RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 E9PCH4 1651 aa18.83■□□□□ 0.61
CAPN3-220ENST00000569827 SETD1AO15047 1707 aaKnown RBP18.83■□□□□ 0.6
CAPN3-220ENST00000569827 TMEM131LA2VDJ0 1609 aa18.82■□□□□ 0.6
CAPN3-220ENST00000569827 PROSER2Q86WR7 435 aaPredicted RBP18.82■□□□□ 0.6
CAPN3-220ENST00000569827 BCANQ96GW7 911 aa18.82■□□□□ 0.6
CAPN3-220ENST00000569827 KCNA6P17658 529 aa18.81■□□□□ 0.6
CAPN3-220ENST00000569827 UNC13BO14795 1591 aa18.81■□□□□ 0.6
CAPN3-220ENST00000569827 FAM135BQ49AJ0 1406 aa18.8■□□□□ 0.6
CAPN3-220ENST00000569827 ANKRD50Q9ULJ7 1429 aa18.8■□□□□ 0.6
CAPN3-220ENST00000569827 NKTRP30414 1462 aaKnown RBP18.79■□□□□ 0.6
CAPN3-220ENST00000569827 ZFYVE9O95405 1425 aa18.78■□□□□ 0.6
CAPN3-220ENST00000569827 RPRD2Q5VT52 1461 aaKnown RBP18.77■□□□□ 0.59
CAPN3-220ENST00000569827 RIMS2Q9UQ26 1411 aa18.76■□□□□ 0.59
CAPN3-220ENST00000569827 NUTM2DQ5VT03 806 aaPredicted RBP18.76■□□□□ 0.59
CAPN3-220ENST00000569827 CHGAP10645 457 aaKnown RBP18.74■□□□□ 0.59
CAPN3-220ENST00000569827 POTEAQ6S8J7 498 aa18.74■□□□□ 0.59
CAPN3-220ENST00000569827 SLC52A1Q9NWF4 448 aa18.74■□□□□ 0.59
CAPN3-220ENST00000569827 IQGAP3Q86VI3 1631 aa18.74■□□□□ 0.59
CAPN3-220ENST00000569827 MSH6P52701 1360 aa18.73■□□□□ 0.59
CAPN3-220ENST00000569827 PPP1R15AO75807 674 aaPredicted RBP18.73■□□□□ 0.59
CAPN3-220ENST00000569827 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.73■□□□□ 0.59
CAPN3-220ENST00000569827 PLEKHG1Q9ULL1 1385 aa18.72■□□□□ 0.59
CAPN3-220ENST00000569827 COL16A1Q07092 1604 aaPredicted RBP18.72■□□□□ 0.59
CAPN3-220ENST00000569827 SPHKAPQ2M3C7 1700 aa18.68■□□□□ 0.58
CAPN3-220ENST00000569827 ADAMTS13Q76LX8 1427 aa18.67■□□□□ 0.58
CAPN3-220ENST00000569827 ITGAEP38570 1179 aa18.67■□□□□ 0.58
CAPN3-220ENST00000569827 SLAIN2Q9P270 581 aa18.67■□□□□ 0.58
CAPN3-220ENST00000569827 PPARGC1BQ86YN6 1023 aaKnown RBP18.66■□□□□ 0.58
CAPN3-220ENST00000569827 DIP2AQ14689 1571 aa18.65■□□□□ 0.58
CAPN3-220ENST00000569827 NRXN3Q9Y4C0 1643 aa18.65■□□□□ 0.58
CAPN3-220ENST00000569827 C14orf37Q86TY3 774 aa18.65■□□□□ 0.58
CAPN3-220ENST00000569827 LRP6O75581 1613 aa18.64■□□□□ 0.57
CAPN3-220ENST00000569827 JCADQ9P266 1359 aa18.62■□□□□ 0.57
CAPN3-220ENST00000569827 PTPRUQ92729 1446 aa18.62■□□□□ 0.57
CAPN3-220ENST00000569827 TRPM2O94759 1503 aa18.62■□□□□ 0.57
CAPN3-220ENST00000569827 SHPRHQ149N8 1683 aa18.62■□□□□ 0.57
CAPN3-220ENST00000569827 XRN1Q8IZH2 1706 aaKnown RBP18.61■□□□□ 0.57
CAPN3-220ENST00000569827 NUP155O75694 1391 aa18.6■□□□□ 0.57
CAPN3-220ENST00000569827 TBX22Q9Y458 520 aa18.6■□□□□ 0.57
CAPN3-220ENST00000569827 AHDC1Q5TGY3 1603 aaPredicted RBP18.6■□□□□ 0.57
CAPN3-220ENST00000569827 ROCK1Q13464 1354 aa18.59■□□□□ 0.57
CAPN3-220ENST00000569827 HDGFP51858 240 aaKnown RBP18.58■□□□□ 0.56
CAPN3-220ENST00000569827 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.58■□□□□ 0.56
CAPN3-220ENST00000569827 CLTCL1P53675 1640 aa18.57■□□□□ 0.56
CAPN3-220ENST00000569827 NALCNQ8IZF0 1738 aa18.57■□□□□ 0.56
CAPN3-220ENST00000569827 KIF1BO60333 1816 aa18.56■□□□□ 0.56
CAPN3-220ENST00000569827 AMOTL2Q9Y2J4 779 aa18.55■□□□□ 0.56
CAPN3-220ENST00000569827 NHSL1Q5SYE7 1610 aa18.54■□□□□ 0.56
CAPN3-220ENST00000569827 ATF3P18847 181 aa18.54■□□□□ 0.56
CAPN3-220ENST00000569827 SETBP1Q9Y6X0 1596 aa18.54■□□□□ 0.56
CAPN3-220ENST00000569827 MEX3CQ5U5Q3 659 aaKnown RBP18.53■□□□□ 0.56
CAPN3-220ENST00000569827 NCOA3Q9Y6Q9 1424 aa18.53■□□□□ 0.56
CAPN3-220ENST00000569827 C19orf44Q9H6X5 657 aa18.52■□□□□ 0.56
CAPN3-220ENST00000569827 ASXL1Q8IXJ9 1541 aa18.52■□□□□ 0.56
CAPN3-220ENST00000569827 PIK3R4Q99570 1358 aa18.52■□□□□ 0.55
CAPN3-220ENST00000569827 ZNF326Q5BKZ1 582 aaKnown RBP18.51■□□□□ 0.55
CAPN3-220ENST00000569827 CADPS2Q86UW7 1296 aa18.51■□□□□ 0.55
CAPN3-220ENST00000569827 TRIM52Q96A61 297 aa18.51■□□□□ 0.55
CAPN3-220ENST00000569827 NEXMIFQ5QGS0 1516 aa18.5■□□□□ 0.55
CAPN3-220ENST00000569827 NUTM2BA6NNL0 878 aaPredicted RBP18.5■□□□□ 0.55
CAPN3-220ENST00000569827 NUTM2EB1AL46 878 aaPredicted RBP18.5■□□□□ 0.55
CAPN3-220ENST00000569827 BRINP3Q76B58 766 aa18.5■□□□□ 0.55
CAPN3-220ENST00000569827 NUTM2AQ8IVF1 878 aaPredicted RBP18.5■□□□□ 0.55
CAPN3-220ENST00000569827 METP08581 1390 aa18.49■□□□□ 0.55
CAPN3-220ENST00000569827 SPATA31A6Q5VVP1 1343 aa18.49■□□□□ 0.55
CAPN3-220ENST00000569827 DDX17Q92841 729 aaKnown RBP18.48■□□□□ 0.55
CAPN3-220ENST00000569827 MST1RQ04912 1400 aa18.48■□□□□ 0.55
CAPN3-220ENST00000569827 DCCP43146 1447 aa18.44■□□□□ 0.54
CAPN3-220ENST00000569827 ADGRL3Q9HAR2 1447 aa18.42■□□□□ 0.54
CAPN3-220ENST00000569827 ZNF772Q68DY9 489 aaPredicted RBP18.42■□□□□ 0.54
CAPN3-220ENST00000569827 PPLO60437 1756 aa18.42■□□□□ 0.54
CAPN3-220ENST00000569827 AFF2P51816 1311 aa18.4■□□□□ 0.54
CAPN3-220ENST00000569827 SETD5Q9C0A6 1442 aa18.4■□□□□ 0.54
CAPN3-220ENST00000569827 UPF1Q92900 1129 aaKnown RBP eCLIP18.39■□□□□ 0.53
CAPN3-220ENST00000569827 NAIPQ13075 1403 aa18.38■□□□□ 0.53
CAPN3-220ENST00000569827 PNPLA6Q8IY17 1366 aa18.37■□□□□ 0.53
CAPN3-220ENST00000569827 RXRBP28702 533 aa18.36■□□□□ 0.53
CAPN3-220ENST00000569827 C8orf37Q96NL8 207 aa18.36■□□□□ 0.53
CAPN3-220ENST00000569827 RRBP1Q9P2E9 1410 aaKnown RBP18.35■□□□□ 0.53
CAPN3-220ENST00000569827 ROBO2Q9HCK4 1378 aa18.34■□□□□ 0.53
CAPN3-220ENST00000569827 LAMC1P11047 1609 aa18.34■□□□□ 0.53
CAPN3-220ENST00000569827 C1orf167Q5SNV9 1468 aa18.33■□□□□ 0.53
CAPN3-220ENST00000569827 RGS12O14924 1447 aa18.33■□□□□ 0.53
CAPN3-220ENST00000569827 ADAMTS2O95450 1211 aa18.32■□□□□ 0.52
CAPN3-220ENST00000569827 LRRC59Q96AG4 307 aaKnown RBP18.32■□□□□ 0.52
CAPN3-220ENST00000569827 ORAI2Q96SN7 254 aa18.31■□□□□ 0.52
CAPN3-220ENST00000569827 CDK12Q9NYV4 1490 aaPredicted RBP18.31■□□□□ 0.52
CAPN3-220ENST00000569827 PTCH1Q13635 1447 aa18.31■□□□□ 0.52
CAPN3-220ENST00000569827 MARF1Q9Y4F3 1742 aaKnown RBP18.3■□□□□ 0.52
CAPN3-220ENST00000569827 IFT172Q9UG01 1749 aa18.29■□□□□ 0.52
CAPN3-220ENST00000569827 FOXD1Q16676 465 aa18.29■□□□□ 0.52
CAPN3-220ENST00000569827 QTRT2Q9H974 415 aaKnown RBP18.27■□□□□ 0.52
CAPN3-220ENST00000569827 RGPD8O14715 1765 aaPredicted RBP18.27■□□□□ 0.51
CAPN3-220ENST00000569827 EP400Q96L91 3159 aa18.26■□□□□ 0.51
CAPN3-220ENST00000569827 COL22A1Q8NFW1 1626 aaPredicted RBP18.26■□□□□ 0.51
CAPN3-220ENST00000569827 HFM1A2PYH4 1435 aa18.25■□□□□ 0.51
CAPN3-220ENST00000569827 NGLY1Q96IV0 654 aa18.25■□□□□ 0.51
CAPN3-220ENST00000569827 SLC4A1APQ9BWU0 796 aaKnown RBP18.25■□□□□ 0.51
CAPN3-220ENST00000569827 VGFO15240 615 aaPredicted RBP18.24■□□□□ 0.51
CAPN3-220ENST00000569827 CDC42BPGQ6DT37 1551 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms