RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.23■■■□□ 2.59
CLN3-219ENST00000565778 RIMS2Q9UQ26 1411 aa31.23■■■□□ 2.59
CLN3-219ENST00000565778 STRCP1A6NGW2 1772 aa31.22■■■□□ 2.59
CLN3-219ENST00000565778 KCNA6P17658 529 aa31.21■■■□□ 2.59
CLN3-219ENST00000565778 NUTM2DQ5VT03 806 aaPredicted RBP31.2■■■□□ 2.59
CLN3-219ENST00000565778 TMEM131LA2VDJ0 1609 aa31.19■■■□□ 2.58
CLN3-219ENST00000565778 ZFYVE9O95405 1425 aa31.18■■■□□ 2.58
CLN3-219ENST00000565778 PLEKHG1Q9ULL1 1385 aa31.16■■■□□ 2.58
CLN3-219ENST00000565778 HFM1A2PYH4 1435 aa31.15■■■□□ 2.58
CLN3-219ENST00000565778 PROSER2Q86WR7 435 aaPredicted RBP31.15■■■□□ 2.58
CLN3-219ENST00000565778 MYO5BQ9ULV0 1848 aa31.14■■■□□ 2.58
CLN3-219ENST00000565778 HSPA1LP34931 641 aa31.13■■■□□ 2.57
CLN3-219ENST00000565778 ZNF326Q5BKZ1 582 aaKnown RBP31.11■■■□□ 2.57
CLN3-219ENST00000565778 DISP3Q9P2K9 1392 aa31.11■■■□□ 2.57
CLN3-219ENST00000565778 TBX22Q9Y458 520 aa31.11■■■□□ 2.57
CLN3-219ENST00000565778 SLC4A1APQ9BWU0 796 aaKnown RBP31.1■■■□□ 2.57
CLN3-219ENST00000565778 RBM33Q96EV2 1170 aaKnown RBP31.09■■■□□ 2.57
CLN3-219ENST00000565778 TMEM94Q12767 1356 aa31.07■■■□□ 2.56
CLN3-219ENST00000565778 SPHKAPQ2M3C7 1700 aa31.03■■■□□ 2.56
CLN3-219ENST00000565778 ALKQ9UM73 1620 aa31.02■■■□□ 2.56
CLN3-219ENST00000565778 ADAMTS13Q76LX8 1427 aa30.97■■■□□ 2.55
CLN3-219ENST00000565778 XIRP1Q702N8 1843 aaKnown RBP30.96■■■□□ 2.55
CLN3-219ENST00000565778 NKTRP30414 1462 aaKnown RBP30.95■■■□□ 2.55
CLN3-219ENST00000565778 FOXD1Q16676 465 aa30.94■■■□□ 2.54
CLN3-219ENST00000565778 TRPM2O94759 1503 aa30.93■■■□□ 2.54
CLN3-219ENST00000565778 NWD1Q149M9 1564 aa30.92■■■□□ 2.54
CLN3-219ENST00000565778 MSH6P52701 1360 aa30.92■■■□□ 2.54
CLN3-219ENST00000565778 PIK3R4Q99570 1358 aa30.92■■■□□ 2.54
CLN3-219ENST00000565778 CLTCL1P53675 1640 aa30.91■■■□□ 2.54
CLN3-219ENST00000565778 C14orf37Q86TY3 774 aa30.91■■■□□ 2.54
CLN3-219ENST00000565778 AMOTL2Q9Y2J4 779 aa30.91■■■□□ 2.54
CLN3-219ENST00000565778 CHD2O14647 1828 aaKnown RBP30.9■■■□□ 2.54
CLN3-219ENST00000565778 MPHOSPH9Q99550 1183 aa30.9■■■□□ 2.54
CLN3-219ENST00000565778 DIP2AQ14689 1571 aa30.88■■■□□ 2.53
CLN3-219ENST00000565778 ILDR2Q71H61 639 aa30.86■■■□□ 2.53
CLN3-219ENST00000565778 FAM135BQ49AJ0 1406 aa30.85■■■□□ 2.53
CLN3-219ENST00000565778 VGFO15240 615 aaPredicted RBP30.85■■■□□ 2.53
CLN3-219ENST00000565778 SLAIN2Q9P270 581 aa30.85■■■□□ 2.53
CLN3-219ENST00000565778 ACIN1Q9UKV3 1341 aaKnown RBP30.84■■■□□ 2.53
CLN3-219ENST00000565778 SETD5Q9C0A6 1442 aa30.82■■■□□ 2.52
CLN3-219ENST00000565778 KIF1BO60333 1816 aa30.82■■■□□ 2.52
CLN3-219ENST00000565778 NCOA3Q9Y6Q9 1424 aa30.81■■■□□ 2.52
CLN3-219ENST00000565778 RPGRIP1LQ68CZ1 1315 aa30.81■■■□□ 2.52
CLN3-219ENST00000565778 PTPRUQ92729 1446 aa30.81■■■□□ 2.52
CLN3-219ENST00000565778 C19orf44Q9H6X5 657 aa30.8■■■□□ 2.52
CLN3-219ENST00000565778 NEXMIFQ5QGS0 1516 aa30.79■■■□□ 2.52
CLN3-219ENST00000565778 SETBP1Q9Y6X0 1596 aa30.78■■■□□ 2.52
CLN3-219ENST00000565778 METP08581 1390 aa30.78■■■□□ 2.52
CLN3-219ENST00000565778 ATF3P18847 181 aa30.77■■■□□ 2.52
CLN3-219ENST00000565778 RGL3Q3MIN7 710 aa30.75■■■□□ 2.51
CLN3-219ENST00000565778 CADPS2Q86UW7 1296 aa30.75■■■□□ 2.51
CLN3-219ENST00000565778 CCDC144AA2RUR9 1427 aa30.74■■■□□ 2.51
CLN3-219ENST00000565778 NRXN3Q9Y4C0 1643 aa30.74■■■□□ 2.51
CLN3-219ENST00000565778 RAB3GAP2Q9H2M9 1393 aa30.69■■■□□ 2.5
CLN3-219ENST00000565778 PHF23Q9BUL5 403 aaPredicted RBP30.69■■■□□ 2.5
CLN3-219ENST00000565778 MED1Q15648 1581 aaPredicted RBP30.69■■■□□ 2.5
CLN3-219ENST00000565778 ROBO1Q9Y6N7 1651 aa30.68■■■□□ 2.5
CLN3-219ENST00000565778 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.63■■■□□ 2.49
CLN3-219ENST00000565778 ADGRF5Q8IZF2 1346 aa30.61■■■□□ 2.49
CLN3-219ENST00000565778 XRN1Q8IZH2 1706 aaKnown RBP30.61■■■□□ 2.49
CLN3-219ENST00000565778 SPATA31E1Q6ZUB1 1445 aa30.59■■■□□ 2.49
CLN3-219ENST00000565778 SOCS7O14512 581 aa30.59■■■□□ 2.49
CLN3-219ENST00000565778 ANKRD30BQ9BXX2 1392 aa30.57■■■□□ 2.48
CLN3-219ENST00000565778 PPLO60437 1756 aa30.56■■■□□ 2.48
CLN3-219ENST00000565778 DCCP43146 1447 aa30.55■■■□□ 2.48
CLN3-219ENST00000565778 HRCP23327 699 aa30.54■■■□□ 2.48
CLN3-219ENST00000565778 BRINP3Q76B58 766 aa30.54■■■□□ 2.48
CLN3-219ENST00000565778 ROBO2Q9HCK4 1378 aa30.52■■■□□ 2.48
CLN3-219ENST00000565778 PHLPP1O60346 1717 aa30.51■■■□□ 2.47
CLN3-219ENST00000565778 ADGRL3Q9HAR2 1447 aa30.5■■■□□ 2.47
CLN3-219ENST00000565778 STK26Q9P289 416 aa30.5■■■□□ 2.47
CLN3-219ENST00000565778 JCADQ9P266 1359 aa30.5■■■□□ 2.47
CLN3-219ENST00000565778 TMEM132EQ6IEE7 984 aa30.47■■■□□ 2.47
CLN3-219ENST00000565778 MST1RQ04912 1400 aa30.47■■■□□ 2.47
CLN3-219ENST00000565778 PTCH1Q13635 1447 aa30.47■■■□□ 2.47
CLN3-219ENST00000565778 SETD1AO15047 1707 aaKnown RBP30.46■■■□□ 2.47
CLN3-219ENST00000565778 RGS17Q9UGC6 210 aaPredicted RBP30.43■■■□□ 2.46
CLN3-219ENST00000565778 WAPLQ7Z5K2 1190 aa30.4■■■□□ 2.46
CLN3-219ENST00000565778 C14orf93Q9H972 538 aaKnown RBP30.4■■■□□ 2.46
CLN3-219ENST00000565778 COL16A1Q07092 1604 aaPredicted RBP30.4■■■□□ 2.46
CLN3-219ENST00000565778 AHDC1Q5TGY3 1603 aaPredicted RBP30.39■■■□□ 2.46
CLN3-219ENST00000565778 NALCNQ8IZF0 1738 aa30.39■■■□□ 2.45
CLN3-219ENST00000565778 PIK3C2GO75747 1445 aa30.39■■■□□ 2.45
CLN3-219ENST00000565778 PRAG1Q86YV5 1406 aa30.39■■■□□ 2.45
CLN3-219ENST00000565778 CFAP70Q5T0N1 1121 aa30.38■■■□□ 2.45
CLN3-219ENST00000565778 DDX17Q92841 729 aaKnown RBP30.38■■■□□ 2.45
CLN3-219ENST00000565778 IFT172Q9UG01 1749 aa30.38■■■□□ 2.45
CLN3-219ENST00000565778 LRPPRCP42704 1394 aaKnown RBP30.38■■■□□ 2.45
CLN3-219ENST00000565778 ASXL1Q8IXJ9 1541 aa30.37■■■□□ 2.45
CLN3-219ENST00000565778 SPATA31A6Q5VVP1 1343 aa30.37■■■□□ 2.45
CLN3-219ENST00000565778 ORAI2Q96SN7 254 aa30.36■■■□□ 2.45
CLN3-219ENST00000565778 KDM2AQ9Y2K7 1162 aa30.36■■■□□ 2.45
CLN3-219ENST00000565778 ABCC11Q96J66 1382 aa30.36■■■□□ 2.45
CLN3-219ENST00000565778 C1orf167Q5SNV9 1468 aa30.36■■■□□ 2.45
CLN3-219ENST00000565778 LRRC59Q96AG4 307 aaKnown RBP30.35■■■□□ 2.45
CLN3-219ENST00000565778 MEX3CQ5U5Q3 659 aaKnown RBP30.33■■■□□ 2.45
CLN3-219ENST00000565778 DCAF11Q8TEB1 546 aa30.33■■■□□ 2.45
CLN3-219ENST00000565778 DHX57Q6P158 1386 aaKnown RBP30.31■■■□□ 2.44
CLN3-219ENST00000565778 NUTM2BA6NNL0 878 aaPredicted RBP30.31■■■□□ 2.44
CLN3-219ENST00000565778 NUTM2EB1AL46 878 aaPredicted RBP30.31■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 165 ms