RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.71■■□□□ 1.87
CDH3-205ENST00000566808 ABCC5O15440 1437 aa26.71■■□□□ 1.87
CDH3-205ENST00000566808 UPF1Q92900 1129 aaKnown RBP eCLIP26.7■■□□□ 1.86
CDH3-205ENST00000566808 MYO5BQ9ULV0 1848 aa26.69■■□□□ 1.86
CDH3-205ENST00000566808 PTPN23Q9H3S7 1636 aa26.69■■□□□ 1.86
CDH3-205ENST00000566808 ZNF772Q68DY9 489 aaPredicted RBP26.69■■□□□ 1.86
CDH3-205ENST00000566808 RRP7BPQ9NSQ0 103 aa26.68■■□□□ 1.86
CDH3-205ENST00000566808 ZFYVE9O95405 1425 aa26.66■■□□□ 1.86
CDH3-205ENST00000566808 NCOA3Q9Y6Q9 1424 aa26.66■■□□□ 1.86
CDH3-205ENST00000566808 PLEKHG1Q9ULL1 1385 aa26.66■■□□□ 1.86
CDH3-205ENST00000566808 GCC2Q8IWJ2 1684 aa26.66■■□□□ 1.86
CDH3-205ENST00000566808 DAPK1P53355 1430 aa26.65■■□□□ 1.86
CDH3-205ENST00000566808 MEX3CQ5U5Q3 659 aaKnown RBP26.65■■□□□ 1.86
CDH3-205ENST00000566808 CDK12Q9NYV4 1490 aaPredicted RBP26.64■■□□□ 1.86
CDH3-205ENST00000566808 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.63■■□□□ 1.85
CDH3-205ENST00000566808 BCANQ96GW7 911 aa26.63■■□□□ 1.85
CDH3-205ENST00000566808 RPRD2Q5VT52 1461 aaKnown RBP26.62■■□□□ 1.85
CDH3-205ENST00000566808 KANK4Q5T7N3 995 aaPredicted RBP26.62■■□□□ 1.85
CDH3-205ENST00000566808 TRIM52Q96A61 297 aa26.62■■□□□ 1.85
CDH3-205ENST00000566808 SLC52A1Q9NWF4 448 aa26.62■■□□□ 1.85
CDH3-205ENST00000566808 SRCAPQ6ZRS2 3230 aa26.62■■□□□ 1.85
CDH3-205ENST00000566808 DIP2AQ14689 1571 aa26.6■■□□□ 1.85
CDH3-205ENST00000566808 ANKRD30AQ9BXX3 1397 aa26.58■■□□□ 1.85
CDH3-205ENST00000566808 TMEM131LA2VDJ0 1609 aa26.58■■□□□ 1.85
CDH3-205ENST00000566808 RIMS2Q9UQ26 1411 aa26.57■■□□□ 1.84
CDH3-205ENST00000566808 PPP1R15AO75807 674 aaPredicted RBP26.54■■□□□ 1.84
CDH3-205ENST00000566808 RXRBP28702 533 aa26.54■■□□□ 1.84
CDH3-205ENST00000566808 CADPS2Q86UW7 1296 aa26.54■■□□□ 1.84
CDH3-205ENST00000566808 C14orf37Q86TY3 774 aa26.53■■□□□ 1.84
CDH3-205ENST00000566808 PIK3R4Q99570 1358 aa26.5■■□□□ 1.83
CDH3-205ENST00000566808 HDGFP51858 240 aaKnown RBP26.5■■□□□ 1.83
CDH3-205ENST00000566808 TBX22Q9Y458 520 aa26.5■■□□□ 1.83
CDH3-205ENST00000566808 ADGRL2O95490 1459 aa26.49■■□□□ 1.83
CDH3-205ENST00000566808 ADAMTS13Q76LX8 1427 aa26.48■■□□□ 1.83
CDH3-205ENST00000566808 NHSL1Q5SYE7 1610 aa26.48■■□□□ 1.83
CDH3-205ENST00000566808 ATF3P18847 181 aa26.48■■□□□ 1.83
CDH3-205ENST00000566808 C19orf44Q9H6X5 657 aa26.48■■□□□ 1.83
CDH3-205ENST00000566808 DCCP43146 1447 aa26.48■■□□□ 1.83
CDH3-205ENST00000566808 TRPM2O94759 1503 aa26.46■■□□□ 1.83
CDH3-205ENST00000566808 ASXL1Q8IXJ9 1541 aa26.46■■□□□ 1.83
CDH3-205ENST00000566808 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.44■■□□□ 1.82
CDH3-205ENST00000566808 AFF2P51816 1311 aa26.43■■□□□ 1.82
CDH3-205ENST00000566808 RGS12O14924 1447 aa26.43■■□□□ 1.82
CDH3-205ENST00000566808 SETD5Q9C0A6 1442 aa26.43■■□□□ 1.82
CDH3-205ENST00000566808 BRINP3Q76B58 766 aa26.43■■□□□ 1.82
CDH3-205ENST00000566808 CHIC2Q9UKJ5 165 aa26.43■■□□□ 1.82
CDH3-205ENST00000566808 XRN1Q8IZH2 1706 aaKnown RBP26.4■■□□□ 1.82
CDH3-205ENST00000566808 NUTM2BA6NNL0 878 aaPredicted RBP26.4■■□□□ 1.82
CDH3-205ENST00000566808 NUTM2EB1AL46 878 aaPredicted RBP26.4■■□□□ 1.82
CDH3-205ENST00000566808 NUTM2AQ8IVF1 878 aaPredicted RBP26.4■■□□□ 1.82
CDH3-205ENST00000566808 UNC13BO14795 1591 aa26.4■■□□□ 1.82
CDH3-205ENST00000566808 ANKRD50Q9ULJ7 1429 aa26.39■■□□□ 1.81
CDH3-205ENST00000566808 E9PCH4 1651 aa26.38■■□□□ 1.81
CDH3-205ENST00000566808 MST1RQ04912 1400 aa26.34■■□□□ 1.81
CDH3-205ENST00000566808 PTPRUQ92729 1446 aa26.34■■□□□ 1.81
CDH3-205ENST00000566808 RBM6P78332 1123 aaKnown RBP26.32■■□□□ 1.8
CDH3-205ENST00000566808 NRXN3Q9Y4C0 1643 aa26.32■■□□□ 1.8
CDH3-205ENST00000566808 CHGAP10645 457 aaKnown RBP26.31■■□□□ 1.8
CDH3-205ENST00000566808 SETBP1Q9Y6X0 1596 aa26.3■■□□□ 1.8
CDH3-205ENST00000566808 AMOTL2Q9Y2J4 779 aa26.3■■□□□ 1.8
CDH3-205ENST00000566808 PNPLA6Q8IY17 1366 aa26.3■■□□□ 1.8
CDH3-205ENST00000566808 C8orf37Q96NL8 207 aa26.29■■□□□ 1.8
CDH3-205ENST00000566808 EP400Q96L91 3159 aa26.29■■□□□ 1.8
CDH3-205ENST00000566808 IQGAP3Q86VI3 1631 aa26.28■■□□□ 1.8
CDH3-205ENST00000566808 NUTM2DQ5VT03 806 aaPredicted RBP26.28■■□□□ 1.8
CDH3-205ENST00000566808 LRRC59Q96AG4 307 aaKnown RBP26.28■■□□□ 1.8
CDH3-205ENST00000566808 ATAD2Q6PL18 1390 aa26.28■■□□□ 1.8
CDH3-205ENST00000566808 NALCNQ8IZF0 1738 aa26.27■■□□□ 1.8
CDH3-205ENST00000566808 APLP2Q06481 763 aa26.26■■□□□ 1.79
CDH3-205ENST00000566808 QTRT2Q9H974 415 aaKnown RBP26.26■■□□□ 1.79
CDH3-205ENST00000566808 LAMC1P11047 1609 aa26.25■■□□□ 1.79
CDH3-205ENST00000566808 ADGRL3Q9HAR2 1447 aa26.24■■□□□ 1.79
CDH3-205ENST00000566808 NGLY1Q96IV0 654 aa26.22■■□□□ 1.79
CDH3-205ENST00000566808 FOXD1Q16676 465 aa26.19■■□□□ 1.78
CDH3-205ENST00000566808 SPHKAPQ2M3C7 1700 aa26.16■■□□□ 1.78
CDH3-205ENST00000566808 LOC105371045A0A1W2PR82 267 aa26.14■■□□□ 1.78
CDH3-205ENST00000566808 DDX17Q92841 729 aaKnown RBP26.14■■□□□ 1.78
CDH3-205ENST00000566808 FAM50AQ14320 339 aaKnown RBP26.13■■□□□ 1.77
CDH3-205ENST00000566808 ZRANB1Q9UGI0 708 aa26.13■■□□□ 1.77
CDH3-205ENST00000566808 COL22A1Q8NFW1 1626 aaPredicted RBP26.13■■□□□ 1.77
CDH3-205ENST00000566808 PTCH1Q13635 1447 aa26.13■■□□□ 1.77
CDH3-205ENST00000566808 METP08581 1390 aa26.12■■□□□ 1.77
CDH3-205ENST00000566808 ADAMTS2O95450 1211 aa26.12■■□□□ 1.77
CDH3-205ENST00000566808 C1orf167Q5SNV9 1468 aa26.11■■□□□ 1.77
CDH3-205ENST00000566808 TRPC5Q9UL62 973 aaPredicted RBP26.1■■□□□ 1.77
CDH3-205ENST00000566808 ATRNO75882 1429 aa26.09■■□□□ 1.77
CDH3-205ENST00000566808 USP21Q9UK80 565 aa26.09■■□□□ 1.77
CDH3-205ENST00000566808 MARF1Q9Y4F3 1742 aaKnown RBP26.08■■□□□ 1.76
CDH3-205ENST00000566808 ROCK1Q13464 1354 aa26.07■■□□□ 1.76
CDH3-205ENST00000566808 NEXMIFQ5QGS0 1516 aa26.05■■□□□ 1.76
CDH3-205ENST00000566808 SOS2Q07890 1332 aaPredicted RBP26.05■■□□□ 1.76
CDH3-205ENST00000566808 FNBP4Q8N3X1 1017 aaPredicted RBP26.04■■□□□ 1.76
CDH3-205ENST00000566808 CCDC125Q86Z20 511 aa26.03■■□□□ 1.76
CDH3-205ENST00000566808 NUP155O75694 1391 aa26.03■■□□□ 1.76
CDH3-205ENST00000566808 MYOM2P54296 1465 aa26.01■■□□□ 1.75
CDH3-205ENST00000566808 TNKS1BP1Q9C0C2 1729 aaKnown RBP26■■□□□ 1.75
CDH3-205ENST00000566808 ZNF326Q5BKZ1 582 aaKnown RBP25.99■■□□□ 1.75
CDH3-205ENST00000566808 CLTCL1P53675 1640 aa25.99■■□□□ 1.75
CDH3-205ENST00000566808 PRAG1Q86YV5 1406 aa25.98■■□□□ 1.75
CDH3-205ENST00000566808 KIF1BO60333 1816 aa25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms