9 1541 aa10.23□□□□□ -0.77
VPS53-213ENST00000572334 LAMC1P11047 1609 aa10.22□□□□□ -0.77
VPS53-213ENST00000572334 ZNF326Q5BKZ1 582 aaKnown RBP10.22□□□□□ -0.77
VPS53-213ENST00000572334 C14orf37Q86TY3 774 aa10.22□□□□□ -0.77
VPS53-213ENST00000572334 ADGRL3Q9HAR2 1447 aa10.22□□□□□ -0.77
VPS53-213ENST00000572334 IFT172Q9UG01 1749 aa10.21□□□□□ -0.77
VPS53-213ENST00000572334 ATF3P18847 181 aa10.21□□□□□ -0.77
VPS53-213ENST00000572334 PRAG1Q86YV5 1406 aa10.21□□□□□ -0.78
VPS53-213ENST00000572334 SPATA31A6Q5VVP1 1343 aa10.2□□□□□ -0.78
VPS53-213ENST00000572334 SETD5Q9C0A6 1442 aa10.2□□□□□ -0.78
VPS53-213ENST00000572334 PTCH1Q13635 1447 aa10.19□□□□□ -0.78
VPS53-213ENST00000572334 ROBO2Q9HCK4 1378 aa10.19□□□□□ -0.78
VPS53-213ENST00000572334 DDX17Q92841 729 aaKnown RBP10.18□□□□□ -0.78
VPS53-213ENST00000572334 TRIM52Q96A61 297 aa10.17□□□□□ -0.78
VPS53-213ENST00000572334 SLC4A1APQ9BWU0 796 aaKnown RBP10.17□□□□□ -0.78
VPS53-213ENST00000572334 C1orf167Q5SNV9 1468 aa10.17□□□□□ -0.78
VPS53-213ENST00000572334 SPATA31E1Q6ZUB1 1445 aa10.16□□□□□ -0.78
VPS53-213ENST00000572334 PNPLA6Q8IY17 1366 aa10.15□□□□□ -0.78
VPS53-213ENST00000572334 RPGRIP1LQ68CZ1 1315 aa10.15□□□□□ -0.78
VPS53-213ENST00000572334 VGFO15240 615 aaPredicted RBP10.15□□□□□ -0.78
VPS53-213ENST00000572334 KNDC1Q76NI1 1749 aa10.15□□□□□ -0.78
VPS53-213ENST00000572334 ADGRF5Q8IZF2 1346 aa10.14□□□□□ -0.79
VPS53-213ENST00000572334 ORAI2Q96SN7 254 aa10.13□□□□□ -0.79
VPS53-213ENST00000572334 COL22A1Q8NFW1 1626 aaPredicted RBP10.13□□□□□ -0.79
VPS53-213ENST00000572334 CDC42BPGQ6DT37 1551 aa10.13□□□□□ -0.79
VPS53-213ENST00000572334 SOS2Q07890 1332 aaPredicted RBP10.12□□□□□ -0.79
VPS53-213ENST00000572334 RGPD8O14715 1765 aaPredicted RBP10.12□□□□□ -0.79
VPS53-213ENST00000572334 NUTM2BA6NNL0 878 aaPredicted RBP10.12□□□□□ -0.79
VPS53-213ENST00000572334 NUTM2EB1AL46 878 aaPredicted RBP10.12□□□□□ -0.79
VPS53-213ENST00000572334 MEX3CQ5U5Q3 659 aaKnown RBP10.12□□□□□ -0.79
VPS53-213ENST00000572334 ZNF772Q68DY9 489 aaPredicted RBP10.12□□□□□ -0.79
VPS53-213ENST00000572334 NUTM2AQ8IVF1 878 aaPredicted RBP10.12□□□□□ -0.79
VPS53-213ENST00000572334 LRRC59Q96AG4 307 aaKnown RBP10.12□□□□□ -0.79
VPS53-213ENST00000572334 MPHOSPH9Q99550 1183 aa10.12□□□□□ -0.79
VPS53-213ENST00000572334 TECPR2O15040 1411 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms