RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 COL17A1Q9UMD9 1497 aaPredicted RBP22.69■■□□□ 1.22
CMTM3-213ENST00000566756 ARHGAP31Q2M1Z3 1444 aa22.69■■□□□ 1.22
CMTM3-213ENST00000566756 BRD4O60885 1362 aaPredicted RBP22.68■■□□□ 1.22
CMTM3-213ENST00000566756 RALBP1Q15311 655 aa22.67■■□□□ 1.22
CMTM3-213ENST00000566756 PNISRQ8TF01 805 aaKnown RBP22.67■■□□□ 1.22
CMTM3-213ENST00000566756 NUDCQ9Y266 331 aa22.67■■□□□ 1.22
CMTM3-213ENST00000566756 GPRASP1Q5JY77 1395 aa22.66■■□□□ 1.22
CMTM3-213ENST00000566756 LRPPRCP42704 1394 aaKnown RBP22.66■■□□□ 1.22
CMTM3-213ENST00000566756 CFAP65Q6ZU64 1925 aaKnown RBP22.65■■□□□ 1.22
CMTM3-213ENST00000566756 ARHGEF40Q8TER5 1519 aa22.65■■□□□ 1.22
CMTM3-213ENST00000566756 ST20-MTHFSA0A0A6YYL1 179 aa22.64■■□□□ 1.21
CMTM3-213ENST00000566756 PPP6R1Q9UPN7 881 aa22.63■■□□□ 1.21
CMTM3-213ENST00000566756 NOS1P29475 1434 aa22.63■■□□□ 1.21
CMTM3-213ENST00000566756 MYBBP1AQ9BQG0 1328 aaKnown RBP22.63■■□□□ 1.21
CMTM3-213ENST00000566756 SIGLEC1Q9BZZ2 1709 aa22.63■■□□□ 1.21
CMTM3-213ENST00000566756 MADDQ8WXG6 1647 aa22.63■■□□□ 1.21
CMTM3-213ENST00000566756 UGGT1Q9NYU2 1555 aa22.62■■□□□ 1.21
CMTM3-213ENST00000566756 IFT172Q9UG01 1749 aa22.62■■□□□ 1.21
CMTM3-213ENST00000566756 TMC1Q8TDI8 760 aa22.61■■□□□ 1.21
CMTM3-213ENST00000566756 POLR3GLQ9BT43 218 aa22.61■■□□□ 1.21
CMTM3-213ENST00000566756 PIK3C2BO00750 1634 aa22.6■■□□□ 1.21
CMTM3-213ENST00000566756 ADGRB3O60242 1522 aa22.59■■□□□ 1.21
CMTM3-213ENST00000566756 MROH2AA6NES4 1674 aa22.58■■□□□ 1.21
CMTM3-213ENST00000566756 KIAA1210Q9ULL0 1709 aa22.58■■□□□ 1.21
CMTM3-213ENST00000566756 MYOM2P54296 1465 aa22.58■■□□□ 1.2
CMTM3-213ENST00000566756 INSRP06213 1382 aa22.56■■□□□ 1.2
CMTM3-213ENST00000566756 SYNMO15061 1565 aa22.56■■□□□ 1.2
CMTM3-213ENST00000566756 PARD3Q8TEW0 1356 aa22.55■■□□□ 1.2
CMTM3-213ENST00000566756 PREX1Q8TCU6 1659 aa22.55■■□□□ 1.2
CMTM3-213ENST00000566756 NBPF1Q3BBV0 1214 aa22.53■■□□□ 1.2
CMTM3-213ENST00000566756 B4GALNT3Q6L9W6 998 aa22.52■■□□□ 1.2
CMTM3-213ENST00000566756 PPLO60437 1756 aa22.51■■□□□ 1.19
CMTM3-213ENST00000566756 NRXN1Q9ULB1 1477 aa22.51■■□□□ 1.19
CMTM3-213ENST00000566756 NLRP13Q86W25 1043 aa22.5■■□□□ 1.19
CMTM3-213ENST00000566756 RPGRIP1LQ68CZ1 1315 aa22.49■■□□□ 1.19
CMTM3-213ENST00000566756 MSH5O43196 834 aa22.49■■□□□ 1.19
CMTM3-213ENST00000566756 IQGAP1P46940 1657 aa22.49■■□□□ 1.19
CMTM3-213ENST00000566756 CLTCQ00610 1675 aaKnown RBP22.49■■□□□ 1.19
CMTM3-213ENST00000566756 SLC52A1Q9NWF4 448 aa22.49■■□□□ 1.19
CMTM3-213ENST00000566756 PER1O15534 1290 aaPredicted RBP22.47■■□□□ 1.19
CMTM3-213ENST00000566756 PDE3BQ13370 1112 aa22.46■■□□□ 1.19
CMTM3-213ENST00000566756 TESK2Q96S53 571 aa22.44■■□□□ 1.18
CMTM3-213ENST00000566756 ERVK-7P63135 1459 aa22.44■■□□□ 1.18
CMTM3-213ENST00000566756 DNAJC5Q9H3Z4 198 aa22.42■■□□□ 1.18
CMTM3-213ENST00000566756 SCAF11Q99590 1463 aaKnown RBP22.42■■□□□ 1.18
CMTM3-213ENST00000566756 SPATA31D1Q6ZQQ2 1576 aa22.41■■□□□ 1.18
CMTM3-213ENST00000566756 IDI1Q13907 227 aa22.41■■□□□ 1.18
CMTM3-213ENST00000566756 ADGRF5Q8IZF2 1346 aa22.41■■□□□ 1.18
CMTM3-213ENST00000566756 CHGAP10645 457 aaKnown RBP22.41■■□□□ 1.18
CMTM3-213ENST00000566756 TMEM131LA2VDJ0 1609 aa22.4■■□□□ 1.18
CMTM3-213ENST00000566756 CNGB1Q14028 1251 aaPredicted RBP22.4■■□□□ 1.18
CMTM3-213ENST00000566756 NEXMIFQ5QGS0 1516 aa22.39■■□□□ 1.18
CMTM3-213ENST00000566756 SETBP1Q9Y6X0 1596 aa22.39■■□□□ 1.18
CMTM3-213ENST00000566756 CCDC136Q96JN2 1154 aa22.39■■□□□ 1.17
CMTM3-213ENST00000566756 MYO5BQ9ULV0 1848 aa22.38■■□□□ 1.17
CMTM3-213ENST00000566756 PIK3C2GO75747 1445 aa22.38■■□□□ 1.17
CMTM3-213ENST00000566756 DISP3Q9P2K9 1392 aa22.38■■□□□ 1.17
CMTM3-213ENST00000566756 TMF1P82094 1093 aa22.38■■□□□ 1.17
CMTM3-213ENST00000566756 TRHP20396 242 aaPredicted RBP22.38■■□□□ 1.17
CMTM3-213ENST00000566756 ZFYVE9O95405 1425 aa22.37■■□□□ 1.17
CMTM3-213ENST00000566756 BLMP54132 1417 aaPredicted RBP22.37■■□□□ 1.17
CMTM3-213ENST00000566756 FBXO31Q5XUX0 539 aaPredicted RBP22.36■■□□□ 1.17
CMTM3-213ENST00000566756 CFAP70Q5T0N1 1121 aa22.34■■□□□ 1.17
CMTM3-213ENST00000566756 VGFO15240 615 aaPredicted RBP22.34■■□□□ 1.17
CMTM3-213ENST00000566756 RRP1P56182 461 aaKnown RBP22.34■■□□□ 1.17
CMTM3-213ENST00000566756 MLECQ14165 292 aa22.34■■□□□ 1.17
CMTM3-213ENST00000566756 ERICH6Q7L0X2 663 aa22.34■■□□□ 1.17
CMTM3-213ENST00000566756 EIF3AQ14152 1382 aaKnown RBP22.33■■□□□ 1.17
CMTM3-213ENST00000566756 C14orf93Q9H972 538 aaKnown RBP22.32■■□□□ 1.16
CMTM3-213ENST00000566756 ESF1Q9H501 851 aaKnown RBP22.32■■□□□ 1.16
CMTM3-213ENST00000566756 ZMYM3Q14202 1370 aa22.32■■□□□ 1.16
CMTM3-213ENST00000566756 RCAN3Q9UKA8 241 aa22.3■■□□□ 1.16
CMTM3-213ENST00000566756 MYO3AQ8NEV4 1616 aa22.3■■□□□ 1.16
CMTM3-213ENST00000566756 SLC24A1O60721 1099 aa22.29■■□□□ 1.16
CMTM3-213ENST00000566756 PANK3Q9H999 370 aa22.29■■□□□ 1.16
CMTM3-213ENST00000566756 ADGRB1O14514 1584 aa22.28■■□□□ 1.16
CMTM3-213ENST00000566756 CDCA8Q53HL2 280 aa22.27■■□□□ 1.15
CMTM3-213ENST00000566756 KDM5AP29375 1690 aaKnown RBP22.25■■□□□ 1.15
CMTM3-213ENST00000566756 SBNO2Q9Y2G9 1366 aa22.24■■□□□ 1.15
CMTM3-213ENST00000566756 A2ML1A8K2U0 1454 aa22.23■■□□□ 1.15
CMTM3-213ENST00000566756 NPC1L1Q9UHC9 1359 aa22.22■■□□□ 1.15
CMTM3-213ENST00000566756 CC2D1BQ5T0F9 858 aaKnown RBP22.21■■□□□ 1.15
CMTM3-213ENST00000566756 STAG3Q9UJ98 1225 aa22.19■■□□□ 1.14
CMTM3-213ENST00000566756 FER1L4A9Z1Z3 1794 aa22.18■■□□□ 1.14
CMTM3-213ENST00000566756 TNRQ92752 1358 aa22.17■■□□□ 1.14
CMTM3-213ENST00000566756 TCERG1O14776 1098 aaKnown RBP22.17■■□□□ 1.14
CMTM3-213ENST00000566756 NOP58Q9Y2X3 529 aaKnown RBP22.17■■□□□ 1.14
CMTM3-213ENST00000566756 ASXL1Q8IXJ9 1541 aa22.16■■□□□ 1.14
CMTM3-213ENST00000566756 NUTM2DQ5VT03 806 aaPredicted RBP22.16■■□□□ 1.14
CMTM3-213ENST00000566756 EXOC6Q8TAG9 804 aa22.16■■□□□ 1.14
CMTM3-213ENST00000566756 KNSTRNQ9Y448 316 aa22.16■■□□□ 1.14
CMTM3-213ENST00000566756 ARHGEF28Q8N1W1 1705 aaKnown RBP22.15■■□□□ 1.14
CMTM3-213ENST00000566756 C3P01024 1663 aa22.15■■□□□ 1.14
CMTM3-213ENST00000566756 MYOM1P52179 1685 aa22.15■■□□□ 1.14
CMTM3-213ENST00000566756 QRICH2Q9H0J4 1663 aa22.15■■□□□ 1.14
CMTM3-213ENST00000566756 ANP32AP39687 249 aaKnown RBP22.14■■□□□ 1.14
CMTM3-213ENST00000566756 RIMS2Q9UQ26 1411 aa22.14■■□□□ 1.13
CMTM3-213ENST00000566756 CENPJQ9HC77 1338 aaPredicted RBP22.14■■□□□ 1.13
CMTM3-213ENST00000566756 SENP3-EIF4A1A0A087X0R7 540 aa22.14■■□□□ 1.13
CMTM3-213ENST00000566756 AMER1Q5JTC6 1135 aaPredicted RBP22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms