RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 E9PCH4 1651 aa7.32□□□□□ -1.24
CLK3-219ENST00000567805 SCAF11Q99590 1463 aaKnown RBP7.32□□□□□ -1.24
CLK3-219ENST00000567805 PPARGC1BQ86YN6 1023 aaKnown RBP7.32□□□□□ -1.24
CLK3-219ENST00000567805 ZNF219Q9P2Y4 722 aaPredicted RBP7.32□□□□□ -1.24
CLK3-219ENST00000567805 NOS1P29475 1434 aa7.32□□□□□ -1.24
CLK3-219ENST00000567805 RRBP1Q9P2E9 1410 aaKnown RBP7.32□□□□□ -1.24
CLK3-219ENST00000567805 ADGRB3O60242 1522 aa7.32□□□□□ -1.24
CLK3-219ENST00000567805 STRCP1A6NGW2 1772 aa7.31□□□□□ -1.24
CLK3-219ENST00000567805 ITGAEP38570 1179 aa7.3□□□□□ -1.24
CLK3-219ENST00000567805 IDI1Q13907 227 aa7.3□□□□□ -1.24
CLK3-219ENST00000567805 SLC52A1Q9NWF4 448 aa7.3□□□□□ -1.24
CLK3-219ENST00000567805 STAG3Q9UJ98 1225 aa7.3□□□□□ -1.24
CLK3-219ENST00000567805 TMEM2Q9UHN6 1383 aa7.3□□□□□ -1.24
CLK3-219ENST00000567805 LTKP29376 864 aa7.29□□□□□ -1.24
CLK3-219ENST00000567805 TXNDC2Q86VQ3 553 aa7.29□□□□□ -1.24
CLK3-219ENST00000567805 EID1Q9Y6B2 187 aa7.29□□□□□ -1.24
CLK3-219ENST00000567805 TMEM131LA2VDJ0 1609 aa7.29□□□□□ -1.24
CLK3-219ENST00000567805 SPHKAPQ2M3C7 1700 aa7.29□□□□□ -1.24
CLK3-219ENST00000567805 CHRDL2Q6WN34 429 aa7.28□□□□□ -1.24
CLK3-219ENST00000567805 NUP155O75694 1391 aa7.28□□□□□ -1.24
CLK3-219ENST00000567805 XIRP1Q702N8 1843 aaKnown RBP7.27□□□□□ -1.25
CLK3-219ENST00000567805 UBAP1LF5GYI3 381 aa7.27□□□□□ -1.25
CLK3-219ENST00000567805 LRRC7Q96NW7 1537 aa7.27□□□□□ -1.25
CLK3-219ENST00000567805 SLC4A1APQ9BWU0 796 aaKnown RBP7.26□□□□□ -1.25
CLK3-219ENST00000567805 ZFYVE9O95405 1425 aa7.26□□□□□ -1.25
CLK3-219ENST00000567805 NAIPQ13075 1403 aa7.26□□□□□ -1.25
CLK3-219ENST00000567805 CHD2O14647 1828 aaKnown RBP7.25□□□□□ -1.25
CLK3-219ENST00000567805 TOM1O60784 492 aa7.25□□□□□ -1.25
CLK3-219ENST00000567805 RBM42Q9BTD8 480 aaKnown RBP7.25□□□□□ -1.25
CLK3-219ENST00000567805 HFM1A2PYH4 1435 aa7.25□□□□□ -1.25
CLK3-219ENST00000567805 NWD1Q149M9 1564 aa7.25□□□□□ -1.25
CLK3-219ENST00000567805 KIF1BO60333 1816 aa7.24□□□□□ -1.25
CLK3-219ENST00000567805 ALKQ9UM73 1620 aa7.24□□□□□ -1.25
CLK3-219ENST00000567805 HDGFP51858 240 aaKnown RBP7.24□□□□□ -1.25
CLK3-219ENST00000567805 RIMS2Q9UQ26 1411 aa7.24□□□□□ -1.25
CLK3-219ENST00000567805 DIP2AQ14689 1571 aa7.24□□□□□ -1.25
CLK3-219ENST00000567805 PLEKHG1Q9ULL1 1385 aa7.23□□□□□ -1.25
CLK3-219ENST00000567805 NKTRP30414 1462 aaKnown RBP7.23□□□□□ -1.25
CLK3-219ENST00000567805 CLTCL1P53675 1640 aa7.23□□□□□ -1.25
CLK3-219ENST00000567805 TRPM2O94759 1503 aa7.22□□□□□ -1.25
CLK3-219ENST00000567805 PPP1R15AO75807 674 aaPredicted RBP7.22□□□□□ -1.25
CLK3-219ENST00000567805 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.22□□□□□ -1.25
CLK3-219ENST00000567805 SLC26A8Q96RN1 970 aa7.22□□□□□ -1.25
CLK3-219ENST00000567805 CHGAP10645 457 aaKnown RBP7.21□□□□□ -1.26
CLK3-219ENST00000567805 KCNA6P17658 529 aa7.21□□□□□ -1.26
CLK3-219ENST00000567805 PIP4K2BP78356 416 aa7.21□□□□□ -1.26
CLK3-219ENST00000567805 BCANQ96GW7 911 aa7.21□□□□□ -1.26
CLK3-219ENST00000567805 SP7Q8TDD2 431 aaPredicted RBP7.2□□□□□ -1.26
CLK3-219ENST00000567805 SETBP1Q9Y6X0 1596 aa7.2□□□□□ -1.26
CLK3-219ENST00000567805 NRXN3Q9Y4C0 1643 aa7.19□□□□□ -1.26
CLK3-219ENST00000567805 ADAMTS13Q76LX8 1427 aa7.19□□□□□ -1.26
CLK3-219ENST00000567805 NEXMIFQ5QGS0 1516 aa7.19□□□□□ -1.26
CLK3-219ENST00000567805 TRIM52Q96A61 297 aa7.19□□□□□ -1.26
CLK3-219ENST00000567805 TBX22Q9Y458 520 aa7.19□□□□□ -1.26
CLK3-219ENST00000567805 TMEM94Q12767 1356 aa7.19□□□□□ -1.26
CLK3-219ENST00000567805 PIK3R4Q99570 1358 aa7.19□□□□□ -1.26
CLK3-219ENST00000567805 DISP3Q9P2K9 1392 aa7.19□□□□□ -1.26
CLK3-219ENST00000567805 PPLO60437 1756 aa7.18□□□□□ -1.26
CLK3-219ENST00000567805 HSPA1LP34931 641 aa7.18□□□□□ -1.26
CLK3-219ENST00000567805 PROSER2Q86WR7 435 aaPredicted RBP7.18□□□□□ -1.26
CLK3-219ENST00000567805 ROBO1Q9Y6N7 1651 aa7.18□□□□□ -1.26
CLK3-219ENST00000567805 XRN1Q8IZH2 1706 aaKnown RBP7.18□□□□□ -1.26
CLK3-219ENST00000567805 ZNF326Q5BKZ1 582 aaKnown RBP7.17□□□□□ -1.26
CLK3-219ENST00000567805 NUTM2DQ5VT03 806 aaPredicted RBP7.17□□□□□ -1.26
CLK3-219ENST00000567805 ACIN1Q9UKV3 1341 aaKnown RBP7.17□□□□□ -1.26
CLK3-219ENST00000567805 MSH6P52701 1360 aa7.17□□□□□ -1.26
CLK3-219ENST00000567805 NCOA3Q9Y6Q9 1424 aa7.17□□□□□ -1.26
CLK3-219ENST00000567805 MED1Q15648 1581 aaPredicted RBP7.16□□□□□ -1.26
CLK3-219ENST00000567805 SETD1AO15047 1707 aaKnown RBP7.16□□□□□ -1.26
CLK3-219ENST00000567805 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.16□□□□□ -1.26
CLK3-219ENST00000567805 FAM135BQ49AJ0 1406 aa7.16□□□□□ -1.26
CLK3-219ENST00000567805 IFT172Q9UG01 1749 aa7.15□□□□□ -1.26
CLK3-219ENST00000567805 SAMD1Q6SPF0 538 aaPredicted RBP7.15□□□□□ -1.26
CLK3-219ENST00000567805 RBM33Q96EV2 1170 aaKnown RBP7.15□□□□□ -1.26
CLK3-219ENST00000567805 PHLPP1O60346 1717 aa7.14□□□□□ -1.27
CLK3-219ENST00000567805 RPGRIP1LQ68CZ1 1315 aa7.14□□□□□ -1.27
CLK3-219ENST00000567805 PTPRUQ92729 1446 aa7.14□□□□□ -1.27
CLK3-219ENST00000567805 SETD5Q9C0A6 1442 aa7.14□□□□□ -1.27
CLK3-219ENST00000567805 CCDC144AA2RUR9 1427 aa7.13□□□□□ -1.27
CLK3-219ENST00000567805 VGFO15240 615 aaPredicted RBP7.13□□□□□ -1.27
CLK3-219ENST00000567805 POLA2Q14181 598 aa7.13□□□□□ -1.27
CLK3-219ENST00000567805 MPHOSPH9Q99550 1183 aa7.13□□□□□ -1.27
CLK3-219ENST00000567805 AMOTL2Q9Y2J4 779 aa7.13□□□□□ -1.27
CLK3-219ENST00000567805 NALCNQ8IZF0 1738 aa7.13□□□□□ -1.27
CLK3-219ENST00000567805 DCCP43146 1447 aa7.12□□□□□ -1.27
CLK3-219ENST00000567805 METP08581 1390 aa7.12□□□□□ -1.27
CLK3-219ENST00000567805 C14orf37Q86TY3 774 aa7.12□□□□□ -1.27
CLK3-219ENST00000567805 CADPS2Q86UW7 1296 aa7.12□□□□□ -1.27
CLK3-219ENST00000567805 C19orf44Q9H6X5 657 aa7.12□□□□□ -1.27
CLK3-219ENST00000567805 SLAIN2Q9P270 581 aa7.12□□□□□ -1.27
CLK3-219ENST00000567805 SPATA31E1Q6ZUB1 1445 aa7.11□□□□□ -1.27
CLK3-219ENST00000567805 RAB3GAP2Q9H2M9 1393 aa7.11□□□□□ -1.27
CLK3-219ENST00000567805 ATF3P18847 181 aa7.11□□□□□ -1.27
CLK3-219ENST00000567805 ILDR2Q71H61 639 aa7.11□□□□□ -1.27
CLK3-219ENST00000567805 COL16A1Q07092 1604 aaPredicted RBP7.11□□□□□ -1.27
CLK3-219ENST00000567805 PTCH1Q13635 1447 aa7.1□□□□□ -1.27
CLK3-219ENST00000567805 PRAG1Q86YV5 1406 aa7.1□□□□□ -1.27
CLK3-219ENST00000567805 AHDC1Q5TGY3 1603 aaPredicted RBP7.1□□□□□ -1.27
CLK3-219ENST00000567805 KNDC1Q76NI1 1749 aa7.1□□□□□ -1.27
CLK3-219ENST00000567805 ADGRL3Q9HAR2 1447 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms