RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 CNGB1Q14028 1251 aaPredicted RBP24.77■■□□□ 1.56
SMPD3-211ENST00000568373 CFAP65Q6ZU64 1925 aaKnown RBP24.77■■□□□ 1.56
SMPD3-211ENST00000568373 ZMYM4Q5VZL5 1548 aa24.76■■□□□ 1.55
SMPD3-211ENST00000568373 NRXN1Q9ULB1 1477 aa24.75■■□□□ 1.55
SMPD3-211ENST00000568373 ZC3H13Q5T200 1668 aaKnown RBP24.74■■□□□ 1.55
SMPD3-211ENST00000568373 ADGRF5Q8IZF2 1346 aa24.73■■□□□ 1.55
SMPD3-211ENST00000568373 RALBP1Q15311 655 aa24.73■■□□□ 1.55
SMPD3-211ENST00000568373 NOS1P29475 1434 aa24.72■■□□□ 1.55
SMPD3-211ENST00000568373 EIF3AQ14152 1382 aaKnown RBP24.72■■□□□ 1.55
SMPD3-211ENST00000568373 SIGLEC1Q9BZZ2 1709 aa24.72■■□□□ 1.55
SMPD3-211ENST00000568373 PER1O15534 1290 aaPredicted RBP24.71■■□□□ 1.55
SMPD3-211ENST00000568373 ARHGAP31Q2M1Z3 1444 aa24.7■■□□□ 1.54
SMPD3-211ENST00000568373 MYBBP1AQ9BQG0 1328 aaKnown RBP24.7■■□□□ 1.54
SMPD3-211ENST00000568373 CFAP70Q5T0N1 1121 aa24.69■■□□□ 1.54
SMPD3-211ENST00000568373 PPLO60437 1756 aa24.69■■□□□ 1.54
SMPD3-211ENST00000568373 ZBED9Q6R2W3 1325 aa24.69■■□□□ 1.54
SMPD3-211ENST00000568373 PIK3C2BO00750 1634 aa24.68■■□□□ 1.54
SMPD3-211ENST00000568373 CHGAP10645 457 aaKnown RBP24.68■■□□□ 1.54
SMPD3-211ENST00000568373 PARD3Q8TEW0 1356 aa24.67■■□□□ 1.54
SMPD3-211ENST00000568373 SYNMO15061 1565 aa24.67■■□□□ 1.54
SMPD3-211ENST00000568373 BRD4O60885 1362 aaPredicted RBP24.67■■□□□ 1.54
SMPD3-211ENST00000568373 TMC1Q8TDI8 760 aa24.66■■□□□ 1.54
SMPD3-211ENST00000568373 CDCA8Q53HL2 280 aa24.65■■□□□ 1.54
SMPD3-211ENST00000568373 PANK3Q9H999 370 aa24.65■■□□□ 1.54
SMPD3-211ENST00000568373 PELP1Q8IZL8 1130 aaKnown RBP24.65■■□□□ 1.54
SMPD3-211ENST00000568373 PNISRQ8TF01 805 aaKnown RBP24.64■■□□□ 1.53
SMPD3-211ENST00000568373 RPGRIP1LQ68CZ1 1315 aa24.64■■□□□ 1.53
SMPD3-211ENST00000568373 NEFLP07196 543 aa24.63■■□□□ 1.53
SMPD3-211ENST00000568373 FKBP8Q14318 412 aa24.63■■□□□ 1.53
SMPD3-211ENST00000568373 SETBP1Q9Y6X0 1596 aa24.63■■□□□ 1.53
SMPD3-211ENST00000568373 PIK3C2GO75747 1445 aa24.62■■□□□ 1.53
SMPD3-211ENST00000568373 REREQ9P2R6 1566 aa24.6■■□□□ 1.53
SMPD3-211ENST00000568373 SLC24A1O60721 1099 aa24.59■■□□□ 1.53
SMPD3-211ENST00000568373 NLRP13Q86W25 1043 aa24.58■■□□□ 1.53
SMPD3-211ENST00000568373 MYO3AQ8NEV4 1616 aa24.58■■□□□ 1.53
SMPD3-211ENST00000568373 LRPPRCP42704 1394 aaKnown RBP24.57■■□□□ 1.52
SMPD3-211ENST00000568373 KDM5AP29375 1690 aaKnown RBP24.56■■□□□ 1.52
SMPD3-211ENST00000568373 C14orf93Q9H972 538 aaKnown RBP24.56■■□□□ 1.52
SMPD3-211ENST00000568373 PREX1Q8TCU6 1659 aa24.56■■□□□ 1.52
SMPD3-211ENST00000568373 AGLP35573 1532 aa24.55■■□□□ 1.52
SMPD3-211ENST00000568373 MYOM1P52179 1685 aa24.55■■□□□ 1.52
SMPD3-211ENST00000568373 SLC52A1Q9NWF4 448 aa24.55■■□□□ 1.52
SMPD3-211ENST00000568373 NEXMIFQ5QGS0 1516 aa24.55■■□□□ 1.52
SMPD3-211ENST00000568373 CC2D1BQ5T0F9 858 aaKnown RBP24.54■■□□□ 1.52
SMPD3-211ENST00000568373 SBNO2Q9Y2G9 1366 aa24.53■■□□□ 1.52
SMPD3-211ENST00000568373 ADGRB1O14514 1584 aa24.53■■□□□ 1.52
SMPD3-211ENST00000568373 ERVK-7P63135 1459 aa24.53■■□□□ 1.52
SMPD3-211ENST00000568373 IDI1Q13907 227 aa24.52■■□□□ 1.52
SMPD3-211ENST00000568373 VGFO15240 615 aaPredicted RBP24.5■■□□□ 1.51
SMPD3-211ENST00000568373 KNSTRNQ9Y448 316 aa24.49■■□□□ 1.51
SMPD3-211ENST00000568373 PPP6R1Q9UPN7 881 aa24.49■■□□□ 1.51
SMPD3-211ENST00000568373 CENPJQ9HC77 1338 aaPredicted RBP24.48■■□□□ 1.51
SMPD3-211ENST00000568373 BCANQ96GW7 911 aa24.47■■□□□ 1.51
SMPD3-211ENST00000568373 TMEM131LA2VDJ0 1609 aa24.47■■□□□ 1.51
SMPD3-211ENST00000568373 ZFYVE9O95405 1425 aa24.47■■□□□ 1.51
SMPD3-211ENST00000568373 MYO5BQ9ULV0 1848 aa24.46■■□□□ 1.51
SMPD3-211ENST00000568373 AMER1Q5JTC6 1135 aaPredicted RBP24.45■■□□□ 1.5
SMPD3-211ENST00000568373 ASXL1Q8IXJ9 1541 aa24.45■■□□□ 1.5
SMPD3-211ENST00000568373 ARHGEF40Q8TER5 1519 aa24.45■■□□□ 1.5
SMPD3-211ENST00000568373 TRAK1Q9UPV9 953 aa24.44■■□□□ 1.5
SMPD3-211ENST00000568373 QRICH2Q9H0J4 1663 aa24.44■■□□□ 1.5
SMPD3-211ENST00000568373 SMG6Q86US8 1419 aaKnown RBP24.43■■□□□ 1.5
SMPD3-211ENST00000568373 TMEM132EQ6IEE7 984 aa24.43■■□□□ 1.5
SMPD3-211ENST00000568373 NPC1L1Q9UHC9 1359 aa24.43■■□□□ 1.5
SMPD3-211ENST00000568373 NUTM2DQ5VT03 806 aaPredicted RBP24.42■■□□□ 1.5
SMPD3-211ENST00000568373 CLTCQ00610 1675 aaKnown RBP24.42■■□□□ 1.5
SMPD3-211ENST00000568373 FBXO31Q5XUX0 539 aaPredicted RBP24.41■■□□□ 1.5
SMPD3-211ENST00000568373 INSRP06213 1382 aa24.39■■□□□ 1.49
SMPD3-211ENST00000568373 ARHGEF28Q8N1W1 1705 aaKnown RBP24.37■■□□□ 1.49
SMPD3-211ENST00000568373 NUDCQ9Y266 331 aa24.36■■□□□ 1.49
SMPD3-211ENST00000568373 SPATA31D1Q6ZQQ2 1576 aa24.35■■□□□ 1.49
SMPD3-211ENST00000568373 PPP2R1AP30153 589 aa24.34■■□□□ 1.49
SMPD3-211ENST00000568373 BLMP54132 1417 aaPredicted RBP24.32■■□□□ 1.48
SMPD3-211ENST00000568373 ERICH6BQ5W0A0 696 aa24.32■■□□□ 1.48
SMPD3-211ENST00000568373 SENP3-EIF4A1A0A087X0R7 540 aa24.31■■□□□ 1.48
SMPD3-211ENST00000568373 IRX6P78412 446 aaPredicted RBP24.31■■□□□ 1.48
SMPD3-211ENST00000568373 MLECQ14165 292 aa24.31■■□□□ 1.48
SMPD3-211ENST00000568373 CARD14Q9BXL6 1004 aa24.31■■□□□ 1.48
SMPD3-211ENST00000568373 STAG3Q9UJ98 1225 aa24.28■■□□□ 1.48
SMPD3-211ENST00000568373 PUS7Q96PZ0 661 aaKnown RBP24.27■■□□□ 1.48
SMPD3-211ENST00000568373 TULP4Q9NRJ4 1543 aa24.26■■□□□ 1.47
SMPD3-211ENST00000568373 EVC2Q86UK5 1308 aa24.26■■□□□ 1.47
SMPD3-211ENST00000568373 A2ML1A8K2U0 1454 aa24.26■■□□□ 1.47
SMPD3-211ENST00000568373 ALKQ9UM73 1620 aa24.23■■□□□ 1.47
SMPD3-211ENST00000568373 SLC12A5Q9H2X9 1139 aa24.23■■□□□ 1.47
SMPD3-211ENST00000568373 PDE3BQ13370 1112 aa24.22■■□□□ 1.47
SMPD3-211ENST00000568373 PTPRMP28827 1452 aa24.22■■□□□ 1.47
SMPD3-211ENST00000568373 RNF123Q5XPI4 1314 aa24.22■■□□□ 1.47
SMPD3-211ENST00000568373 NSD3Q9BZ95 1437 aa24.22■■□□□ 1.47
SMPD3-211ENST00000568373 YTHDC2Q9H6S0 1430 aaKnown RBP24.22■■□□□ 1.47
SMPD3-211ENST00000568373 ESF1Q9H501 851 aaKnown RBP24.22■■□□□ 1.47
SMPD3-211ENST00000568373 ADAMTS8Q9UP79 889 aa24.22■■□□□ 1.47
SMPD3-211ENST00000568373 STK26Q9P289 416 aa24.21■■□□□ 1.47
SMPD3-211ENST00000568373 ZMYM3Q14202 1370 aa24.21■■□□□ 1.47
SMPD3-211ENST00000568373 WDR43Q15061 677 aaKnown RBP eCLIP24.2■■□□□ 1.46
SMPD3-211ENST00000568373 SENP3Q9H4L4 574 aaPredicted RBP24.2■■□□□ 1.46
SMPD3-211ENST00000568373 USP32Q8NFA0 1604 aa24.19■■□□□ 1.46
SMPD3-211ENST00000568373 SALL2Q9Y467 1007 aaPredicted RBP24.19■■□□□ 1.46
SMPD3-211ENST00000568373 RIMS2Q9UQ26 1411 aa24.18■■□□□ 1.46
SMPD3-211ENST00000568373 PPP4R2Q9NY27 417 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms