RNA–Protein interactions for RNA: ENST00000566723.1

SMPD3-208, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-208ENST00000566723 RRBP1Q9P2E9 1410 aaKnown RBP23.23■■□□□ 1.31
SMPD3-208ENST00000566723 NUP155O75694 1391 aa23.22■■□□□ 1.31
SMPD3-208ENST00000566723 RIMS2Q9UQ26 1411 aa23.21■■□□□ 1.31
SMPD3-208ENST00000566723 SPHKAPQ2M3C7 1700 aa23.2■■□□□ 1.3
SMPD3-208ENST00000566723 MED1Q15648 1581 aaPredicted RBP23.2■■□□□ 1.3
SMPD3-208ENST00000566723 NKTRP30414 1462 aaKnown RBP23.2■■□□□ 1.3
SMPD3-208ENST00000566723 PLEKHG1Q9ULL1 1385 aa23.19■■□□□ 1.3
SMPD3-208ENST00000566723 SLC26A8Q96RN1 970 aa23.19■■□□□ 1.3
SMPD3-208ENST00000566723 CHD2O14647 1828 aaKnown RBP23.19■■□□□ 1.3
SMPD3-208ENST00000566723 KCNA6P17658 529 aa23.18■■□□□ 1.3
SMPD3-208ENST00000566723 TMEM94Q12767 1356 aa23.16■■□□□ 1.3
SMPD3-208ENST00000566723 PPP1R15AO75807 674 aaPredicted RBP23.15■■□□□ 1.3
SMPD3-208ENST00000566723 HDGFP51858 240 aaKnown RBP23.14■■□□□ 1.29
SMPD3-208ENST00000566723 BCANQ96GW7 911 aa23.14■■□□□ 1.29
SMPD3-208ENST00000566723 DIP2AQ14689 1571 aa23.14■■□□□ 1.29
SMPD3-208ENST00000566723 CHGAP10645 457 aaKnown RBP23.13■■□□□ 1.29
SMPD3-208ENST00000566723 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.11■■□□□ 1.29
SMPD3-208ENST00000566723 NAIPQ13075 1403 aa23.1■■□□□ 1.29
SMPD3-208ENST00000566723 PROSER2Q86WR7 435 aaPredicted RBP23.1■■□□□ 1.29
SMPD3-208ENST00000566723 SENP3Q9H4L4 574 aaPredicted RBP23.09■■□□□ 1.29
SMPD3-208ENST00000566723 SOCS7O14512 581 aa23.08■■□□□ 1.29
SMPD3-208ENST00000566723 ADAMTS13Q76LX8 1427 aa23.08■■□□□ 1.28
SMPD3-208ENST00000566723 ROBO1Q9Y6N7 1651 aa23.07■■□□□ 1.28
SMPD3-208ENST00000566723 FAM135BQ49AJ0 1406 aa23.07■■□□□ 1.28
SMPD3-208ENST00000566723 CLTCL1P53675 1640 aa23.05■■□□□ 1.28
SMPD3-208ENST00000566723 TRPM2O94759 1503 aa23.05■■□□□ 1.28
SMPD3-208ENST00000566723 TBX22Q9Y458 520 aa23.05■■□□□ 1.28
SMPD3-208ENST00000566723 MSH6P52701 1360 aa23.04■■□□□ 1.28
SMPD3-208ENST00000566723 NUTM2DQ5VT03 806 aaPredicted RBP23.04■■□□□ 1.28
SMPD3-208ENST00000566723 RBM33Q96EV2 1170 aaKnown RBP23.04■■□□□ 1.28
SMPD3-208ENST00000566723 KIF1BO60333 1816 aa23.03■■□□□ 1.28
SMPD3-208ENST00000566723 HFM1A2PYH4 1435 aa23.03■■□□□ 1.28
SMPD3-208ENST00000566723 NRXN3Q9Y4C0 1643 aa23.03■■□□□ 1.28
SMPD3-208ENST00000566723 PIK3R4Q99570 1358 aa23.02■■□□□ 1.28
SMPD3-208ENST00000566723 SETBP1Q9Y6X0 1596 aa23.01■■□□□ 1.27
SMPD3-208ENST00000566723 NCOA3Q9Y6Q9 1424 aa22.99■■□□□ 1.27
SMPD3-208ENST00000566723 XRN1Q8IZH2 1706 aaKnown RBP22.97■■□□□ 1.27
SMPD3-208ENST00000566723 NEXMIFQ5QGS0 1516 aa22.97■■□□□ 1.27
SMPD3-208ENST00000566723 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.96■■□□□ 1.27
SMPD3-208ENST00000566723 PHLPP1O60346 1717 aa22.95■■□□□ 1.26
SMPD3-208ENST00000566723 PHF23Q9BUL5 403 aaPredicted RBP22.95■■□□□ 1.26
SMPD3-208ENST00000566723 PTPRUQ92729 1446 aa22.93■■□□□ 1.26
SMPD3-208ENST00000566723 ZNF326Q5BKZ1 582 aaKnown RBP22.93■■□□□ 1.26
SMPD3-208ENST00000566723 SLAIN2Q9P270 581 aa22.91■■□□□ 1.26
SMPD3-208ENST00000566723 TRIM52Q96A61 297 aa22.9■■□□□ 1.26
SMPD3-208ENST00000566723 C14orf37Q86TY3 774 aa22.89■■□□□ 1.25
SMPD3-208ENST00000566723 AMOTL2Q9Y2J4 779 aa22.88■■□□□ 1.25
SMPD3-208ENST00000566723 COL16A1Q07092 1604 aaPredicted RBP22.87■■□□□ 1.25
SMPD3-208ENST00000566723 SETD1AO15047 1707 aaKnown RBP22.86■■□□□ 1.25
SMPD3-208ENST00000566723 SLC4A1APQ9BWU0 796 aaKnown RBP22.86■■□□□ 1.25
SMPD3-208ENST00000566723 C19orf44Q9H6X5 657 aa22.86■■□□□ 1.25
SMPD3-208ENST00000566723 PPLO60437 1756 aa22.86■■□□□ 1.25
SMPD3-208ENST00000566723 CADPS2Q86UW7 1296 aa22.85■■□□□ 1.25
SMPD3-208ENST00000566723 METP08581 1390 aa22.85■■□□□ 1.25
SMPD3-208ENST00000566723 DCCP43146 1447 aa22.84■■□□□ 1.25
SMPD3-208ENST00000566723 AHDC1Q5TGY3 1603 aaPredicted RBP22.83■■□□□ 1.25
SMPD3-208ENST00000566723 ATF3P18847 181 aa22.82■■□□□ 1.24
SMPD3-208ENST00000566723 NALCNQ8IZF0 1738 aa22.81■■□□□ 1.24
SMPD3-208ENST00000566723 JCADQ9P266 1359 aa22.79■■□□□ 1.24
SMPD3-208ENST00000566723 SHPRHQ149N8 1683 aa22.77■■□□□ 1.24
SMPD3-208ENST00000566723 ADGRL3Q9HAR2 1447 aa22.77■■□□□ 1.24
SMPD3-208ENST00000566723 RGS17Q9UGC6 210 aaPredicted RBP22.77■■□□□ 1.24
SMPD3-208ENST00000566723 VGFO15240 615 aaPredicted RBP22.76■■□□□ 1.23
SMPD3-208ENST00000566723 RPGRIP1LQ68CZ1 1315 aa22.76■■□□□ 1.23
SMPD3-208ENST00000566723 PTCH1Q13635 1447 aa22.75■■□□□ 1.23
SMPD3-208ENST00000566723 IFT172Q9UG01 1749 aa22.75■■□□□ 1.23
SMPD3-208ENST00000566723 ASXL1Q8IXJ9 1541 aa22.75■■□□□ 1.23
SMPD3-208ENST00000566723 NHSL1Q5SYE7 1610 aa22.75■■□□□ 1.23
SMPD3-208ENST00000566723 MST1RQ04912 1400 aa22.74■■□□□ 1.23
SMPD3-208ENST00000566723 CCDC144AA2RUR9 1427 aa22.74■■□□□ 1.23
SMPD3-208ENST00000566723 PRAG1Q86YV5 1406 aa22.74■■□□□ 1.23
SMPD3-208ENST00000566723 FOXD1Q16676 465 aa22.73■■□□□ 1.23
SMPD3-208ENST00000566723 BRINP3Q76B58 766 aa22.72■■□□□ 1.23
SMPD3-208ENST00000566723 SPATA31E1Q6ZUB1 1445 aa22.69■■□□□ 1.22
SMPD3-208ENST00000566723 LRP6O75581 1613 aa22.68■■□□□ 1.22
SMPD3-208ENST00000566723 MPHOSPH9Q99550 1183 aa22.68■■□□□ 1.22
SMPD3-208ENST00000566723 ROBO2Q9HCK4 1378 aa22.67■■□□□ 1.22
SMPD3-208ENST00000566723 SPATA31A6Q5VVP1 1343 aa22.67■■□□□ 1.22
SMPD3-208ENST00000566723 SETD5Q9C0A6 1442 aa22.65■■□□□ 1.22
SMPD3-208ENST00000566723 ACIN1Q9UKV3 1341 aaKnown RBP22.65■■□□□ 1.22
SMPD3-208ENST00000566723 POTEAQ6S8J7 498 aa22.64■■□□□ 1.21
SMPD3-208ENST00000566723 LAMC1P11047 1609 aa22.63■■□□□ 1.21
SMPD3-208ENST00000566723 ANKRD30BQ9BXX2 1392 aa22.63■■□□□ 1.21
SMPD3-208ENST00000566723 C1orf167Q5SNV9 1468 aa22.62■■□□□ 1.21
SMPD3-208ENST00000566723 KNDC1Q76NI1 1749 aa22.62■■□□□ 1.21
SMPD3-208ENST00000566723 ADGRF5Q8IZF2 1346 aa22.61■■□□□ 1.21
SMPD3-208ENST00000566723 CDC42BPGQ6DT37 1551 aa22.59■■□□□ 1.21
SMPD3-208ENST00000566723 RGL3Q3MIN7 710 aa22.59■■□□□ 1.21
SMPD3-208ENST00000566723 PIK3C2GO75747 1445 aa22.58■■□□□ 1.21
SMPD3-208ENST00000566723 MEX3CQ5U5Q3 659 aaKnown RBP22.58■■□□□ 1.21
SMPD3-208ENST00000566723 TECPR2O15040 1411 aa22.57■■□□□ 1.2
SMPD3-208ENST00000566723 RAB3GAP2Q9H2M9 1393 aa22.57■■□□□ 1.2
SMPD3-208ENST00000566723 LRPPRCP42704 1394 aaKnown RBP22.53■■□□□ 1.2
SMPD3-208ENST00000566723 DDX17Q92841 729 aaKnown RBP22.53■■□□□ 1.2
SMPD3-208ENST00000566723 LRRC59Q96AG4 307 aaKnown RBP22.53■■□□□ 1.2
SMPD3-208ENST00000566723 MYOM2P54296 1465 aa22.53■■□□□ 1.2
SMPD3-208ENST00000566723 PNPLA6Q8IY17 1366 aa22.52■■□□□ 1.2
SMPD3-208ENST00000566723 NRXN1Q9ULB1 1477 aa22.51■■□□□ 1.19
SMPD3-208ENST00000566723 NUTM2BA6NNL0 878 aaPredicted RBP22.5■■□□□ 1.19
SMPD3-208ENST00000566723 NUTM2EB1AL46 878 aaPredicted RBP22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms