RNA–Protein interactions for RNA: ENST00000570902.1

SCARF1-204, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 1,060 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-204ENST00000570902 ROBO1Q9Y6N7 1651 aa29.52■■■□□ 2.32
SCARF1-204ENST00000570902 ANKRD50Q9ULJ7 1429 aa29.5■■■□□ 2.31
SCARF1-204ENST00000570902 FAM50AQ14320 339 aaKnown RBP29.48■■■□□ 2.31
SCARF1-204ENST00000570902 RBM33Q96EV2 1170 aaKnown RBP29.48■■■□□ 2.31
SCARF1-204ENST00000570902 MSH6P52701 1360 aa29.48■■■□□ 2.31
SCARF1-204ENST00000570902 HDGFP51858 240 aaKnown RBP29.47■■■□□ 2.31
SCARF1-204ENST00000570902 PLEKHG1Q9ULL1 1385 aa29.45■■■□□ 2.31
SCARF1-204ENST00000570902 ZFYVE9O95405 1425 aa29.45■■■□□ 2.3
SCARF1-204ENST00000570902 PPP1R15AO75807 674 aaPredicted RBP29.43■■■□□ 2.3
SCARF1-204ENST00000570902 SLAIN2Q9P270 581 aa29.41■■■□□ 2.3
SCARF1-204ENST00000570902 RIMS2Q9UQ26 1411 aa29.41■■■□□ 2.3
SCARF1-204ENST00000570902 GCC2Q8IWJ2 1684 aa29.4■■■□□ 2.3
SCARF1-204ENST00000570902 TMEM131LA2VDJ0 1609 aa29.38■■■□□ 2.29
SCARF1-204ENST00000570902 CHD2O14647 1828 aaKnown RBP29.38■■■□□ 2.29
SCARF1-204ENST00000570902 MYO5BQ9ULV0 1848 aa29.38■■■□□ 2.29
SCARF1-204ENST00000570902 POTEAQ6S8J7 498 aa29.36■■■□□ 2.29
SCARF1-204ENST00000570902 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.36■■■□□ 2.29
SCARF1-204ENST00000570902 TBX22Q9Y458 520 aa29.36■■■□□ 2.29
SCARF1-204ENST00000570902 PHLPP1O60346 1717 aa29.35■■■□□ 2.29
SCARF1-204ENST00000570902 NCOA3Q9Y6Q9 1424 aa29.35■■■□□ 2.29
SCARF1-204ENST00000570902 UNC13BO14795 1591 aa29.35■■■□□ 2.29
SCARF1-204ENST00000570902 JCADQ9P266 1359 aa29.34■■■□□ 2.29
SCARF1-204ENST00000570902 CHGAP10645 457 aaKnown RBP29.31■■■□□ 2.28
SCARF1-204ENST00000570902 DIP2AQ14689 1571 aa29.29■■■□□ 2.28
SCARF1-204ENST00000570902 C14orf37Q86TY3 774 aa29.28■■■□□ 2.28
SCARF1-204ENST00000570902 E9PCH4 1651 aa29.27■■■□□ 2.28
SCARF1-204ENST00000570902 ROCK1Q13464 1354 aa29.26■■■□□ 2.28
SCARF1-204ENST00000570902 PIK3R4Q99570 1358 aa29.26■■■□□ 2.28
SCARF1-204ENST00000570902 ADAMTS13Q76LX8 1427 aa29.26■■■□□ 2.27
SCARF1-204ENST00000570902 CADPS2Q86UW7 1296 aa29.24■■■□□ 2.27
SCARF1-204ENST00000570902 COL16A1Q07092 1604 aaPredicted RBP29.23■■■□□ 2.27
SCARF1-204ENST00000570902 IQGAP3Q86VI3 1631 aa29.23■■■□□ 2.27
SCARF1-204ENST00000570902 NUTM2DQ5VT03 806 aaPredicted RBP29.22■■■□□ 2.27
SCARF1-204ENST00000570902 C19orf44Q9H6X5 657 aa29.22■■■□□ 2.27
SCARF1-204ENST00000570902 ATF3P18847 181 aa29.21■■■□□ 2.27
SCARF1-204ENST00000570902 SPATA31A6Q5VVP1 1343 aa29.2■■■□□ 2.27
SCARF1-204ENST00000570902 TRPM2O94759 1503 aa29.19■■■□□ 2.26
SCARF1-204ENST00000570902 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.18■■■□□ 2.26
SCARF1-204ENST00000570902 NUP155O75694 1391 aa29.17■■■□□ 2.26
SCARF1-204ENST00000570902 AHDC1Q5TGY3 1603 aaPredicted RBP29.16■■■□□ 2.26
SCARF1-204ENST00000570902 MEX3CQ5U5Q3 659 aaKnown RBP29.14■■■□□ 2.26
SCARF1-204ENST00000570902 AMOTL2Q9Y2J4 779 aa29.14■■■□□ 2.26
SCARF1-204ENST00000570902 LRP6O75581 1613 aa29.12■■■□□ 2.25
SCARF1-204ENST00000570902 ZNF772Q68DY9 489 aaPredicted RBP29.11■■■□□ 2.25
SCARF1-204ENST00000570902 SHPRHQ149N8 1683 aa29.11■■■□□ 2.25
SCARF1-204ENST00000570902 SETD1AO15047 1707 aaKnown RBP29.11■■■□□ 2.25
SCARF1-204ENST00000570902 DCCP43146 1447 aa29.09■■■□□ 2.25
SCARF1-204ENST00000570902 PTPRUQ92729 1446 aa29.09■■■□□ 2.25
SCARF1-204ENST00000570902 BRINP3Q76B58 766 aa29.06■■■□□ 2.24
SCARF1-204ENST00000570902 SETBP1Q9Y6X0 1596 aa29.05■■■□□ 2.24
SCARF1-204ENST00000570902 ITGAEP38570 1179 aa29.05■■■□□ 2.24
SCARF1-204ENST00000570902 XRN1Q8IZH2 1706 aaKnown RBP29.03■■■□□ 2.24
SCARF1-204ENST00000570902 NRXN3Q9Y4C0 1643 aa29.02■■■□□ 2.24
SCARF1-204ENST00000570902 SPHKAPQ2M3C7 1700 aa29.02■■■□□ 2.24
SCARF1-204ENST00000570902 ZNF326Q5BKZ1 582 aaKnown RBP29.01■■■□□ 2.23
SCARF1-204ENST00000570902 ASXL1Q8IXJ9 1541 aa28.99■■■□□ 2.23
SCARF1-204ENST00000570902 MST1RQ04912 1400 aa28.97■■■□□ 2.23
SCARF1-204ENST00000570902 SETD5Q9C0A6 1442 aa28.96■■■□□ 2.23
SCARF1-204ENST00000570902 TRIM52Q96A61 297 aa28.96■■■□□ 2.23
SCARF1-204ENST00000570902 NUTM2BA6NNL0 878 aaPredicted RBP28.95■■■□□ 2.22
SCARF1-204ENST00000570902 NUTM2EB1AL46 878 aaPredicted RBP28.95■■■□□ 2.22
SCARF1-204ENST00000570902 RXRBP28702 533 aa28.95■■■□□ 2.22
SCARF1-204ENST00000570902 NUTM2AQ8IVF1 878 aaPredicted RBP28.95■■■□□ 2.22
SCARF1-204ENST00000570902 METP08581 1390 aa28.95■■■□□ 2.22
SCARF1-204ENST00000570902 NHSL1Q5SYE7 1610 aa28.93■■■□□ 2.22
SCARF1-204ENST00000570902 UPF1Q92900 1129 aaKnown RBP eCLIP28.92■■■□□ 2.22
SCARF1-204ENST00000570902 LRRC59Q96AG4 307 aaKnown RBP28.92■■■□□ 2.22
SCARF1-204ENST00000570902 ADGRL3Q9HAR2 1447 aa28.91■■■□□ 2.22
SCARF1-204ENST00000570902 CDK12Q9NYV4 1490 aaPredicted RBP28.9■■■□□ 2.22
SCARF1-204ENST00000570902 NEXMIFQ5QGS0 1516 aa28.89■■■□□ 2.21
SCARF1-204ENST00000570902 AFF2P51816 1311 aa28.88■■■□□ 2.21
SCARF1-204ENST00000570902 CLTCL1P53675 1640 aa28.87■■■□□ 2.21
SCARF1-204ENST00000570902 NALCNQ8IZF0 1738 aa28.83■■■□□ 2.21
SCARF1-204ENST00000570902 PPARGC1BQ86YN6 1023 aaKnown RBP28.83■■■□□ 2.21
SCARF1-204ENST00000570902 KIF1BO60333 1816 aa28.82■■■□□ 2.2
SCARF1-204ENST00000570902 PNPLA6Q8IY17 1366 aa28.81■■■□□ 2.2
SCARF1-204ENST00000570902 C8orf37Q96NL8 207 aa28.8■■■□□ 2.2
SCARF1-204ENST00000570902 PTCH1Q13635 1447 aa28.79■■■□□ 2.2
SCARF1-204ENST00000570902 DDX17Q92841 729 aaKnown RBP28.79■■■□□ 2.2
SCARF1-204ENST00000570902 VGFO15240 615 aaPredicted RBP28.78■■■□□ 2.2
SCARF1-204ENST00000570902 C1orf167Q5SNV9 1468 aa28.78■■■□□ 2.2
SCARF1-204ENST00000570902 NAIPQ13075 1403 aa28.76■■■□□ 2.19
SCARF1-204ENST00000570902 RBM6P78332 1123 aaKnown RBP28.75■■■□□ 2.19
SCARF1-204ENST00000570902 QTRT2Q9H974 415 aaKnown RBP28.75■■■□□ 2.19
SCARF1-204ENST00000570902 RRBP1Q9P2E9 1410 aaKnown RBP28.74■■■□□ 2.19
SCARF1-204ENST00000570902 LAMC1P11047 1609 aa28.73■■■□□ 2.19
SCARF1-204ENST00000570902 RPGRIP1LQ68CZ1 1315 aa28.71■■■□□ 2.19
SCARF1-204ENST00000570902 RGS12O14924 1447 aa28.71■■■□□ 2.19
SCARF1-204ENST00000570902 PRAG1Q86YV5 1406 aa28.71■■■□□ 2.19
SCARF1-204ENST00000570902 ROBO2Q9HCK4 1378 aa28.71■■■□□ 2.19
SCARF1-204ENST00000570902 NGLY1Q96IV0 654 aa28.7■■■□□ 2.18
SCARF1-204ENST00000570902 SOS2Q07890 1332 aaPredicted RBP28.69■■■□□ 2.18
SCARF1-204ENST00000570902 ADAMTS2O95450 1211 aa28.68■■■□□ 2.18
SCARF1-204ENST00000570902 HFM1A2PYH4 1435 aa28.67■■■□□ 2.18
SCARF1-204ENST00000570902 ORAI2Q96SN7 254 aa28.66■■■□□ 2.18
SCARF1-204ENST00000570902 SLC4A1APQ9BWU0 796 aaKnown RBP28.63■■■□□ 2.17
SCARF1-204ENST00000570902 PPLO60437 1756 aa28.61■■■□□ 2.17
SCARF1-204ENST00000570902 USP21Q9UK80 565 aa28.61■■■□□ 2.17
SCARF1-204ENST00000570902 TRPC5Q9UL62 973 aaPredicted RBP28.59■■■□□ 2.17
SCARF1-204ENST00000570902 COL22A1Q8NFW1 1626 aaPredicted RBP28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms