RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 EID1Q9Y6B2 187 aa17.84■□□□□ 0.45
SF3B3-208ENST00000567250 ZFYVE9O95405 1425 aa17.83■□□□□ 0.45
SF3B3-208ENST00000567250 RIMS2Q9UQ26 1411 aa17.83■□□□□ 0.45
SF3B3-208ENST00000567250 ANKRD30BQ9BXX2 1392 aa17.83■□□□□ 0.45
SF3B3-208ENST00000567250 NEXMIFQ5QGS0 1516 aa17.82■□□□□ 0.44
SF3B3-208ENST00000567250 HDGFP51858 240 aaKnown RBP17.82■□□□□ 0.44
SF3B3-208ENST00000567250 NPHP4O75161 1426 aaPredicted RBP17.81■□□□□ 0.44
SF3B3-208ENST00000567250 DHX57Q6P158 1386 aaKnown RBP17.8■□□□□ 0.44
SF3B3-208ENST00000567250 ZNF326Q5BKZ1 582 aaKnown RBP17.8■□□□□ 0.44
SF3B3-208ENST00000567250 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.8■□□□□ 0.44
SF3B3-208ENST00000567250 DIP2AQ14689 1571 aa17.79■□□□□ 0.44
SF3B3-208ENST00000567250 NCKAP5LQ9HCH0 1330 aa17.79■□□□□ 0.44
SF3B3-208ENST00000567250 SPATA31E1Q6ZUB1 1445 aa17.79■□□□□ 0.44
SF3B3-208ENST00000567250 PPP1R15AO75807 674 aaPredicted RBP17.78■□□□□ 0.44
SF3B3-208ENST00000567250 TXNDC2Q86VQ3 553 aa17.78■□□□□ 0.44
SF3B3-208ENST00000567250 PIAS4Q8N2W9 510 aaPredicted RBP17.78■□□□□ 0.44
SF3B3-208ENST00000567250 PLEKHG1Q9ULL1 1385 aa17.77■□□□□ 0.43
SF3B3-208ENST00000567250 RPGRIP1LQ68CZ1 1315 aa17.76■□□□□ 0.43
SF3B3-208ENST00000567250 LTKP29376 864 aa17.75■□□□□ 0.43
SF3B3-208ENST00000567250 SETBP1Q9Y6X0 1596 aa17.74■□□□□ 0.43
SF3B3-208ENST00000567250 LAMC1P11047 1609 aa17.72■□□□□ 0.43
SF3B3-208ENST00000567250 NRXN3Q9Y4C0 1643 aa17.72■□□□□ 0.43
SF3B3-208ENST00000567250 MYOM2P54296 1465 aa17.72■□□□□ 0.43
SF3B3-208ENST00000567250 VGFO15240 615 aaPredicted RBP17.7■□□□□ 0.42
SF3B3-208ENST00000567250 RGL3Q3MIN7 710 aa17.69■□□□□ 0.42
SF3B3-208ENST00000567250 BCANQ96GW7 911 aa17.69■□□□□ 0.42
SF3B3-208ENST00000567250 SETD1AO15047 1707 aaKnown RBP17.68■□□□□ 0.42
SF3B3-208ENST00000567250 CPS1P31327 1500 aa17.67■□□□□ 0.42
SF3B3-208ENST00000567250 NWD1Q149M9 1564 aa17.67■□□□□ 0.42
SF3B3-208ENST00000567250 NUTM2DQ5VT03 806 aaPredicted RBP17.67■□□□□ 0.42
SF3B3-208ENST00000567250 CHD2O14647 1828 aaKnown RBP17.66■□□□□ 0.42
SF3B3-208ENST00000567250 ADAMTS13Q76LX8 1427 aa17.65■□□□□ 0.42
SF3B3-208ENST00000567250 CLSPNQ9HAW4 1339 aa17.65■□□□□ 0.42
SF3B3-208ENST00000567250 PIK3C2GO75747 1445 aa17.64■□□□□ 0.42
SF3B3-208ENST00000567250 NRXN1Q9ULB1 1477 aa17.64■□□□□ 0.41
SF3B3-208ENST00000567250 STAC3Q96MF2 364 aa17.64■□□□□ 0.41
SF3B3-208ENST00000567250 LTBP4Q8N2S1 1624 aa17.64■□□□□ 0.41
SF3B3-208ENST00000567250 PIK3R4Q99570 1358 aa17.64■□□□□ 0.41
SF3B3-208ENST00000567250 STRCP1A6NGW2 1772 aa17.63■□□□□ 0.41
SF3B3-208ENST00000567250 NKTRP30414 1462 aaKnown RBP17.63■□□□□ 0.41
SF3B3-208ENST00000567250 ALKQ9UM73 1620 aa17.63■□□□□ 0.41
SF3B3-208ENST00000567250 XRN1Q8IZH2 1706 aaKnown RBP17.61■□□□□ 0.41
SF3B3-208ENST00000567250 SLC26A8Q96RN1 970 aa17.61■□□□□ 0.41
SF3B3-208ENST00000567250 TBX22Q9Y458 520 aa17.61■□□□□ 0.41
SF3B3-208ENST00000567250 ZNF335Q9H4Z2 1342 aaPredicted RBP17.61■□□□□ 0.41
SF3B3-208ENST00000567250 KIAA1210Q9ULL0 1709 aa17.61■□□□□ 0.41
SF3B3-208ENST00000567250 KNDC1Q76NI1 1749 aa17.59■□□□□ 0.41
SF3B3-208ENST00000567250 IQSEC2Q5JU85 1478 aa17.59■□□□□ 0.41
SF3B3-208ENST00000567250 TONSLQ96HA7 1378 aa17.59■□□□□ 0.41
SF3B3-208ENST00000567250 DCAF11Q8TEB1 546 aa17.59■□□□□ 0.41
SF3B3-208ENST00000567250 ADGRF5Q8IZF2 1346 aa17.58■□□□□ 0.4
SF3B3-208ENST00000567250 NEUROD1Q13562 356 aa17.58■□□□□ 0.4
SF3B3-208ENST00000567250 SIN3AQ96ST3 1273 aa17.58■□□□□ 0.4
SF3B3-208ENST00000567250 CCER1Q8TC90 406 aaPredicted RBP17.56■□□□□ 0.4
SF3B3-208ENST00000567250 KCNA6P17658 529 aa17.55■□□□□ 0.4
SF3B3-208ENST00000567250 ASXL1Q8IXJ9 1541 aa17.54■□□□□ 0.4
SF3B3-208ENST00000567250 KDM2AQ9Y2K7 1162 aa17.54■□□□□ 0.4
SF3B3-208ENST00000567250 PRAG1Q86YV5 1406 aa17.54■□□□□ 0.4
SF3B3-208ENST00000567250 XIRP1Q702N8 1843 aaKnown RBP17.54■□□□□ 0.4
SF3B3-208ENST00000567250 METP08581 1390 aa17.53■□□□□ 0.4
SF3B3-208ENST00000567250 LRRC7Q96NW7 1537 aa17.52■□□□□ 0.4
SF3B3-208ENST00000567250 TRPM1Q7Z4N2 1603 aa17.52■□□□□ 0.4
SF3B3-208ENST00000567250 PTCH1Q13635 1447 aa17.52■□□□□ 0.4
SF3B3-208ENST00000567250 ADGRB1O14514 1584 aa17.5■□□□□ 0.39
SF3B3-208ENST00000567250 PTPRUQ92729 1446 aa17.5■□□□□ 0.39
SF3B3-208ENST00000567250 L3MBTL2Q969R5 705 aa17.5■□□□□ 0.39
SF3B3-208ENST00000567250 CERKQ8TCT0 537 aa17.49■□□□□ 0.39
SF3B3-208ENST00000567250 C14orf93Q9H972 538 aaKnown RBP17.49■□□□□ 0.39
SF3B3-208ENST00000567250 TECPR2O15040 1411 aa17.48■□□□□ 0.39
SF3B3-208ENST00000567250 AMOTL2Q9Y2J4 779 aa17.48■□□□□ 0.39
SF3B3-208ENST00000567250 YTHDC2Q9H6S0 1430 aaKnown RBP17.47■□□□□ 0.39
SF3B3-208ENST00000567250 NCOA3Q9Y6Q9 1424 aa17.47■□□□□ 0.39
SF3B3-208ENST00000567250 TIMELESSQ9UNS1 1208 aa17.47■□□□□ 0.39
SF3B3-208ENST00000567250 LRPPRCP42704 1394 aaKnown RBP17.47■□□□□ 0.39
SF3B3-208ENST00000567250 DLC1Q96QB1 1528 aa17.47■□□□□ 0.39
SF3B3-208ENST00000567250 CFAP70Q5T0N1 1121 aa17.46■□□□□ 0.39
SF3B3-208ENST00000567250 NALCNQ8IZF0 1738 aa17.46■□□□□ 0.39
SF3B3-208ENST00000567250 TMEM94Q12767 1356 aa17.45■□□□□ 0.38
SF3B3-208ENST00000567250 ARHGEF28Q8N1W1 1705 aaKnown RBP17.45■□□□□ 0.38
SF3B3-208ENST00000567250 PROSER2Q86WR7 435 aaPredicted RBP17.45■□□□□ 0.38
SF3B3-208ENST00000567250 MSH6P52701 1360 aa17.42■□□□□ 0.38
SF3B3-208ENST00000567250 ABCC11Q96J66 1382 aa17.42■□□□□ 0.38
SF3B3-208ENST00000567250 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.42■□□□□ 0.38
SF3B3-208ENST00000567250 FAM135BQ49AJ0 1406 aa17.42■□□□□ 0.38
SF3B3-208ENST00000567250 RALGAPBQ86X10 1494 aa17.42■□□□□ 0.38
SF3B3-208ENST00000567250 DCCP43146 1447 aa17.41■□□□□ 0.38
SF3B3-208ENST00000567250 ADGRL3Q9HAR2 1447 aa17.4■□□□□ 0.38
SF3B3-208ENST00000567250 TMEM132EQ6IEE7 984 aa17.4■□□□□ 0.38
SF3B3-208ENST00000567250 C14orf37Q86TY3 774 aa17.4■□□□□ 0.38
SF3B3-208ENST00000567250 ROCK2O75116 1388 aaKnown RBP17.4■□□□□ 0.38
SF3B3-208ENST00000567250 ROBO2Q9HCK4 1378 aa17.4■□□□□ 0.38
SF3B3-208ENST00000567250 CDC42BPGQ6DT37 1551 aa17.39■□□□□ 0.37
SF3B3-208ENST00000567250 STK26Q9P289 416 aa17.38■□□□□ 0.37
SF3B3-208ENST00000567250 ADGRB2O60241 1585 aa17.36■□□□□ 0.37
SF3B3-208ENST00000567250 SIRT1Q96EB6 747 aa17.36■□□□□ 0.37
SF3B3-208ENST00000567250 GPRASP1Q5JY77 1395 aa17.36■□□□□ 0.37
SF3B3-208ENST00000567250 QRICH2Q9H0J4 1663 aa17.36■□□□□ 0.37
SF3B3-208ENST00000567250 TOM1O60784 492 aa17.35■□□□□ 0.37
SF3B3-208ENST00000567250 EIF3AQ14152 1382 aaKnown RBP17.35■□□□□ 0.37
SF3B3-208ENST00000567250 UBAP1LF5GYI3 381 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms