RNA–Protein interactions for RNA: ENST00000568848.5

USB1-214, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 548 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-214ENST00000568848 NUTM2DQ5VT03 806 aaPredicted RBP23.28■■□□□ 1.32
USB1-214ENST00000568848 APLP2Q06481 763 aa23.27■■□□□ 1.32
USB1-214ENST00000568848 FAM50AQ14320 339 aaKnown RBP23.27■■□□□ 1.32
USB1-214ENST00000568848 GCC2Q8IWJ2 1684 aa23.27■■□□□ 1.32
USB1-214ENST00000568848 PHLPP1O60346 1717 aa23.24■■□□□ 1.31
USB1-214ENST00000568848 ZFYVE9O95405 1425 aa23.23■■□□□ 1.31
USB1-214ENST00000568848 NKTRP30414 1462 aaKnown RBP23.23■■□□□ 1.31
USB1-214ENST00000568848 RIMS2Q9UQ26 1411 aa23.21■■□□□ 1.31
USB1-214ENST00000568848 ADGRL2O95490 1459 aa23.21■■□□□ 1.31
USB1-214ENST00000568848 MSH6P52701 1360 aa23.2■■□□□ 1.3
USB1-214ENST00000568848 CHGAP10645 457 aaKnown RBP23.2■■□□□ 1.3
USB1-214ENST00000568848 CHD2O14647 1828 aaKnown RBP23.19■■□□□ 1.3
USB1-214ENST00000568848 TMEM131LA2VDJ0 1609 aa23.19■■□□□ 1.3
USB1-214ENST00000568848 ANKRD50Q9ULJ7 1429 aa23.18■■□□□ 1.3
USB1-214ENST00000568848 PPP1R15AO75807 674 aaPredicted RBP23.18■■□□□ 1.3
USB1-214ENST00000568848 SLAIN2Q9P270 581 aa23.18■■□□□ 1.3
USB1-214ENST00000568848 PLEKHG1Q9ULL1 1385 aa23.16■■□□□ 1.3
USB1-214ENST00000568848 LRP6O75581 1613 aa23.16■■□□□ 1.3
USB1-214ENST00000568848 COL16A1Q07092 1604 aaPredicted RBP23.16■■□□□ 1.3
USB1-214ENST00000568848 SLC52A1Q9NWF4 448 aa23.16■■□□□ 1.3
USB1-214ENST00000568848 E9PCH4 1651 aa23.13■■□□□ 1.29
USB1-214ENST00000568848 ADAMTS13Q76LX8 1427 aa23.12■■□□□ 1.29
USB1-214ENST00000568848 C14orf37Q86TY3 774 aa23.11■■□□□ 1.29
USB1-214ENST00000568848 JCADQ9P266 1359 aa23.11■■□□□ 1.29
USB1-214ENST00000568848 RPRD2Q5VT52 1461 aaKnown RBP23.11■■□□□ 1.29
USB1-214ENST00000568848 UNC13BO14795 1591 aa23.1■■□□□ 1.29
USB1-214ENST00000568848 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.09■■□□□ 1.29
USB1-214ENST00000568848 PTPRUQ92729 1446 aa23.07■■□□□ 1.28
USB1-214ENST00000568848 TRIM52Q96A61 297 aa23.06■■□□□ 1.28
USB1-214ENST00000568848 ITGAEP38570 1179 aa23.04■■□□□ 1.28
USB1-214ENST00000568848 TBX22Q9Y458 520 aa23.04■■□□□ 1.28
USB1-214ENST00000568848 PPARGC1BQ86YN6 1023 aaKnown RBP23.03■■□□□ 1.28
USB1-214ENST00000568848 MEX3CQ5U5Q3 659 aaKnown RBP23.02■■□□□ 1.28
USB1-214ENST00000568848 NUTM2BA6NNL0 878 aaPredicted RBP23.01■■□□□ 1.27
USB1-214ENST00000568848 NUTM2EB1AL46 878 aaPredicted RBP23.01■■□□□ 1.27
USB1-214ENST00000568848 NUTM2AQ8IVF1 878 aaPredicted RBP23.01■■□□□ 1.27
USB1-214ENST00000568848 IQGAP3Q86VI3 1631 aa23■■□□□ 1.27
USB1-214ENST00000568848 AMOTL2Q9Y2J4 779 aa23■■□□□ 1.27
USB1-214ENST00000568848 AHDC1Q5TGY3 1603 aaPredicted RBP23■■□□□ 1.27
USB1-214ENST00000568848 NRXN3Q9Y4C0 1643 aa22.98■■□□□ 1.27
USB1-214ENST00000568848 ATF3P18847 181 aa22.98■■□□□ 1.27
USB1-214ENST00000568848 DDX17Q92841 729 aaKnown RBP22.98■■□□□ 1.27
USB1-214ENST00000568848 DIP2AQ14689 1571 aa22.97■■□□□ 1.27
USB1-214ENST00000568848 SHPRHQ149N8 1683 aa22.97■■□□□ 1.27
USB1-214ENST00000568848 BRINP3Q76B58 766 aa22.97■■□□□ 1.27
USB1-214ENST00000568848 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.97■■□□□ 1.27
USB1-214ENST00000568848 NUP155O75694 1391 aa22.96■■□□□ 1.27
USB1-214ENST00000568848 TRPM2O94759 1503 aa22.95■■□□□ 1.26
USB1-214ENST00000568848 HDGFP51858 240 aaKnown RBP22.95■■□□□ 1.26
USB1-214ENST00000568848 C19orf44Q9H6X5 657 aa22.95■■□□□ 1.26
USB1-214ENST00000568848 CADPS2Q86UW7 1296 aa22.94■■□□□ 1.26
USB1-214ENST00000568848 SPATA31A6Q5VVP1 1343 aa22.93■■□□□ 1.26
USB1-214ENST00000568848 UPF1Q92900 1129 aaKnown RBP eCLIP22.93■■□□□ 1.26
USB1-214ENST00000568848 XRN1Q8IZH2 1706 aaKnown RBP22.93■■□□□ 1.26
USB1-214ENST00000568848 ASXL1Q8IXJ9 1541 aa22.92■■□□□ 1.26
USB1-214ENST00000568848 NCOA3Q9Y6Q9 1424 aa22.91■■□□□ 1.26
USB1-214ENST00000568848 METP08581 1390 aa22.91■■□□□ 1.26
USB1-214ENST00000568848 MST1RQ04912 1400 aa22.89■■□□□ 1.25
USB1-214ENST00000568848 ROCK1Q13464 1354 aa22.89■■□□□ 1.25
USB1-214ENST00000568848 PIK3R4Q99570 1358 aa22.89■■□□□ 1.25
USB1-214ENST00000568848 SPHKAPQ2M3C7 1700 aa22.88■■□□□ 1.25
USB1-214ENST00000568848 ZNF326Q5BKZ1 582 aaKnown RBP22.87■■□□□ 1.25
USB1-214ENST00000568848 ZNF772Q68DY9 489 aaPredicted RBP22.87■■□□□ 1.25
USB1-214ENST00000568848 AFF2P51816 1311 aa22.86■■□□□ 1.25
USB1-214ENST00000568848 NHSL1Q5SYE7 1610 aa22.86■■□□□ 1.25
USB1-214ENST00000568848 NALCNQ8IZF0 1738 aa22.85■■□□□ 1.25
USB1-214ENST00000568848 SETBP1Q9Y6X0 1596 aa22.85■■□□□ 1.25
USB1-214ENST00000568848 CLTCL1P53675 1640 aa22.85■■□□□ 1.25
USB1-214ENST00000568848 RXRBP28702 533 aa22.83■■□□□ 1.25
USB1-214ENST00000568848 C8orf37Q96NL8 207 aa22.81■■□□□ 1.24
USB1-214ENST00000568848 NEXMIFQ5QGS0 1516 aa22.8■■□□□ 1.24
USB1-214ENST00000568848 RGS12O14924 1447 aa22.79■■□□□ 1.24
USB1-214ENST00000568848 DCCP43146 1447 aa22.79■■□□□ 1.24
USB1-214ENST00000568848 SETD5Q9C0A6 1442 aa22.79■■□□□ 1.24
USB1-214ENST00000568848 PNPLA6Q8IY17 1366 aa22.78■■□□□ 1.24
USB1-214ENST00000568848 ADGRL3Q9HAR2 1447 aa22.78■■□□□ 1.24
USB1-214ENST00000568848 ADAMTS2O95450 1211 aa22.77■■□□□ 1.24
USB1-214ENST00000568848 ORAI2Q96SN7 254 aa22.73■■□□□ 1.23
USB1-214ENST00000568848 QTRT2Q9H974 415 aaKnown RBP22.72■■□□□ 1.23
USB1-214ENST00000568848 ROBO2Q9HCK4 1378 aa22.72■■□□□ 1.23
USB1-214ENST00000568848 C1orf167Q5SNV9 1468 aa22.72■■□□□ 1.23
USB1-214ENST00000568848 SRCAPQ6ZRS2 3230 aa22.71■■□□□ 1.23
USB1-214ENST00000568848 LRRC59Q96AG4 307 aaKnown RBP22.71■■□□□ 1.23
USB1-214ENST00000568848 CDK12Q9NYV4 1490 aaPredicted RBP22.7■■□□□ 1.22
USB1-214ENST00000568848 KIF1BO60333 1816 aa22.68■■□□□ 1.22
USB1-214ENST00000568848 NGLY1Q96IV0 654 aa22.66■■□□□ 1.22
USB1-214ENST00000568848 RBM6P78332 1123 aaKnown RBP22.65■■□□□ 1.22
USB1-214ENST00000568848 XPCQ01831 940 aaPredicted RBP22.63■■□□□ 1.21
USB1-214ENST00000568848 NAIPQ13075 1403 aa22.63■■□□□ 1.21
USB1-214ENST00000568848 PTCH1Q13635 1447 aa22.61■■□□□ 1.21
USB1-214ENST00000568848 FOXD1Q16676 465 aa22.61■■□□□ 1.21
USB1-214ENST00000568848 USP21Q9UK80 565 aa22.6■■□□□ 1.21
USB1-214ENST00000568848 LAMC1P11047 1609 aa22.6■■□□□ 1.21
USB1-214ENST00000568848 SOS2Q07890 1332 aaPredicted RBP22.59■■□□□ 1.21
USB1-214ENST00000568848 NUTM2FA1L443 756 aa22.59■■□□□ 1.21
USB1-214ENST00000568848 PPLO60437 1756 aa22.57■■□□□ 1.2
USB1-214ENST00000568848 EP400Q96L91 3159 aa22.56■■□□□ 1.2
USB1-214ENST00000568848 RRBP1Q9P2E9 1410 aaKnown RBP22.54■■□□□ 1.2
USB1-214ENST00000568848 ESCO1Q5FWF5 840 aa22.53■■□□□ 1.2
USB1-214ENST00000568848 STK26Q9P289 416 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms